Wall clock time and date at job start Wed Apr 1 2020 05:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35502 * 116.99686 * 2 1 4 4 C 1.39209 * 120.90362 * 359.97438 * 3 2 1 5 5 C 1.37907 * 119.38941 * 180.02562 * 4 3 2 6 6 N 1.32074 * 121.29070 * 359.74363 * 5 4 3 7 7 C 1.32184 * 121.97794 * 0.53379 * 6 5 4 8 8 O 1.35435 * 119.77827 * 179.75150 * 7 6 5 9 9 C 1.40293 * 120.44716 * 359.46866 * 7 6 5 10 10 C 1.47226 * 120.65605 * 180.28386 * 9 7 6 11 11 O 1.21620 * 120.00838 * 89.99415 * 10 9 7 12 12 N 1.34784 * 119.99815 * 270.00261 * 10 9 7 13 13 C 1.46596 * 119.75171 * 359.97438 * 12 10 9 14 14 C 1.53891 * 110.70479 * 132.25686 * 13 12 10 15 15 C 1.51971 * 107.29199 * 51.81646 * 14 13 12 16 16 H 1.09000 * 111.01620 * 56.51828 * 15 14 13 17 17 C 1.53697 * 115.00962 * 184.55492 * 15 14 13 18 18 C 1.55299 * 101.81709 * 153.46533 * 17 15 14 19 19 N 1.48155 * 107.04160 * 337.55546 * 18 17 15 20 20 C 1.36936 * 126.39510 * 174.97282 * 19 18 17 21 21 H 1.07999 * 119.99748 * 180.02562 * 20 19 18 22 22 C 1.38817 * 120.00077 * 0.02562 * 20 19 18 23 23 N 1.31617 * 119.99831 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99794 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47213 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47169 * 120.00242 * 24 22 20 27 27 H 1.48502 * 109.46948 * 240.00299 * 24 22 20 28 28 C 1.45504 * 107.20722 * 354.99844 * 19 18 17 29 29 H 1.09002 * 109.56440 * 273.37516 * 28 19 18 30 30 C 1.47796 * 119.75222 * 179.72989 * 12 10 9 31 31 H 1.08999 * 109.47190 * 59.99451 * 1 2 3 32 32 H 1.09004 * 109.47228 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47071 * 299.99878 * 1 2 3 34 34 H 1.08001 * 120.30651 * 0.02562 * 4 3 2 35 35 H 1.08000 * 119.35044 * 179.97438 * 5 4 3 36 36 H 0.96701 * 113.99648 * 269.72516 * 8 7 6 37 37 H 1.08988 * 109.23239 * 252.57586 * 13 12 10 38 38 H 1.09001 * 109.23051 * 11.98537 * 13 12 10 39 39 H 1.08997 * 109.89191 * 171.26249 * 14 13 12 40 40 H 1.09001 * 109.89297 * 292.36907 * 14 13 12 41 41 H 1.09003 * 110.96021 * 271.60036 * 17 15 14 42 42 H 1.09000 * 110.95706 * 35.33195 * 17 15 14 43 43 H 1.08997 * 109.91795 * 218.20579 * 18 17 15 44 44 H 1.09001 * 110.08557 * 96.99772 * 18 17 15 45 45 H 0.96997 * 119.99633 * 180.02562 * 23 22 20 46 46 H 1.08996 * 110.06377 * 350.46917 * 30 12 10 47 47 H 1.08995 * 110.06511 * 112.03893 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3044 2.3866 -0.0005 5 6 1.9627 3.5985 -0.0011 6 7 3.2818 3.6625 0.0040 7 6 4.0355 2.5766 -0.0007 8 8 5.3847 2.6941 -0.0003 9 6 3.4472 1.3029 -0.0001 10 6 4.2821 0.0904 0.0010 11 8 4.6268 -0.4099 1.0546 12 7 4.6648 -0.4654 -1.1658 13 6 4.2460 0.1418 -2.4327 14 6 5.4425 0.2828 -3.3902 15 6 6.1136 -1.0778 -3.4780 16 1 5.4065 -1.8424 -3.7996 17 6 7.4054 -1.1127 -4.3100 18 6 8.1644 -2.3064 -3.6691 19 7 7.6213 -2.4825 -2.3020 20 6 7.9414 -3.4827 -1.4231 21 1 7.4802 -3.5119 -0.4470 22 6 8.8587 -4.4591 -1.7869 23 7 9.4211 -4.4232 -2.9763 24 14 9.2958 -5.8230 -0.5877 25 1 8.5321 -5.6379 0.6724 26 1 8.9512 -7.1377 -1.1862 27 1 10.7512 -5.7781 -0.2961 28 6 6.6839 -1.3946 -2.0677 29 1 7.2209 -0.5254 -1.6880 30 6 5.5080 -1.6792 -1.1584 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.2249 2.3528 -0.0005 35 1 1.3881 4.5130 -0.0019 36 1 5.7768 2.7278 -0.8836 37 1 3.4861 -0.4860 -2.8978 38 1 3.8258 1.1282 -2.2365 39 1 5.0940 0.5888 -4.3766 40 1 6.1455 1.0186 -2.9995 41 1 7.1877 -1.3076 -5.3602 42 1 7.9680 -0.1862 -4.1955 43 1 9.2305 -2.0851 -3.6196 44 1 8.0000 -3.2117 -4.2535 45 1 10.0617 -5.1057 -3.2306 46 1 5.8596 -1.8841 -0.1472 47 1 4.9423 -2.5298 -1.5384 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042312255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:22 Heat of formation + Delta-G solvation = -29.059630 kcal Electronic energy + Delta-G solvation = -32098.256071 eV Core-core repulsion = 27862.316076 eV Total energy + Delta-G solvation = -4235.939995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.42612 -39.82531 -39.09221 -38.06685 -37.01212 -35.35654 -32.91630 -32.25575 -31.26749 -30.89228 -29.29233 -28.48913 -27.89931 -25.21434 -24.60703 -23.30765 -23.11609 -22.26746 -20.34195 -19.97399 -19.58256 -19.10458 -17.87875 -17.55828 -17.34916 -16.53803 -16.29472 -15.88764 -15.52713 -15.11549 -14.86583 -14.79583 -14.64774 -14.33227 -13.95185 -13.73095 -13.54046 -13.26476 -13.07280 -12.90553 -12.56321 -12.26750 -12.07872 -12.00353 -11.91440 -11.85207 -11.51760 -11.32929 -10.95922 -10.81123 -10.75746 -10.27397 -10.11886 -9.96009 -9.90048 -9.69473 -9.58040 -9.51286 -9.36578 -9.14392 -8.61649 -8.42714 -6.84277 -5.70450 -3.04047 0.46971 0.83984 2.54288 2.65827 3.00029 3.20852 3.43063 3.44180 3.49860 3.52526 4.13752 4.40018 4.51267 4.52698 4.58392 4.69583 4.70967 4.82560 4.92644 5.00512 5.05515 5.15193 5.25198 5.37305 5.46409 5.50072 5.61931 5.66076 5.74883 5.85686 5.91955 6.00361 6.04047 6.09641 6.15782 6.39115 6.47864 6.54667 6.67736 6.72824 6.74420 7.05001 7.18186 7.51591 7.55819 7.57202 7.62192 7.83226 8.24042 8.29820 9.20863 9.83630 10.49740 11.41935 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015439 B = 0.003232 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.128815 B = 8660.060344 C = 9214.003972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.297 6.297 3 C 0.213 3.787 4 C -0.275 4.275 5 C 0.170 3.830 6 N -0.522 5.522 7 C 0.381 3.619 8 O -0.466 6.466 9 C -0.219 4.219 10 C 0.578 3.422 11 O -0.523 6.523 12 N -0.596 5.596 13 C 0.112 3.888 14 C -0.119 4.119 15 C -0.112 4.112 16 H 0.077 0.923 17 C -0.137 4.137 18 C 0.177 3.823 19 N -0.592 5.592 20 C -0.227 4.227 21 H 0.080 0.920 22 C -0.006 4.006 23 N -0.922 5.922 24 Si 0.909 3.091 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.157 3.843 29 H 0.024 0.976 30 C 0.117 3.883 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.062 0.938 34 H 0.149 0.851 35 H 0.168 0.832 36 H 0.407 0.593 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.038 0.962 44 H 0.056 0.944 45 H 0.251 0.749 46 H 0.093 0.907 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.118 15.743 -1.770 25.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.207 6.207 3 C 0.158 3.842 4 C -0.296 4.296 5 C 0.014 3.986 6 N -0.245 5.245 7 C 0.202 3.798 8 O -0.274 6.274 9 C -0.227 4.227 10 C 0.363 3.637 11 O -0.398 6.398 12 N -0.329 5.329 13 C -0.011 4.011 14 C -0.158 4.158 15 C -0.132 4.132 16 H 0.096 0.904 17 C -0.175 4.175 18 C 0.053 3.947 19 N -0.317 5.317 20 C -0.355 4.355 21 H 0.098 0.902 22 C -0.202 4.202 23 N -0.569 5.569 24 Si 0.740 3.260 25 H -0.203 1.203 26 H -0.218 1.218 27 H -0.217 1.217 28 C 0.048 3.952 29 H 0.042 0.958 30 C -0.004 4.004 31 H 0.081 0.919 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.166 0.834 35 H 0.185 0.815 36 H 0.266 0.734 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.111 0.889 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.288 15.763 -0.586 24.917 hybrid contribution -0.321 -1.375 0.065 1.414 sum -19.609 14.388 -0.521 24.327 Atomic orbital electron populations 1.23245 0.77023 1.04974 1.01805 1.86136 1.22399 1.25614 1.86567 1.19081 0.90235 0.85291 0.89596 1.22157 1.01900 0.92574 1.13013 1.22404 0.88657 0.97273 0.90294 1.67311 1.07247 1.32073 1.17833 1.18796 0.84861 0.85399 0.90761 1.84766 1.13557 1.95040 1.34045 1.20329 0.91836 0.95888 1.14642 1.17531 0.79453 0.82576 0.84107 1.90819 1.55458 1.62633 1.30938 1.48189 1.51223 1.28542 1.04953 1.21649 0.97121 0.97636 0.84686 1.21826 0.96851 0.98509 0.98605 1.22259 0.96906 0.95655 0.98383 0.90414 1.22712 0.96066 1.00371 0.98352 1.21548 0.95139 0.93549 0.84484 1.44174 1.46147 1.27480 1.13857 1.19108 1.20064 1.01256 0.95104 0.90177 1.24777 0.99282 0.99129 0.97059 1.69950 1.32174 1.35701 1.19088 0.86075 0.77979 0.81803 0.80176 1.20336 1.21794 1.21742 1.20897 0.89687 0.92297 0.92333 0.95824 1.21681 0.91371 0.84519 1.02878 0.91934 0.87429 0.91981 0.83384 0.81505 0.73361 0.91556 0.91420 0.90768 0.91473 0.92236 0.92497 0.94424 0.92580 0.93836 0.88866 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.84 101.05 0.99 1.14 16 2 O -0.30 -3.40 10.03 -18.20 -0.18 -3.58 16 3 C 0.21 2.45 6.74 -38.32 -0.26 2.20 16 4 C -0.28 -2.19 9.09 -39.34 -0.36 -2.55 16 5 C 0.17 1.41 11.15 -17.57 -0.20 1.21 16 6 N -0.52 -6.12 10.37 -13.06 -0.14 -6.26 16 7 C 0.38 5.06 7.49 -16.63 -0.12 4.93 16 8 O -0.47 -6.22 13.02 -18.00 -0.23 -6.45 16 9 C -0.22 -3.10 3.66 -104.57 -0.38 -3.48 16 10 C 0.58 10.16 6.28 -12.61 -0.08 10.08 16 11 O -0.52 -11.54 16.48 5.26 0.09 -11.45 16 12 N -0.60 -9.60 3.02 -174.34 -0.53 -10.13 16 13 C 0.11 1.37 6.23 -3.53 -0.02 1.35 16 14 C -0.12 -1.45 5.72 -26.79 -0.15 -1.60 16 15 C -0.11 -1.84 2.62 -89.51 -0.23 -2.08 16 16 H 0.08 1.33 8.13 -51.93 -0.42 0.90 16 17 C -0.14 -2.41 6.54 -25.15 -0.16 -2.58 16 18 C 0.18 4.19 5.46 -1.91 -0.01 4.18 16 19 N -0.59 -14.86 3.35 -163.15 -0.55 -15.40 16 20 C -0.23 -6.33 9.88 -15.06 -0.15 -6.48 16 21 H 0.08 2.21 7.41 -52.49 -0.39 1.82 16 22 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 23 N -0.92 -26.98 10.43 55.49 0.58 -26.40 16 24 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 C 0.16 3.20 2.74 -68.03 -0.19 3.01 16 29 H 0.02 0.52 7.93 -51.93 -0.41 0.11 16 30 C 0.12 2.28 5.66 -4.16 -0.02 2.26 16 31 H 0.06 0.25 7.71 -51.93 -0.40 -0.15 16 32 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.29 7.71 -51.93 -0.40 -0.11 16 34 H 0.15 0.66 6.45 -52.49 -0.34 0.32 16 35 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.41 3.56 9.06 45.56 0.41 3.97 16 37 H 0.07 0.76 8.14 -51.94 -0.42 0.34 16 38 H 0.07 0.71 6.07 -51.93 -0.32 0.39 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.79 7.98 -51.93 -0.41 0.38 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 43 H 0.04 0.99 7.77 -51.93 -0.40 0.58 16 44 H 0.06 1.47 7.19 -51.93 -0.37 1.10 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.09 2.07 6.75 -51.93 -0.35 1.72 16 47 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -36.65 377.50 -7.64 -44.28 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.90 Total: 0.90 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: -1.44 Total: 11.32 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.63 Total: -58.19 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.33 Total: -21.49 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.65 -7.64 -44.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042312255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.222 kcal (2) G-P(sol) polarization free energy of solvation -36.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds