Wall clock time and date at job start Wed Apr 1 2020 05:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35502 * 116.99686 * 2 1 4 4 C 1.39209 * 120.90362 * 359.97438 * 3 2 1 5 5 C 1.37907 * 119.38941 * 180.02562 * 4 3 2 6 6 N 1.32074 * 121.29070 * 359.74363 * 5 4 3 7 7 C 1.32184 * 121.97794 * 0.53379 * 6 5 4 8 8 O 1.35435 * 119.77827 * 179.75150 * 7 6 5 9 9 C 1.40293 * 120.44716 * 359.46866 * 7 6 5 10 10 C 1.47226 * 120.65605 * 180.28386 * 9 7 6 11 11 O 1.21620 * 120.00838 * 89.99415 * 10 9 7 12 12 N 1.34784 * 119.99815 * 270.00261 * 10 9 7 13 13 C 1.46596 * 119.75171 * 359.97438 * 12 10 9 14 14 C 1.53891 * 110.70479 * 132.25686 * 13 12 10 15 15 C 1.51971 * 107.29199 * 51.81646 * 14 13 12 16 16 H 1.09000 * 111.01620 * 56.51828 * 15 14 13 17 17 C 1.53697 * 115.00962 * 184.55492 * 15 14 13 18 18 C 1.55299 * 101.81709 * 153.46533 * 17 15 14 19 19 N 1.48155 * 107.04160 * 337.55546 * 18 17 15 20 20 C 1.36936 * 126.39510 * 174.97282 * 19 18 17 21 21 H 1.07999 * 119.99748 * 180.02562 * 20 19 18 22 22 C 1.38817 * 120.00077 * 0.02562 * 20 19 18 23 23 N 1.31617 * 119.99831 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99794 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47213 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47169 * 120.00242 * 24 22 20 27 27 H 1.48502 * 109.46948 * 240.00299 * 24 22 20 28 28 C 1.45504 * 107.20722 * 354.99844 * 19 18 17 29 29 H 1.09002 * 109.56440 * 273.37516 * 28 19 18 30 30 C 1.47796 * 119.75222 * 179.72989 * 12 10 9 31 31 H 1.08999 * 109.47190 * 59.99451 * 1 2 3 32 32 H 1.09004 * 109.47228 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47071 * 299.99878 * 1 2 3 34 34 H 1.08001 * 120.30651 * 0.02562 * 4 3 2 35 35 H 1.08000 * 119.35044 * 179.97438 * 5 4 3 36 36 H 0.96701 * 113.99648 * 269.72516 * 8 7 6 37 37 H 1.08988 * 109.23239 * 252.57586 * 13 12 10 38 38 H 1.09001 * 109.23051 * 11.98537 * 13 12 10 39 39 H 1.08997 * 109.89191 * 171.26249 * 14 13 12 40 40 H 1.09001 * 109.89297 * 292.36907 * 14 13 12 41 41 H 1.09003 * 110.96021 * 271.60036 * 17 15 14 42 42 H 1.09000 * 110.95706 * 35.33195 * 17 15 14 43 43 H 1.08997 * 109.91795 * 218.20579 * 18 17 15 44 44 H 1.09001 * 110.08557 * 96.99772 * 18 17 15 45 45 H 0.96997 * 119.99633 * 180.02562 * 23 22 20 46 46 H 1.08996 * 110.06377 * 350.46917 * 30 12 10 47 47 H 1.08995 * 110.06511 * 112.03893 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3044 2.3866 -0.0005 5 6 1.9627 3.5985 -0.0011 6 7 3.2818 3.6625 0.0040 7 6 4.0355 2.5766 -0.0007 8 8 5.3847 2.6941 -0.0003 9 6 3.4472 1.3029 -0.0001 10 6 4.2821 0.0904 0.0010 11 8 4.6268 -0.4099 1.0546 12 7 4.6648 -0.4654 -1.1658 13 6 4.2460 0.1418 -2.4327 14 6 5.4425 0.2828 -3.3902 15 6 6.1136 -1.0778 -3.4780 16 1 5.4065 -1.8424 -3.7996 17 6 7.4054 -1.1127 -4.3100 18 6 8.1644 -2.3064 -3.6691 19 7 7.6213 -2.4825 -2.3020 20 6 7.9414 -3.4827 -1.4231 21 1 7.4802 -3.5119 -0.4470 22 6 8.8587 -4.4591 -1.7869 23 7 9.4211 -4.4232 -2.9763 24 14 9.2958 -5.8230 -0.5877 25 1 8.5321 -5.6379 0.6724 26 1 8.9512 -7.1377 -1.1862 27 1 10.7512 -5.7781 -0.2961 28 6 6.6839 -1.3946 -2.0677 29 1 7.2209 -0.5254 -1.6880 30 6 5.5080 -1.6792 -1.1584 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.2249 2.3528 -0.0005 35 1 1.3881 4.5130 -0.0019 36 1 5.7768 2.7278 -0.8836 37 1 3.4861 -0.4860 -2.8978 38 1 3.8258 1.1282 -2.2365 39 1 5.0940 0.5888 -4.3766 40 1 6.1455 1.0186 -2.9995 41 1 7.1877 -1.3076 -5.3602 42 1 7.9680 -0.1862 -4.1955 43 1 9.2305 -2.0851 -3.6196 44 1 8.0000 -3.2117 -4.2535 45 1 10.0617 -5.1057 -3.2306 46 1 5.8596 -1.8841 -0.1472 47 1 4.9423 -2.5298 -1.5384 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042312255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:21 Heat of formation + Delta-G solvation = -59.568586 kcal Electronic energy + Delta-G solvation = -32099.579038 eV Core-core repulsion = 27862.316076 eV Total energy + Delta-G solvation = -4237.262962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.35264 -41.08768 -39.90621 -39.53309 -37.86502 -36.90344 -34.70091 -33.24331 -32.86851 -31.72920 -30.72479 -30.16165 -28.44214 -26.59272 -26.26888 -24.55450 -23.90475 -23.59641 -21.82446 -21.57749 -20.71590 -20.14623 -18.83948 -18.66417 -18.34339 -18.24894 -17.34056 -16.95335 -16.74170 -16.37106 -16.16768 -15.81156 -15.72062 -15.66037 -15.50554 -15.06434 -14.82907 -14.47899 -14.15577 -14.01604 -13.85129 -13.65998 -13.52402 -13.15966 -13.09146 -12.94313 -12.79090 -12.56749 -12.53718 -12.47353 -12.15102 -12.00307 -11.80009 -11.55722 -11.44301 -11.35281 -11.05989 -10.74915 -10.61210 -10.10006 -10.03249 -9.79649 -8.92077 -7.88457 -5.22993 -0.31631 0.06795 1.36742 1.41635 1.42548 1.53177 1.78708 1.88469 2.42143 2.47390 2.66187 3.26365 3.29653 3.47749 3.67561 3.75162 3.76728 3.89867 3.92736 3.94832 4.22211 4.23944 4.26369 4.30028 4.35160 4.37816 4.47262 4.50506 4.59884 4.66754 4.73755 4.79065 4.84742 4.87107 4.89251 5.07617 5.14018 5.21289 5.25885 5.34210 5.46838 5.57228 5.66740 5.78206 6.06071 6.17944 6.25292 6.42936 6.79822 6.97822 7.07097 7.74895 8.41184 9.22410 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015439 B = 0.003232 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.128815 B = 8660.060344 C = 9214.003972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.330 6.330 3 C 0.208 3.792 4 C -0.255 4.255 5 C 0.178 3.822 6 N -0.538 5.538 7 C 0.374 3.626 8 O -0.489 6.489 9 C -0.248 4.248 10 C 0.577 3.423 11 O -0.586 6.586 12 N -0.590 5.590 13 C 0.109 3.891 14 C -0.109 4.109 15 C -0.095 4.095 16 H 0.075 0.925 17 C -0.119 4.119 18 C 0.180 3.820 19 N -0.613 5.613 20 C -0.238 4.238 21 H 0.072 0.928 22 C -0.060 4.060 23 N -0.946 5.946 24 Si 0.970 3.030 25 H -0.274 1.274 26 H -0.286 1.286 27 H -0.290 1.290 28 C 0.150 3.850 29 H 0.011 0.989 30 C 0.130 3.870 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.191 0.809 35 H 0.213 0.787 36 H 0.421 0.579 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.000 1.000 44 H 0.023 0.977 45 H 0.248 0.752 46 H 0.052 0.948 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.800 18.634 -3.108 30.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.240 6.240 3 C 0.152 3.848 4 C -0.275 4.275 5 C 0.023 3.977 6 N -0.261 5.261 7 C 0.195 3.805 8 O -0.299 6.299 9 C -0.256 4.256 10 C 0.365 3.635 11 O -0.466 6.466 12 N -0.322 5.322 13 C -0.012 4.012 14 C -0.147 4.147 15 C -0.114 4.114 16 H 0.094 0.906 17 C -0.157 4.157 18 C 0.055 3.945 19 N -0.338 5.338 20 C -0.367 4.367 21 H 0.089 0.911 22 C -0.253 4.253 23 N -0.595 5.595 24 Si 0.799 3.201 25 H -0.199 1.199 26 H -0.213 1.213 27 H -0.217 1.217 28 C 0.042 3.958 29 H 0.029 0.971 30 C 0.006 3.994 31 H 0.108 0.892 32 H 0.131 0.869 33 H 0.096 0.904 34 H 0.209 0.791 35 H 0.229 0.771 36 H 0.283 0.717 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.135 0.865 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.018 0.982 44 H 0.042 0.958 45 H 0.057 0.943 46 H 0.071 0.929 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.019 18.699 -1.971 29.722 hybrid contribution 0.715 -2.235 0.521 2.404 sum -22.304 16.464 -1.450 27.760 Atomic orbital electron populations 1.23608 0.74342 1.06230 1.03890 1.86105 1.25281 1.26188 1.86456 1.19271 0.89449 0.86607 0.89429 1.22560 1.03704 0.90751 1.10498 1.23241 0.87655 0.99176 0.87671 1.67413 1.08884 1.31117 1.18711 1.18832 0.84757 0.85537 0.91395 1.84720 1.14445 1.95117 1.35668 1.20118 0.92804 0.94169 1.18540 1.18162 0.78867 0.83188 0.83270 1.90770 1.57932 1.64764 1.33144 1.48220 1.50078 1.27279 1.06605 1.21947 0.97554 0.99039 0.82656 1.21834 0.96461 0.95528 1.00853 1.22178 0.96433 0.98476 0.94334 0.90630 1.22581 0.95675 0.98022 0.99430 1.21381 0.94081 0.94944 0.84048 1.44442 1.47431 1.27848 1.14123 1.19321 1.19777 1.02111 0.95460 0.91059 1.25520 0.99636 1.01384 0.98749 1.70145 1.32668 1.36250 1.20431 0.85135 0.77398 0.79204 0.78406 1.19905 1.21297 1.21737 1.21031 0.89121 0.90149 0.95536 0.97148 1.21241 0.91669 0.86224 1.00239 0.89190 0.86877 0.90361 0.79150 0.77056 0.71716 0.90085 0.88740 0.86479 0.90738 0.89384 0.90808 0.98198 0.95847 0.94306 0.92907 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.84 113.37 1.12 1.22 16 2 O -0.33 -6.94 10.03 -88.04 -0.88 -7.83 16 3 C 0.21 4.29 6.74 23.09 0.16 4.44 16 4 C -0.25 -2.86 9.09 22.42 0.20 -2.66 16 5 C 0.18 2.11 11.15 84.58 0.94 3.05 16 6 N -0.54 -11.09 10.37 -308.26 -3.20 -14.28 16 7 C 0.37 9.48 7.49 85.14 0.64 10.12 16 8 O -0.49 -13.04 13.02 -87.31 -1.14 -14.18 16 9 C -0.25 -6.82 3.66 -19.83 -0.07 -6.89 16 10 C 0.58 20.94 6.28 86.60 0.54 21.49 16 11 O -0.59 -27.72 16.48 -4.09 -0.07 -27.79 16 12 N -0.59 -19.22 3.02 -823.73 -2.48 -21.71 16 13 C 0.11 2.38 6.23 86.66 0.54 2.92 16 14 C -0.11 -2.24 5.72 30.56 0.17 -2.07 16 15 C -0.09 -2.96 2.62 -10.08 -0.03 -2.99 16 16 H 0.08 2.44 8.13 -2.39 -0.02 2.42 16 17 C -0.12 -4.03 6.54 31.62 0.21 -3.82 16 18 C 0.18 8.86 5.46 86.85 0.47 9.33 16 19 N -0.61 -32.34 3.35 -670.07 -2.24 -34.58 16 20 C -0.24 -13.96 9.88 84.03 0.83 -13.13 16 21 H 0.07 4.20 7.41 -2.91 -0.02 4.18 16 22 C -0.06 -3.52 5.49 84.86 0.47 -3.05 16 23 N -0.95 -57.90 10.43 21.65 0.23 -57.68 16 24 Si 0.97 48.12 29.55 68.60 2.03 50.15 16 25 H -0.27 -13.26 7.11 99.48 0.71 -12.56 16 26 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 27 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 28 C 0.15 6.29 2.74 45.46 0.12 6.41 16 29 H 0.01 0.49 7.93 -2.39 -0.02 0.47 16 30 C 0.13 5.33 5.66 85.59 0.48 5.82 16 31 H 0.09 0.28 7.71 -2.39 -0.02 0.26 16 32 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.08 0.42 7.71 -2.39 -0.02 0.40 16 34 H 0.19 0.45 6.45 -2.91 -0.02 0.43 16 35 H 0.21 0.53 8.06 -2.91 -0.02 0.51 16 36 H 0.42 7.19 9.06 -74.06 -0.67 6.52 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 1.66 6.07 -2.39 -0.01 1.64 16 39 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.07 1.50 7.98 -2.39 -0.02 1.48 16 41 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 43 H 0.00 -0.01 7.77 -2.39 -0.02 -0.03 16 44 H 0.02 1.28 7.19 -2.39 -0.02 1.26 16 45 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 46 H 0.05 2.57 6.75 -2.39 -0.02 2.56 16 47 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -89.05 377.50 -0.62 -89.66 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.34 Total: 8.03 kcal Atomic # 6 Polarization: 23.40 SS G_CDS: 6.80 Total: 30.20 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -7.70 Total: -128.25 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -2.09 Total: -49.79 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.15 kcal Total: -89.05 -0.62 -89.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042312255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.096 kcal (2) G-P(sol) polarization free energy of solvation -89.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds