Wall clock time and date at job start Wed Apr 1 2020 04:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 120.00046 * 2 1 4 4 O 1.21593 * 119.99517 * 175.40734 * 3 2 1 5 5 C 1.47515 * 119.99990 * 355.40642 * 3 2 1 6 6 C 1.39914 * 120.69608 * 47.83492 * 5 3 2 7 7 C 1.38446 * 118.54760 * 179.77759 * 6 5 3 8 8 C 1.38403 * 119.62310 * 0.49457 * 7 6 5 9 9 N 1.32354 * 120.60080 * 359.75312 * 8 7 6 10 10 C 1.32037 * 122.19525 * 359.97438 * 9 8 7 11 11 O 1.35429 * 119.79152 * 180.02562 * 10 9 8 12 12 C 1.51550 * 109.52423 * 179.79183 * 8 7 6 13 13 C 1.54320 * 105.22832 * 342.73149 * 12 8 7 14 14 C 1.51275 * 130.46283 * 180.18009 * 7 6 5 15 15 C 1.46496 * 119.99830 * 179.97438 * 2 1 3 16 16 H 1.09006 * 110.78204 * 183.24391 * 15 2 1 17 17 C 1.54325 * 110.72216 * 306.47819 * 15 2 1 18 18 N 1.47025 * 107.27133 * 140.55574 * 17 15 2 19 19 C 1.36937 * 125.64331 * 181.10006 * 18 17 15 20 20 H 1.07995 * 120.00681 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99677 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99748 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00063 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47220 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46832 * 120.00223 * 23 21 19 26 26 H 1.48504 * 109.47220 * 240.00014 * 23 21 19 27 27 C 1.47422 * 108.70328 * 1.05963 * 18 17 15 28 28 C 1.54906 * 104.83494 * 335.87430 * 27 18 17 29 29 H 1.09002 * 111.00290 * 278.89658 * 28 27 18 30 30 O 1.42900 * 111.00694 * 155.08220 * 28 27 18 31 31 H 1.08992 * 109.47657 * 275.20061 * 1 2 3 32 32 H 1.09006 * 109.46981 * 35.19694 * 1 2 3 33 33 H 1.09004 * 109.47568 * 155.19329 * 1 2 3 34 34 H 1.07997 * 120.72303 * 0.02562 * 6 5 3 35 35 H 0.96694 * 113.99537 * 269.97763 * 11 10 9 36 36 H 1.08997 * 110.29468 * 101.66719 * 12 8 7 37 37 H 1.08996 * 110.29147 * 223.79102 * 12 8 7 38 38 H 1.09002 * 110.81735 * 268.22220 * 13 12 8 39 39 H 1.08997 * 110.98843 * 144.75652 * 13 12 8 40 40 H 1.09001 * 110.31214 * 316.38842 * 14 7 6 41 41 H 1.09000 * 110.31047 * 78.55854 * 14 7 6 42 42 H 1.09008 * 109.88199 * 21.13949 * 17 15 2 43 43 H 1.08996 * 110.01483 * 260.04865 * 17 15 2 44 44 H 0.97003 * 119.99268 * 179.97438 * 22 21 19 45 45 H 1.08999 * 110.36712 * 217.03026 * 27 18 17 46 46 H 1.09008 * 110.36187 * 94.70905 * 27 18 17 47 47 H 0.96695 * 113.99580 * 61.45241 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3519 1.1688 0.0843 5 6 1.4049 2.4427 -0.1023 6 6 0.2894 2.6915 0.7047 7 6 -0.3634 3.9055 0.5751 8 6 0.0912 4.8317 -0.3475 9 7 1.1461 4.5688 -1.1023 10 6 1.8075 3.4293 -1.0147 11 8 2.8812 3.2116 -1.8108 12 6 -0.7871 6.0658 -0.3011 13 6 -2.0740 5.6206 0.4250 14 6 -1.5736 4.4517 1.3001 15 6 2.1974 -1.2687 0.0006 16 1 3.2720 -1.0949 0.0582 17 6 1.7273 -2.1701 1.1616 18 7 1.6777 -3.5483 0.6517 19 6 1.2871 -4.6496 1.3656 20 1 0.9811 -4.5448 2.3960 21 6 1.2846 -5.9011 0.7648 22 7 1.6582 -6.0290 -0.4908 23 14 0.7526 -7.4037 1.7387 24 1 0.3837 -6.9946 3.1178 25 1 -0.4202 -8.0316 1.0787 26 1 1.8708 -8.3794 1.7937 27 6 2.1171 -3.5478 -0.7555 28 6 1.8436 -2.1075 -1.2559 29 1 0.7958 -1.9810 -1.5284 30 8 2.6987 -1.7748 -2.3514 31 1 -0.3634 0.0931 1.0233 32 1 -0.3633 0.8398 -0.5924 33 1 -0.3634 -0.9328 -0.4312 34 1 -0.0525 1.9543 1.4160 35 1 2.6657 2.7948 -2.6563 36 1 -0.2933 6.8605 0.2581 37 1 -1.0202 6.4021 -1.3114 38 1 -2.8225 5.2770 -0.2890 39 1 -2.4714 6.4251 1.0436 40 1 -2.3434 3.6845 1.3827 41 1 -1.2910 4.8133 2.2888 42 1 0.7356 -1.8614 1.4925 43 1 2.4311 -2.1070 1.9915 44 1 1.6567 -6.9035 -0.9105 45 1 1.5374 -4.2670 -1.3341 46 1 3.1809 -3.7765 -0.8208 47 1 2.5809 -2.3391 -3.1277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047629216.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:06 Heat of formation + Delta-G solvation = -41.527684 kcal Electronic energy + Delta-G solvation = -31246.701829 eV Core-core repulsion = 27010.221179 eV Total energy + Delta-G solvation = -4236.480650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.37859 -39.74322 -38.27934 -37.59151 -35.56314 -35.22298 -34.81848 -33.17478 -31.84097 -29.49067 -28.56755 -28.09174 -27.35997 -26.69765 -24.63135 -23.88528 -22.98439 -21.39548 -20.54632 -20.48853 -19.09145 -18.63202 -17.48350 -17.34718 -17.12604 -16.56400 -16.45637 -15.85462 -15.50162 -14.92746 -14.82365 -14.61410 -14.14910 -13.88382 -13.62889 -13.47234 -13.30381 -13.28742 -12.97990 -12.78975 -12.61504 -12.45891 -12.30972 -12.08235 -11.82162 -11.80646 -11.65609 -11.50395 -11.33645 -11.27223 -11.02403 -10.89570 -10.23580 -10.11986 -10.01376 -9.93270 -9.77155 -9.51066 -9.29217 -8.84532 -8.78274 -8.41306 -6.99251 -5.78069 -3.21445 0.45451 0.84250 2.67725 2.88868 3.18424 3.32882 3.38380 3.39097 3.41194 3.98124 4.01722 4.35755 4.42521 4.45180 4.55460 4.60197 4.66065 4.81336 5.01468 5.10328 5.23206 5.26081 5.28703 5.34239 5.35567 5.44246 5.45263 5.49852 5.54844 5.58827 5.61207 5.71195 5.75567 5.80931 5.85919 6.03659 6.08962 6.13574 6.42388 6.54360 6.83608 7.28006 7.30222 7.44039 7.49841 7.62391 7.66166 8.10398 8.20444 8.25101 9.07132 9.67678 10.29767 11.25813 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.002657 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.899993 B =10534.142394 C =11534.233182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.595 5.595 3 C 0.566 3.434 4 O -0.513 6.513 5 C -0.188 4.188 6 C -0.021 4.021 7 C -0.168 4.168 8 C 0.158 3.842 9 N -0.502 5.502 10 C 0.365 3.635 11 O -0.463 6.463 12 C -0.073 4.073 13 C -0.118 4.118 14 C -0.076 4.076 15 C 0.137 3.863 16 H 0.113 0.887 17 C 0.131 3.869 18 N -0.599 5.599 19 C -0.224 4.224 20 H 0.081 0.919 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.918 3.082 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.128 3.872 28 C 0.064 3.936 29 H 0.060 0.940 30 O -0.564 6.564 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.146 0.854 35 H 0.403 0.597 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.033 0.967 43 H 0.033 0.967 44 H 0.253 0.747 45 H 0.112 0.888 46 H 0.026 0.974 47 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.342 21.376 -1.335 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.327 5.327 3 C 0.352 3.648 4 O -0.388 6.388 5 C -0.194 4.194 6 C -0.047 4.047 7 C -0.170 4.170 8 C 0.020 3.980 9 N -0.221 5.221 10 C 0.185 3.815 11 O -0.270 6.270 12 C -0.111 4.111 13 C -0.156 4.156 14 C -0.114 4.114 15 C 0.034 3.966 16 H 0.131 0.869 17 C 0.004 3.996 18 N -0.326 5.326 19 C -0.352 4.352 20 H 0.099 0.901 21 C -0.205 4.205 22 N -0.571 5.571 23 Si 0.748 3.252 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.002 3.998 28 C 0.003 3.997 29 H 0.077 0.923 30 O -0.368 6.368 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.164 0.836 35 H 0.262 0.738 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.130 0.870 46 H 0.044 0.956 47 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -8.833 22.416 -1.064 24.117 hybrid contribution -0.792 -2.147 0.265 2.304 sum -9.625 20.269 -0.799 22.453 Atomic orbital electron populations 1.21943 0.79905 1.03564 1.01588 1.47687 1.06777 1.05576 1.72680 1.17789 0.86987 0.82749 0.77296 1.90832 1.13139 1.86667 1.48140 1.20933 0.98497 0.96847 1.03154 1.21269 0.91191 0.95988 0.96211 1.21373 1.00367 0.95114 1.00166 1.21809 0.90181 0.96073 0.89939 1.66317 1.07653 1.21115 1.26989 1.18784 0.85375 0.86622 0.90693 1.84799 1.26793 1.82558 1.32836 1.21090 0.93513 0.93766 1.02684 1.22317 0.96499 0.98038 0.98771 1.20959 0.93993 0.97816 0.98594 1.22189 0.98223 0.81174 0.95033 0.86870 1.21536 0.98300 0.85848 0.93881 1.44280 1.77996 1.01261 1.09112 1.19129 1.36868 0.84492 0.94709 0.90117 1.24817 1.01495 0.97635 0.96584 1.69758 1.53742 1.22457 1.11117 0.85952 0.77830 0.82604 0.78812 1.20440 1.21665 1.21622 1.22591 0.99238 0.91415 0.86550 1.23755 0.92327 0.97602 0.86000 0.92254 1.86438 1.64133 1.60281 1.25985 0.92272 0.91575 0.89901 0.83611 0.73824 0.88851 0.89338 0.90393 0.89671 0.89940 0.89605 0.94951 0.94922 0.93589 0.87004 0.95637 0.77797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 7.58 59.85 0.45 1.34 16 2 N -0.59 -9.46 2.89 -173.07 -0.50 -9.96 16 3 C 0.57 9.59 7.00 -12.48 -0.09 9.50 16 4 O -0.51 -10.80 15.90 -4.22 -0.07 -10.87 16 5 C -0.19 -2.62 4.95 -104.72 -0.52 -3.14 16 6 C -0.02 -0.23 7.88 -38.88 -0.31 -0.53 16 7 C -0.17 -1.57 6.14 -104.20 -0.64 -2.21 16 8 C 0.16 1.66 7.32 -81.89 -0.60 1.06 16 9 N -0.50 -6.71 10.36 -8.88 -0.09 -6.80 16 10 C 0.37 5.25 7.75 -16.69 -0.13 5.12 16 11 O -0.46 -6.73 12.60 -27.48 -0.35 -7.07 16 12 C -0.07 -0.47 6.77 -26.77 -0.18 -0.66 16 13 C -0.12 -0.53 7.08 -25.33 -0.18 -0.71 16 14 C -0.08 -0.44 6.77 -26.90 -0.18 -0.62 16 15 C 0.14 2.62 3.08 -66.10 -0.20 2.42 16 16 H 0.11 2.46 7.01 -51.93 -0.36 2.09 16 17 C 0.13 2.71 6.87 -3.06 -0.02 2.69 16 18 N -0.60 -14.79 3.39 -170.07 -0.58 -15.37 16 19 C -0.22 -6.00 10.27 -15.06 -0.15 -6.15 16 20 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 21 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 22 N -0.92 -25.82 10.09 55.49 0.56 -25.26 16 23 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 27 C 0.13 3.00 5.62 -2.53 -0.01 2.99 16 28 C 0.06 1.22 3.95 -24.58 -0.10 1.12 16 29 H 0.06 1.07 6.46 -51.93 -0.34 0.73 16 30 O -0.56 -10.18 13.47 -35.23 -0.47 -10.66 16 31 H 0.06 0.61 6.97 -51.93 -0.36 0.25 16 32 H 0.07 0.68 6.24 -51.93 -0.32 0.36 16 33 H 0.08 1.07 6.47 -51.93 -0.34 0.73 16 34 H 0.15 1.32 6.27 -52.49 -0.33 0.99 16 35 H 0.40 4.01 9.06 45.56 0.41 4.42 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.03 0.62 6.84 -51.92 -0.35 0.27 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 45 H 0.11 2.87 5.87 -51.93 -0.30 2.57 16 46 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 47 H 0.38 5.25 9.11 45.56 0.42 5.66 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -35.53 375.65 -8.62 -44.16 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -4.81 Total: 8.00 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: -2.95 Total: 11.85 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -0.61 Total: -57.39 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.89 Total: -28.60 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.53 -8.62 -44.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047629216.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.628 kcal (2) G-P(sol) polarization free energy of solvation -35.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds