Wall clock time and date at job start Wed Apr 1 2020 04:45:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.34780 * 120.00046 * 2 1
4 4 O 1.21593 * 119.99517 * 175.40734 * 3 2 1
5 5 C 1.47515 * 119.99990 * 355.40642 * 3 2 1
6 6 C 1.39914 * 120.69608 * 47.83492 * 5 3 2
7 7 C 1.38446 * 118.54760 * 179.77759 * 6 5 3
8 8 C 1.38403 * 119.62310 * 0.49457 * 7 6 5
9 9 N 1.32354 * 120.60080 * 359.75312 * 8 7 6
10 10 C 1.32037 * 122.19525 * 359.97438 * 9 8 7
11 11 O 1.35429 * 119.79152 * 180.02562 * 10 9 8
12 12 C 1.51550 * 109.52423 * 179.79183 * 8 7 6
13 13 C 1.54320 * 105.22832 * 342.73149 * 12 8 7
14 14 C 1.51275 * 130.46283 * 180.18009 * 7 6 5
15 15 C 1.46496 * 119.99830 * 179.97438 * 2 1 3
16 16 H 1.09006 * 110.78204 * 183.24391 * 15 2 1
17 17 C 1.54325 * 110.72216 * 306.47819 * 15 2 1
18 18 N 1.47025 * 107.27133 * 140.55574 * 17 15 2
19 19 C 1.36937 * 125.64331 * 181.10006 * 18 17 15
20 20 H 1.07995 * 120.00681 * 359.97438 * 19 18 17
21 21 C 1.38817 * 119.99677 * 179.97438 * 19 18 17
22 22 N 1.31625 * 119.99748 * 0.02562 * 21 19 18
23 23 Si 1.86801 * 120.00063 * 179.97438 * 21 19 18
24 24 H 1.48496 * 109.47220 * 0.02562 * 23 21 19
25 25 H 1.48505 * 109.46832 * 120.00223 * 23 21 19
26 26 H 1.48504 * 109.47220 * 240.00014 * 23 21 19
27 27 C 1.47422 * 108.70328 * 1.05963 * 18 17 15
28 28 C 1.54906 * 104.83494 * 335.87430 * 27 18 17
29 29 H 1.09002 * 111.00290 * 278.89658 * 28 27 18
30 30 O 1.42900 * 111.00694 * 155.08220 * 28 27 18
31 31 H 1.08992 * 109.47657 * 275.20061 * 1 2 3
32 32 H 1.09006 * 109.46981 * 35.19694 * 1 2 3
33 33 H 1.09004 * 109.47568 * 155.19329 * 1 2 3
34 34 H 1.07997 * 120.72303 * 0.02562 * 6 5 3
35 35 H 0.96694 * 113.99537 * 269.97763 * 11 10 9
36 36 H 1.08997 * 110.29468 * 101.66719 * 12 8 7
37 37 H 1.08996 * 110.29147 * 223.79102 * 12 8 7
38 38 H 1.09002 * 110.81735 * 268.22220 * 13 12 8
39 39 H 1.08997 * 110.98843 * 144.75652 * 13 12 8
40 40 H 1.09001 * 110.31214 * 316.38842 * 14 7 6
41 41 H 1.09000 * 110.31047 * 78.55854 * 14 7 6
42 42 H 1.09008 * 109.88199 * 21.13949 * 17 15 2
43 43 H 1.08996 * 110.01483 * 260.04865 * 17 15 2
44 44 H 0.97003 * 119.99268 * 179.97438 * 22 21 19
45 45 H 1.08999 * 110.36712 * 217.03026 * 27 18 17
46 46 H 1.09008 * 110.36187 * 94.70905 * 27 18 17
47 47 H 0.96695 * 113.99580 * 61.45241 * 30 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 3.3519 1.1688 0.0843
5 6 1.4049 2.4427 -0.1023
6 6 0.2894 2.6915 0.7047
7 6 -0.3634 3.9055 0.5751
8 6 0.0912 4.8317 -0.3475
9 7 1.1461 4.5688 -1.1023
10 6 1.8075 3.4293 -1.0147
11 8 2.8812 3.2116 -1.8108
12 6 -0.7871 6.0658 -0.3011
13 6 -2.0740 5.6206 0.4250
14 6 -1.5736 4.4517 1.3001
15 6 2.1974 -1.2687 0.0006
16 1 3.2720 -1.0949 0.0582
17 6 1.7273 -2.1701 1.1616
18 7 1.6777 -3.5483 0.6517
19 6 1.2871 -4.6496 1.3656
20 1 0.9811 -4.5448 2.3960
21 6 1.2846 -5.9011 0.7648
22 7 1.6582 -6.0290 -0.4908
23 14 0.7526 -7.4037 1.7387
24 1 0.3837 -6.9946 3.1178
25 1 -0.4202 -8.0316 1.0787
26 1 1.8708 -8.3794 1.7937
27 6 2.1171 -3.5478 -0.7555
28 6 1.8436 -2.1075 -1.2559
29 1 0.7958 -1.9810 -1.5284
30 8 2.6987 -1.7748 -2.3514
31 1 -0.3634 0.0931 1.0233
32 1 -0.3633 0.8398 -0.5924
33 1 -0.3634 -0.9328 -0.4312
34 1 -0.0525 1.9543 1.4160
35 1 2.6657 2.7948 -2.6563
36 1 -0.2933 6.8605 0.2581
37 1 -1.0202 6.4021 -1.3114
38 1 -2.8225 5.2770 -0.2890
39 1 -2.4714 6.4251 1.0436
40 1 -2.3434 3.6845 1.3827
41 1 -1.2910 4.8133 2.2888
42 1 0.7356 -1.8614 1.4925
43 1 2.4311 -2.1070 1.9915
44 1 1.6567 -6.9035 -0.9105
45 1 1.5374 -4.2670 -1.3341
46 1 3.1809 -3.7765 -0.8208
47 1 2.5809 -2.3391 -3.1277
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001047629216.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:45:05
Heat of formation + Delta-G solvation = -71.124330 kcal
Electronic energy + Delta-G solvation = -31247.985236 eV
Core-core repulsion = 27010.221179 eV
Total energy + Delta-G solvation = -4237.764057 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 1.17 seconds
Orbital eigenvalues (eV)
-42.32052 -41.00795 -39.50226 -38.84332 -36.78301 -36.53096 -36.12113 -34.33433
-33.50648 -30.68880 -29.90710 -29.02633 -28.64294 -27.95176 -26.40009 -24.72121
-24.08234 -22.40010 -22.13079 -21.56565 -20.40029 -19.63824 -19.05359 -18.78582
-18.30389 -17.85132 -17.51924 -17.14179 -16.63184 -16.17064 -16.09669 -15.75828
-15.49280 -15.37911 -14.90275 -14.78484 -14.36047 -14.26615 -14.08322 -13.82078
-13.74402 -13.56264 -13.45673 -13.26504 -13.13050 -13.05335 -12.88519 -12.78362
-12.75660 -12.71515 -12.04528 -12.00781 -11.94442 -11.74675 -11.52169 -11.36585
-10.98979 -10.86450 -10.78216 -10.43097 -9.82034 -9.61368 -8.98636 -7.81926
-5.28763 -0.46290 -0.00299 1.44392 1.48290 1.49825 1.59598 1.71664
2.25972 2.47094 2.49092 3.03180 3.15960 3.30408 3.36781 3.55771
3.64185 3.75046 3.82387 3.84873 4.00223 4.07290 4.13044 4.21083
4.25184 4.32050 4.40658 4.46588 4.53737 4.63754 4.76450 4.81878
4.83629 4.85883 4.88818 4.95096 4.97079 5.11205 5.26019 5.34864
5.37679 5.39589 5.43243 5.45317 5.65582 6.18851 6.19557 6.42949
6.74678 6.80876 6.95142 7.03291 7.67931 8.30330 9.20159
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.018038 B = 0.002657 C = 0.002427
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1551.899993 B =10534.142394 C =11534.233182
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.067 3.933
2 N -0.590 5.590
3 C 0.568 3.432
4 O -0.566 6.566
5 C -0.205 4.205
6 C -0.017 4.017
7 C -0.159 4.159
8 C 0.148 3.852
9 N -0.525 5.525
10 C 0.346 3.654
11 O -0.486 6.486
12 C -0.074 4.074
13 C -0.109 4.109
14 C -0.075 4.075
15 C 0.148 3.852
16 H 0.081 0.919
17 C 0.134 3.866
18 N -0.617 5.617
19 C -0.238 4.238
20 H 0.087 0.913
21 C -0.063 4.063
22 N -0.949 5.949
23 Si 0.983 3.017
24 H -0.265 1.265
25 H -0.287 1.287
26 H -0.297 1.297
27 C 0.136 3.864
28 C 0.085 3.915
29 H 0.081 0.919
30 O -0.571 6.571
31 H 0.085 0.915
32 H 0.088 0.912
33 H 0.078 0.922
34 H 0.167 0.833
35 H 0.415 0.585
36 H 0.104 0.896
37 H 0.094 0.906
38 H 0.085 0.915
39 H 0.110 0.890
40 H 0.101 0.899
41 H 0.099 0.901
42 H 0.058 0.942
43 H 0.023 0.977
44 H 0.249 0.751
45 H 0.091 0.909
46 H -0.012 1.012
47 H 0.393 0.607
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.900 23.243 -0.029 27.082
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 N -0.321 5.321
3 C 0.356 3.644
4 O -0.445 6.445
5 C -0.212 4.212
6 C -0.043 4.043
7 C -0.161 4.161
8 C 0.010 3.990
9 N -0.244 5.244
10 C 0.167 3.833
11 O -0.295 6.295
12 C -0.112 4.112
13 C -0.146 4.146
14 C -0.112 4.112
15 C 0.043 3.957
16 H 0.099 0.901
17 C 0.008 3.992
18 N -0.344 5.344
19 C -0.367 4.367
20 H 0.105 0.895
21 C -0.256 4.256
22 N -0.598 5.598
23 Si 0.812 3.188
24 H -0.189 1.189
25 H -0.214 1.214
26 H -0.224 1.224
27 C 0.009 3.991
28 C 0.024 3.976
29 H 0.099 0.901
30 O -0.379 6.379
31 H 0.103 0.897
32 H 0.107 0.893
33 H 0.097 0.903
34 H 0.184 0.816
35 H 0.276 0.724
36 H 0.122 0.878
37 H 0.112 0.888
38 H 0.104 0.896
39 H 0.128 0.872
40 H 0.119 0.881
41 H 0.118 0.882
42 H 0.076 0.924
43 H 0.041 0.959
44 H 0.059 0.941
45 H 0.109 0.891
46 H 0.006 0.994
47 H 0.243 0.757
Dipole moment (debyes) X Y Z Total
from point charges -12.439 24.305 0.234 27.304
hybrid contribution 0.297 -2.623 -0.150 2.644
sum -12.142 21.682 0.084 24.851
Atomic orbital electron populations
1.22237 0.77115 1.04329 1.03734 1.47659 1.08283 1.04040 1.72089
1.18236 0.86483 0.83752 0.75934 1.90798 1.15596 1.87473 1.50641
1.20672 1.00077 0.95344 1.05088 1.21474 0.89979 0.97182 0.95621
1.21835 1.00938 0.93902 0.99411 1.22681 0.89309 0.97886 0.89119
1.66366 1.08928 1.20717 1.28388 1.18932 0.85785 0.87342 0.91278
1.84747 1.27990 1.82900 1.33855 1.21308 0.93831 0.92362 1.03687
1.22364 0.95330 0.98207 0.98740 1.21132 0.92596 0.98641 0.98850
1.21747 0.96940 0.82520 0.94500 0.90088 1.21598 0.99258 0.84333
0.94005 1.44519 1.77823 1.02451 1.09654 1.19496 1.36504 0.85416
0.95242 0.89485 1.25650 1.02005 1.00334 0.97605 1.69979 1.54744
1.22624 1.12447 0.84938 0.76923 0.78827 0.78161 1.18935 1.21420
1.22397 1.22353 0.96438 0.93851 0.86420 1.23457 0.93388 0.94464
0.86282 0.90136 1.86417 1.64209 1.60720 1.26505 0.89657 0.89332
0.90310 0.81564 0.72433 0.87806 0.88768 0.89593 0.87202 0.88072
0.88238 0.92406 0.95925 0.94092 0.89141 0.99370 0.75687
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.44 7.58 127.77 0.97 2.41 16
2 N -0.59 -18.35 2.89 -819.72 -2.37 -20.71 16
3 C 0.57 19.44 7.00 86.69 0.61 20.05 16
4 O -0.57 -24.98 15.90 5.08 0.08 -24.90 16
5 C -0.21 -5.62 4.95 -19.93 -0.10 -5.72 16
6 C -0.02 -0.33 7.88 22.73 0.18 -0.15 16
7 C -0.16 -2.46 6.14 -19.59 -0.12 -2.58 16
8 C 0.15 2.78 7.32 42.79 0.31 3.09 16
9 N -0.52 -13.72 10.36 -295.11 -3.06 -16.78 16
10 C 0.35 10.05 7.75 85.16 0.66 10.71 16
11 O -0.49 -14.85 12.60 -78.16 -0.99 -15.83 16
12 C -0.07 -0.72 6.77 30.57 0.21 -0.52 16
13 C -0.11 -0.45 7.08 31.50 0.22 -0.23 16
14 C -0.07 -0.50 6.77 30.49 0.21 -0.30 16
15 C 0.15 5.72 3.08 46.18 0.14 5.87 16
16 H 0.08 3.70 7.01 -2.38 -0.02 3.69 16
17 C 0.13 5.53 6.87 86.73 0.60 6.13 16
18 N -0.62 -30.89 3.39 -691.98 -2.35 -33.24 16
19 C -0.24 -12.80 10.27 84.03 0.86 -11.93 16
20 H 0.09 4.45 7.83 -2.91 -0.02 4.42 16
21 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16
22 N -0.95 -54.33 10.09 21.65 0.22 -54.11 16
23 Si 0.98 43.93 29.55 68.60 2.03 45.95 16
24 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16
25 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16
26 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16
27 C 0.14 6.57 5.62 86.85 0.49 7.06 16
28 C 0.08 3.27 3.95 31.99 0.13 3.39 16
29 H 0.08 2.80 6.46 -2.39 -0.02 2.78 16
30 O -0.57 -20.89 13.47 -148.98 -2.01 -22.90 16
31 H 0.09 1.42 6.97 -2.39 -0.02 1.40 16
32 H 0.09 1.55 6.24 -2.38 -0.01 1.53 16
33 H 0.08 1.81 6.47 -2.38 -0.02 1.79 16
34 H 0.17 2.40 6.27 -2.91 -0.02 2.38 16
35 H 0.41 8.95 9.06 -74.06 -0.67 8.28 16
36 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16
37 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16
38 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16
39 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16
40 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16
41 H 0.10 0.49 8.14 -2.39 -0.02 0.48 16
42 H 0.06 2.11 6.84 -2.38 -0.02 2.09 16
43 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16
44 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16
45 H 0.09 4.80 5.87 -2.39 -0.01 4.79 16
46 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16
47 H 0.39 11.02 9.11 -74.06 -0.67 10.34 16
Total: -1.00 -80.87 375.65 -2.91 -83.78
By element:
Atomic # 1 Polarization: 24.74 SS G_CDS: -0.30 Total: 24.44 kcal
Atomic # 6 Polarization: 28.47 SS G_CDS: 5.83 Total: 34.30 kcal
Atomic # 7 Polarization: -117.29 SS G_CDS: -7.55 Total: -124.85 kcal
Atomic # 8 Polarization: -60.72 SS G_CDS: -2.91 Total: -63.63 kcal
Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal
Total: -80.87 -2.91 -83.78 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001047629216.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.654 kcal
(2) G-P(sol) polarization free energy of solvation -80.866 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.212 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.912 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.778 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.124 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.17 seconds