Wall clock time and date at job start Wed Apr 1 2020 04:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 120.00046 * 2 1 4 4 O 1.21593 * 119.99517 * 175.40734 * 3 2 1 5 5 C 1.47515 * 119.99990 * 355.40642 * 3 2 1 6 6 C 1.39914 * 120.69608 * 47.83492 * 5 3 2 7 7 C 1.38446 * 118.54760 * 179.77759 * 6 5 3 8 8 C 1.38403 * 119.62310 * 0.49457 * 7 6 5 9 9 N 1.32354 * 120.60080 * 359.75312 * 8 7 6 10 10 C 1.32037 * 122.19525 * 359.97438 * 9 8 7 11 11 O 1.35429 * 119.79152 * 180.02562 * 10 9 8 12 12 C 1.51550 * 109.52423 * 179.79183 * 8 7 6 13 13 C 1.54320 * 105.22832 * 342.73149 * 12 8 7 14 14 C 1.51275 * 130.46283 * 180.18009 * 7 6 5 15 15 C 1.46496 * 119.99830 * 179.97438 * 2 1 3 16 16 H 1.09006 * 110.78204 * 183.24391 * 15 2 1 17 17 C 1.54325 * 110.72216 * 306.47819 * 15 2 1 18 18 N 1.47025 * 107.27133 * 140.55574 * 17 15 2 19 19 C 1.36937 * 125.64331 * 181.10006 * 18 17 15 20 20 H 1.07995 * 120.00681 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99677 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99748 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00063 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47220 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46832 * 120.00223 * 23 21 19 26 26 H 1.48504 * 109.47220 * 240.00014 * 23 21 19 27 27 C 1.47422 * 108.70328 * 1.05963 * 18 17 15 28 28 C 1.54906 * 104.83494 * 335.87430 * 27 18 17 29 29 H 1.09002 * 111.00290 * 278.89658 * 28 27 18 30 30 O 1.42900 * 111.00694 * 155.08220 * 28 27 18 31 31 H 1.08992 * 109.47657 * 275.20061 * 1 2 3 32 32 H 1.09006 * 109.46981 * 35.19694 * 1 2 3 33 33 H 1.09004 * 109.47568 * 155.19329 * 1 2 3 34 34 H 1.07997 * 120.72303 * 0.02562 * 6 5 3 35 35 H 0.96694 * 113.99537 * 269.97763 * 11 10 9 36 36 H 1.08997 * 110.29468 * 101.66719 * 12 8 7 37 37 H 1.08996 * 110.29147 * 223.79102 * 12 8 7 38 38 H 1.09002 * 110.81735 * 268.22220 * 13 12 8 39 39 H 1.08997 * 110.98843 * 144.75652 * 13 12 8 40 40 H 1.09001 * 110.31214 * 316.38842 * 14 7 6 41 41 H 1.09000 * 110.31047 * 78.55854 * 14 7 6 42 42 H 1.09008 * 109.88199 * 21.13949 * 17 15 2 43 43 H 1.08996 * 110.01483 * 260.04865 * 17 15 2 44 44 H 0.97003 * 119.99268 * 179.97438 * 22 21 19 45 45 H 1.08999 * 110.36712 * 217.03026 * 27 18 17 46 46 H 1.09008 * 110.36187 * 94.70905 * 27 18 17 47 47 H 0.96695 * 113.99580 * 61.45241 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3519 1.1688 0.0843 5 6 1.4049 2.4427 -0.1023 6 6 0.2894 2.6915 0.7047 7 6 -0.3634 3.9055 0.5751 8 6 0.0912 4.8317 -0.3475 9 7 1.1461 4.5688 -1.1023 10 6 1.8075 3.4293 -1.0147 11 8 2.8812 3.2116 -1.8108 12 6 -0.7871 6.0658 -0.3011 13 6 -2.0740 5.6206 0.4250 14 6 -1.5736 4.4517 1.3001 15 6 2.1974 -1.2687 0.0006 16 1 3.2720 -1.0949 0.0582 17 6 1.7273 -2.1701 1.1616 18 7 1.6777 -3.5483 0.6517 19 6 1.2871 -4.6496 1.3656 20 1 0.9811 -4.5448 2.3960 21 6 1.2846 -5.9011 0.7648 22 7 1.6582 -6.0290 -0.4908 23 14 0.7526 -7.4037 1.7387 24 1 0.3837 -6.9946 3.1178 25 1 -0.4202 -8.0316 1.0787 26 1 1.8708 -8.3794 1.7937 27 6 2.1171 -3.5478 -0.7555 28 6 1.8436 -2.1075 -1.2559 29 1 0.7958 -1.9810 -1.5284 30 8 2.6987 -1.7748 -2.3514 31 1 -0.3634 0.0931 1.0233 32 1 -0.3633 0.8398 -0.5924 33 1 -0.3634 -0.9328 -0.4312 34 1 -0.0525 1.9543 1.4160 35 1 2.6657 2.7948 -2.6563 36 1 -0.2933 6.8605 0.2581 37 1 -1.0202 6.4021 -1.3114 38 1 -2.8225 5.2770 -0.2890 39 1 -2.4714 6.4251 1.0436 40 1 -2.3434 3.6845 1.3827 41 1 -1.2910 4.8133 2.2888 42 1 0.7356 -1.8614 1.4925 43 1 2.4311 -2.1070 1.9915 44 1 1.6567 -6.9035 -0.9105 45 1 1.5374 -4.2670 -1.3341 46 1 3.1809 -3.7765 -0.8208 47 1 2.5809 -2.3391 -3.1277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047629216.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:05 Heat of formation + Delta-G solvation = -71.124330 kcal Electronic energy + Delta-G solvation = -31247.985236 eV Core-core repulsion = 27010.221179 eV Total energy + Delta-G solvation = -4237.764057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.32052 -41.00795 -39.50226 -38.84332 -36.78301 -36.53096 -36.12113 -34.33433 -33.50648 -30.68880 -29.90710 -29.02633 -28.64294 -27.95176 -26.40009 -24.72121 -24.08234 -22.40010 -22.13079 -21.56565 -20.40029 -19.63824 -19.05359 -18.78582 -18.30389 -17.85132 -17.51924 -17.14179 -16.63184 -16.17064 -16.09669 -15.75828 -15.49280 -15.37911 -14.90275 -14.78484 -14.36047 -14.26615 -14.08322 -13.82078 -13.74402 -13.56264 -13.45673 -13.26504 -13.13050 -13.05335 -12.88519 -12.78362 -12.75660 -12.71515 -12.04528 -12.00781 -11.94442 -11.74675 -11.52169 -11.36585 -10.98979 -10.86450 -10.78216 -10.43097 -9.82034 -9.61368 -8.98636 -7.81926 -5.28763 -0.46290 -0.00299 1.44392 1.48290 1.49825 1.59598 1.71664 2.25972 2.47094 2.49092 3.03180 3.15960 3.30408 3.36781 3.55771 3.64185 3.75046 3.82387 3.84873 4.00223 4.07290 4.13044 4.21083 4.25184 4.32050 4.40658 4.46588 4.53737 4.63754 4.76450 4.81878 4.83629 4.85883 4.88818 4.95096 4.97079 5.11205 5.26019 5.34864 5.37679 5.39589 5.43243 5.45317 5.65582 6.18851 6.19557 6.42949 6.74678 6.80876 6.95142 7.03291 7.67931 8.30330 9.20159 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.002657 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.899993 B =10534.142394 C =11534.233182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.590 5.590 3 C 0.568 3.432 4 O -0.566 6.566 5 C -0.205 4.205 6 C -0.017 4.017 7 C -0.159 4.159 8 C 0.148 3.852 9 N -0.525 5.525 10 C 0.346 3.654 11 O -0.486 6.486 12 C -0.074 4.074 13 C -0.109 4.109 14 C -0.075 4.075 15 C 0.148 3.852 16 H 0.081 0.919 17 C 0.134 3.866 18 N -0.617 5.617 19 C -0.238 4.238 20 H 0.087 0.913 21 C -0.063 4.063 22 N -0.949 5.949 23 Si 0.983 3.017 24 H -0.265 1.265 25 H -0.287 1.287 26 H -0.297 1.297 27 C 0.136 3.864 28 C 0.085 3.915 29 H 0.081 0.919 30 O -0.571 6.571 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.167 0.833 35 H 0.415 0.585 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.023 0.977 44 H 0.249 0.751 45 H 0.091 0.909 46 H -0.012 1.012 47 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.900 23.243 -0.029 27.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.321 5.321 3 C 0.356 3.644 4 O -0.445 6.445 5 C -0.212 4.212 6 C -0.043 4.043 7 C -0.161 4.161 8 C 0.010 3.990 9 N -0.244 5.244 10 C 0.167 3.833 11 O -0.295 6.295 12 C -0.112 4.112 13 C -0.146 4.146 14 C -0.112 4.112 15 C 0.043 3.957 16 H 0.099 0.901 17 C 0.008 3.992 18 N -0.344 5.344 19 C -0.367 4.367 20 H 0.105 0.895 21 C -0.256 4.256 22 N -0.598 5.598 23 Si 0.812 3.188 24 H -0.189 1.189 25 H -0.214 1.214 26 H -0.224 1.224 27 C 0.009 3.991 28 C 0.024 3.976 29 H 0.099 0.901 30 O -0.379 6.379 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.184 0.816 35 H 0.276 0.724 36 H 0.122 0.878 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.128 0.872 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.076 0.924 43 H 0.041 0.959 44 H 0.059 0.941 45 H 0.109 0.891 46 H 0.006 0.994 47 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -12.439 24.305 0.234 27.304 hybrid contribution 0.297 -2.623 -0.150 2.644 sum -12.142 21.682 0.084 24.851 Atomic orbital electron populations 1.22237 0.77115 1.04329 1.03734 1.47659 1.08283 1.04040 1.72089 1.18236 0.86483 0.83752 0.75934 1.90798 1.15596 1.87473 1.50641 1.20672 1.00077 0.95344 1.05088 1.21474 0.89979 0.97182 0.95621 1.21835 1.00938 0.93902 0.99411 1.22681 0.89309 0.97886 0.89119 1.66366 1.08928 1.20717 1.28388 1.18932 0.85785 0.87342 0.91278 1.84747 1.27990 1.82900 1.33855 1.21308 0.93831 0.92362 1.03687 1.22364 0.95330 0.98207 0.98740 1.21132 0.92596 0.98641 0.98850 1.21747 0.96940 0.82520 0.94500 0.90088 1.21598 0.99258 0.84333 0.94005 1.44519 1.77823 1.02451 1.09654 1.19496 1.36504 0.85416 0.95242 0.89485 1.25650 1.02005 1.00334 0.97605 1.69979 1.54744 1.22624 1.12447 0.84938 0.76923 0.78827 0.78161 1.18935 1.21420 1.22397 1.22353 0.96438 0.93851 0.86420 1.23457 0.93388 0.94464 0.86282 0.90136 1.86417 1.64209 1.60720 1.26505 0.89657 0.89332 0.90310 0.81564 0.72433 0.87806 0.88768 0.89593 0.87202 0.88072 0.88238 0.92406 0.95925 0.94092 0.89141 0.99370 0.75687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.44 7.58 127.77 0.97 2.41 16 2 N -0.59 -18.35 2.89 -819.72 -2.37 -20.71 16 3 C 0.57 19.44 7.00 86.69 0.61 20.05 16 4 O -0.57 -24.98 15.90 5.08 0.08 -24.90 16 5 C -0.21 -5.62 4.95 -19.93 -0.10 -5.72 16 6 C -0.02 -0.33 7.88 22.73 0.18 -0.15 16 7 C -0.16 -2.46 6.14 -19.59 -0.12 -2.58 16 8 C 0.15 2.78 7.32 42.79 0.31 3.09 16 9 N -0.52 -13.72 10.36 -295.11 -3.06 -16.78 16 10 C 0.35 10.05 7.75 85.16 0.66 10.71 16 11 O -0.49 -14.85 12.60 -78.16 -0.99 -15.83 16 12 C -0.07 -0.72 6.77 30.57 0.21 -0.52 16 13 C -0.11 -0.45 7.08 31.50 0.22 -0.23 16 14 C -0.07 -0.50 6.77 30.49 0.21 -0.30 16 15 C 0.15 5.72 3.08 46.18 0.14 5.87 16 16 H 0.08 3.70 7.01 -2.38 -0.02 3.69 16 17 C 0.13 5.53 6.87 86.73 0.60 6.13 16 18 N -0.62 -30.89 3.39 -691.98 -2.35 -33.24 16 19 C -0.24 -12.80 10.27 84.03 0.86 -11.93 16 20 H 0.09 4.45 7.83 -2.91 -0.02 4.42 16 21 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 22 N -0.95 -54.33 10.09 21.65 0.22 -54.11 16 23 Si 0.98 43.93 29.55 68.60 2.03 45.95 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 25 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 26 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 27 C 0.14 6.57 5.62 86.85 0.49 7.06 16 28 C 0.08 3.27 3.95 31.99 0.13 3.39 16 29 H 0.08 2.80 6.46 -2.39 -0.02 2.78 16 30 O -0.57 -20.89 13.47 -148.98 -2.01 -22.90 16 31 H 0.09 1.42 6.97 -2.39 -0.02 1.40 16 32 H 0.09 1.55 6.24 -2.38 -0.01 1.53 16 33 H 0.08 1.81 6.47 -2.38 -0.02 1.79 16 34 H 0.17 2.40 6.27 -2.91 -0.02 2.38 16 35 H 0.41 8.95 9.06 -74.06 -0.67 8.28 16 36 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.10 0.49 8.14 -2.39 -0.02 0.48 16 42 H 0.06 2.11 6.84 -2.38 -0.02 2.09 16 43 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 45 H 0.09 4.80 5.87 -2.39 -0.01 4.79 16 46 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 47 H 0.39 11.02 9.11 -74.06 -0.67 10.34 16 Total: -1.00 -80.87 375.65 -2.91 -83.78 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -0.30 Total: 24.44 kcal Atomic # 6 Polarization: 28.47 SS G_CDS: 5.83 Total: 34.30 kcal Atomic # 7 Polarization: -117.29 SS G_CDS: -7.55 Total: -124.85 kcal Atomic # 8 Polarization: -60.72 SS G_CDS: -2.91 Total: -63.63 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -80.87 -2.91 -83.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047629216.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.654 kcal (2) G-P(sol) polarization free energy of solvation -80.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds