Wall clock time and date at job start Wed Apr 1 2020 05:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36014 * 116.99949 * 2 1 4 4 C 1.35846 * 120.31830 * 359.72043 * 3 2 1 5 5 N 1.35441 * 120.77847 * 179.76340 * 4 3 2 6 6 H 0.97002 * 119.29425 * 180.26858 * 5 4 3 7 7 C 1.36420 * 121.41103 * 0.52342 * 5 4 3 8 8 C 1.48073 * 119.72018 * 179.76655 * 7 5 4 9 9 O 1.21513 * 120.00241 * 130.59675 * 8 7 5 10 10 N 1.34780 * 119.99633 * 310.59170 * 8 7 5 11 11 C 1.47853 * 122.22778 * 4.69665 * 10 8 7 12 12 C 1.52720 * 111.05114 * 232.46577 * 11 10 8 13 13 C 1.53863 * 111.52619 * 311.45739 * 12 11 10 14 14 C 1.51082 * 107.34262 * 56.93459 * 13 12 11 15 15 H 1.09000 * 108.73541 * 51.47066 * 14 13 12 16 16 C 1.45716 * 122.22504 * 184.40318 * 10 8 7 17 17 H 1.09007 * 111.07259 * 240.55363 * 16 10 8 18 18 C 1.53318 * 115.80950 * 10.53083 * 16 10 8 19 19 C 1.55469 * 101.35644 * 153.07443 * 18 16 10 20 20 N 1.45028 * 119.19681 * 176.74315 * 14 13 12 21 21 C 1.36938 * 126.55933 * 331.18322 * 20 14 13 22 22 H 1.07999 * 119.99735 * 0.02562 * 21 20 14 23 23 C 1.38815 * 119.99836 * 180.02562 * 21 20 14 24 24 N 1.31619 * 120.00104 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99876 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47224 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47368 * 119.99576 * 25 23 21 28 28 H 1.48496 * 109.47076 * 240.00031 * 25 23 21 29 29 C 1.36178 * 120.56287 * 359.74067 * 7 5 4 30 30 C 1.41578 * 120.31047 * 179.97438 * 3 2 1 31 31 O 1.22257 * 120.65842 * 359.95746 * 30 3 2 32 32 H 1.08993 * 109.47097 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46802 * 300.00294 * 1 2 3 34 34 H 1.09005 * 109.46754 * 60.00268 * 1 2 3 35 35 H 1.08001 * 119.60855 * 359.97438 * 4 3 2 36 36 H 1.08996 * 109.15866 * 352.86527 * 11 10 8 37 37 H 1.08998 * 109.16279 * 112.11042 * 11 10 8 38 38 H 1.08999 * 109.07035 * 71.99265 * 12 11 10 39 39 H 1.09008 * 109.06510 * 191.00375 * 12 11 10 40 40 H 1.08993 * 109.88843 * 176.39370 * 13 12 11 41 41 H 1.09007 * 109.88397 * 297.47681 * 13 12 11 42 42 H 1.09000 * 111.70294 * 34.83399 * 18 16 10 43 43 H 1.09000 * 110.60440 * 270.82967 * 18 16 10 44 44 H 1.08998 * 109.96280 * 217.36725 * 19 18 16 45 45 H 1.08999 * 109.99360 * 96.13899 * 19 18 16 46 46 H 0.96994 * 120.00124 * 180.02562 * 24 23 21 47 47 H 1.07997 * 120.41109 * 180.02562 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3130 2.3553 -0.0057 5 7 1.9181 3.5670 -0.0010 6 1 1.3733 4.3696 -0.0013 7 6 3.2774 3.6829 -0.0010 8 6 3.8996 5.0265 -0.0009 9 8 4.7763 5.2901 0.7981 10 7 3.4935 5.9572 -0.8873 11 6 2.3638 5.7250 -1.8124 12 6 2.7689 6.0141 -3.2563 13 6 3.4844 7.3705 -3.3811 14 6 4.6767 7.3377 -2.4538 15 1 5.2545 6.4363 -2.6581 16 6 4.1347 7.2614 -0.9932 17 1 3.4267 8.0641 -0.7871 18 6 5.4487 7.4240 -0.2201 19 6 6.1640 8.5200 -1.0592 20 7 5.5800 8.4720 -2.4224 21 6 5.8440 9.3332 -3.4538 22 1 5.3563 9.1985 -4.4080 23 6 6.7385 10.3792 -3.2729 24 7 7.3325 10.5435 -2.1099 25 14 7.0981 11.5544 -4.6797 26 1 6.3078 11.1558 -5.8720 27 1 6.7271 12.9352 -4.2783 28 1 8.5457 11.5061 -5.0072 29 6 4.0669 2.5733 -0.0005 30 6 3.4599 1.2937 0.0005 31 8 4.1430 0.2797 0.0018 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8901 35 1 0.2345 2.2974 -0.0107 36 1 2.0432 4.6864 -1.7320 37 1 1.5355 6.3775 -1.5365 38 1 3.4367 5.2258 -3.6035 39 1 1.8758 6.0249 -3.8813 40 1 3.8176 7.5209 -4.4079 41 1 2.8090 8.1744 -3.0882 42 1 6.0273 6.5003 -0.2098 43 1 5.2561 7.7728 0.7945 44 1 7.2335 8.3147 -1.1052 45 1 5.9923 9.5006 -0.6153 46 1 7.9572 11.2746 -1.9834 47 1 5.1428 2.6679 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049595056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:26 Heat of formation + Delta-G solvation = -13.486939 kcal Electronic energy + Delta-G solvation = -31583.759448 eV Core-core repulsion = 27348.494736 eV Total energy + Delta-G solvation = -4235.264712 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.79425 -40.40672 -38.69583 -37.91922 -37.72023 -35.62615 -32.90154 -32.40763 -31.82585 -30.97653 -29.05916 -28.44439 -27.95429 -25.67385 -24.61503 -23.63153 -23.44420 -21.74514 -21.38970 -20.24723 -19.75907 -19.11452 -18.13363 -17.37504 -16.72515 -16.53166 -16.41167 -15.86924 -15.69101 -15.38848 -14.89222 -14.67318 -14.60670 -14.56746 -14.25994 -14.13628 -13.72831 -13.51612 -13.28225 -13.17820 -12.98193 -12.64401 -12.45360 -12.04327 -11.89639 -11.79020 -11.70303 -11.27070 -10.96213 -10.85425 -10.76260 -10.64662 -10.21374 -10.16254 -9.99346 -9.84865 -9.71189 -9.67582 -9.35316 -8.67880 -8.55868 -7.93691 -6.91828 -5.77162 -3.12098 0.63234 0.90518 2.09733 2.44743 2.83715 2.95481 3.35731 3.40924 3.43831 3.46200 3.85261 4.10723 4.36404 4.40058 4.52702 4.64307 4.72494 4.77045 4.81781 4.96969 5.07881 5.15055 5.23838 5.24337 5.33096 5.47756 5.50764 5.59667 5.66876 5.78511 5.86936 5.89316 6.03930 6.13083 6.21574 6.28084 6.38952 6.40594 6.55486 6.59266 6.72847 6.88288 6.97235 7.23245 7.51123 7.56469 7.76098 7.82507 7.87291 8.17009 9.11732 9.75556 10.42180 11.34847 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023650 B = 0.002600 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.626844 B =10765.729453 C =11229.246236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.288 6.288 3 C -0.031 4.031 4 C 0.023 3.977 5 N -0.564 5.564 6 H 0.423 0.577 7 C 0.139 3.861 8 C 0.555 3.445 9 O -0.493 6.493 10 N -0.589 5.589 11 C 0.095 3.905 12 C -0.129 4.129 13 C -0.116 4.116 14 C 0.159 3.841 15 H 0.021 0.979 16 C 0.114 3.886 17 H 0.089 0.911 18 C -0.130 4.130 19 C 0.171 3.829 20 N -0.592 5.592 21 C -0.229 4.229 22 H 0.080 0.920 23 C -0.006 4.006 24 N -0.918 5.918 25 Si 0.911 3.089 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.290 1.290 29 C -0.227 4.227 30 C 0.403 3.597 31 O -0.497 6.497 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.169 0.831 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.041 0.959 45 H 0.059 0.941 46 H 0.253 0.747 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.805 -13.422 3.247 24.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.200 6.200 3 C -0.083 4.083 4 C -0.103 4.103 5 N -0.179 5.179 6 H 0.261 0.739 7 C 0.027 3.973 8 C 0.338 3.662 9 O -0.366 6.366 10 N -0.322 5.322 11 C -0.028 4.028 12 C -0.168 4.168 13 C -0.155 4.155 14 C 0.049 3.951 15 H 0.038 0.962 16 C 0.011 3.989 17 H 0.107 0.893 18 C -0.168 4.168 19 C 0.047 3.953 20 N -0.316 5.316 21 C -0.357 4.357 22 H 0.097 0.903 23 C -0.203 4.203 24 N -0.565 5.565 25 Si 0.741 3.259 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.217 1.217 29 C -0.253 4.253 30 C 0.292 3.708 31 O -0.381 6.381 32 H 0.121 0.879 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.186 0.814 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -18.709 -13.862 3.653 23.570 hybrid contribution -0.528 1.211 -0.800 1.544 sum -19.237 -12.651 2.853 23.201 Atomic orbital electron populations 1.23131 0.79189 1.04515 1.00892 1.86289 1.20308 1.24357 1.89027 1.20433 0.94817 0.84642 1.08362 1.21629 0.98692 0.84205 1.05795 1.40976 1.05009 1.08542 1.63363 0.73857 1.20485 0.82937 0.96087 0.97814 1.17939 0.83734 0.82456 0.82024 1.90905 1.29737 1.78104 1.37886 1.48145 1.33720 1.15401 1.34965 1.22044 0.88558 1.01383 0.90816 1.21878 1.01198 0.99280 0.94405 1.21438 0.97423 0.95254 1.01355 1.20883 0.90564 0.92264 0.91384 0.96213 1.22747 0.94908 0.81374 0.99906 0.89317 1.22940 0.94260 1.01290 0.98335 1.21766 0.95623 0.95199 0.82730 1.44094 1.46996 1.30220 1.10331 1.19017 1.21130 1.04827 0.90710 0.90259 1.24815 0.99297 0.98997 0.97148 1.69942 1.31936 1.32641 1.22012 0.86071 0.77840 0.80833 0.81142 1.20528 1.21750 1.21716 1.22353 1.01957 0.90403 1.10619 1.16773 0.86088 0.89770 0.78126 1.90859 1.65731 1.37549 1.43963 0.87917 0.92769 0.92728 0.81375 0.90384 0.90691 0.91462 0.90595 0.91140 0.91586 0.90206 0.91704 0.94050 0.92321 0.93664 0.81864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.29 -3.16 10.33 -35.61 -0.37 -3.53 16 3 C -0.03 -0.34 6.71 -39.17 -0.26 -0.60 16 4 C 0.02 0.15 10.22 -16.82 -0.17 -0.02 16 5 N -0.56 -3.87 3.81 -9.58 -0.04 -3.91 16 6 H 0.42 1.68 7.29 -40.82 -0.30 1.39 16 7 C 0.14 1.53 5.73 -82.53 -0.47 1.05 16 8 C 0.55 7.52 7.23 -12.22 -0.09 7.43 16 9 O -0.49 -8.50 13.94 5.35 0.07 -8.43 16 10 N -0.59 -7.50 2.91 -164.78 -0.48 -7.97 16 11 C 0.09 0.82 5.44 -3.44 -0.02 0.81 16 12 C -0.13 -1.34 5.93 -26.43 -0.16 -1.50 16 13 C -0.12 -1.74 5.44 -27.25 -0.15 -1.88 16 14 C 0.16 3.00 2.59 -68.09 -0.18 2.82 16 15 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 16 C 0.11 1.89 3.36 -66.60 -0.22 1.66 16 17 H 0.09 1.45 8.14 -51.92 -0.42 1.03 16 18 C -0.13 -2.51 4.87 -25.25 -0.12 -2.63 16 19 C 0.17 4.07 5.46 -1.69 -0.01 4.06 16 20 N -0.59 -14.25 3.34 -162.97 -0.54 -14.79 16 21 C -0.23 -6.03 9.94 -15.06 -0.15 -6.18 16 22 H 0.08 2.00 7.33 -52.49 -0.38 1.62 16 23 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 24 N -0.92 -26.36 10.46 55.49 0.58 -25.78 16 25 Si 0.91 21.47 29.55 -169.99 -5.02 16.44 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 C -0.23 -2.99 9.63 -39.03 -0.38 -3.36 16 30 C 0.40 5.85 6.78 -37.01 -0.25 5.60 16 31 O -0.50 -9.26 17.71 -11.14 -0.20 -9.46 16 32 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.18 7.67 -51.93 -0.40 -0.22 16 34 H 0.05 0.17 7.65 -51.93 -0.40 -0.22 16 35 H 0.17 0.40 6.21 -52.49 -0.33 0.08 16 36 H 0.08 0.51 4.98 -51.93 -0.26 0.25 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 40 H 0.07 1.14 7.73 -51.93 -0.40 0.74 16 41 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 42 H 0.08 1.62 6.40 -51.93 -0.33 1.29 16 43 H 0.06 1.21 8.13 -51.93 -0.42 0.79 16 44 H 0.04 1.10 7.81 -51.93 -0.41 0.69 16 45 H 0.06 1.53 7.18 -51.93 -0.37 1.15 16 46 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.16 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 369.60 15.07 5.57 5.57 Total: -1.00 -35.88 369.60 -8.66 -44.54 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.51 Total: -0.77 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -1.73 Total: 8.08 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.48 Total: -52.45 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.49 Total: -21.41 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.88 -8.66 -44.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049595056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.054 kcal (2) G-P(sol) polarization free energy of solvation -35.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds