Wall clock time and date at job start Wed Apr 1 2020 05:29:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.36014 * 116.99949 * 2 1
4 4 C 1.35846 * 120.31830 * 359.72043 * 3 2 1
5 5 N 1.35441 * 120.77847 * 179.76340 * 4 3 2
6 6 H 0.97002 * 119.29425 * 180.26858 * 5 4 3
7 7 C 1.36420 * 121.41103 * 0.52342 * 5 4 3
8 8 C 1.48073 * 119.72018 * 179.76655 * 7 5 4
9 9 O 1.21513 * 120.00241 * 130.59675 * 8 7 5
10 10 N 1.34780 * 119.99633 * 310.59170 * 8 7 5
11 11 C 1.47853 * 122.22778 * 4.69665 * 10 8 7
12 12 C 1.52720 * 111.05114 * 232.46577 * 11 10 8
13 13 C 1.53863 * 111.52619 * 311.45739 * 12 11 10
14 14 C 1.51082 * 107.34262 * 56.93459 * 13 12 11
15 15 H 1.09000 * 108.73541 * 51.47066 * 14 13 12
16 16 C 1.45716 * 122.22504 * 184.40318 * 10 8 7
17 17 H 1.09007 * 111.07259 * 240.55363 * 16 10 8
18 18 C 1.53318 * 115.80950 * 10.53083 * 16 10 8
19 19 C 1.55469 * 101.35644 * 153.07443 * 18 16 10
20 20 N 1.45028 * 119.19681 * 176.74315 * 14 13 12
21 21 C 1.36938 * 126.55933 * 331.18322 * 20 14 13
22 22 H 1.07999 * 119.99735 * 0.02562 * 21 20 14
23 23 C 1.38815 * 119.99836 * 180.02562 * 21 20 14
24 24 N 1.31619 * 120.00104 * 359.97438 * 23 21 20
25 25 Si 1.86798 * 119.99876 * 180.02562 * 23 21 20
26 26 H 1.48499 * 109.47224 * 359.97438 * 25 23 21
27 27 H 1.48499 * 109.47368 * 119.99576 * 25 23 21
28 28 H 1.48496 * 109.47076 * 240.00031 * 25 23 21
29 29 C 1.36178 * 120.56287 * 359.74067 * 7 5 4
30 30 C 1.41578 * 120.31047 * 179.97438 * 3 2 1
31 31 O 1.22257 * 120.65842 * 359.95746 * 30 3 2
32 32 H 1.08993 * 109.47097 * 179.97438 * 1 2 3
33 33 H 1.09000 * 109.46802 * 300.00294 * 1 2 3
34 34 H 1.09005 * 109.46754 * 60.00268 * 1 2 3
35 35 H 1.08001 * 119.60855 * 359.97438 * 4 3 2
36 36 H 1.08996 * 109.15866 * 352.86527 * 11 10 8
37 37 H 1.08998 * 109.16279 * 112.11042 * 11 10 8
38 38 H 1.08999 * 109.07035 * 71.99265 * 12 11 10
39 39 H 1.09008 * 109.06510 * 191.00375 * 12 11 10
40 40 H 1.08993 * 109.88843 * 176.39370 * 13 12 11
41 41 H 1.09007 * 109.88397 * 297.47681 * 13 12 11
42 42 H 1.09000 * 111.70294 * 34.83399 * 18 16 10
43 43 H 1.09000 * 110.60440 * 270.82967 * 18 16 10
44 44 H 1.08998 * 109.96280 * 217.36725 * 19 18 16
45 45 H 1.08999 * 109.99360 * 96.13899 * 19 18 16
46 46 H 0.96994 * 120.00124 * 180.02562 * 24 23 21
47 47 H 1.07997 * 120.41109 * 180.02562 * 29 7 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0465 1.2119 0.0000
4 6 1.3130 2.3553 -0.0057
5 7 1.9181 3.5670 -0.0010
6 1 1.3733 4.3696 -0.0013
7 6 3.2774 3.6829 -0.0010
8 6 3.8996 5.0265 -0.0009
9 8 4.7763 5.2901 0.7981
10 7 3.4935 5.9572 -0.8873
11 6 2.3638 5.7250 -1.8124
12 6 2.7689 6.0141 -3.2563
13 6 3.4844 7.3705 -3.3811
14 6 4.6767 7.3377 -2.4538
15 1 5.2545 6.4363 -2.6581
16 6 4.1347 7.2614 -0.9932
17 1 3.4267 8.0641 -0.7871
18 6 5.4487 7.4240 -0.2201
19 6 6.1640 8.5200 -1.0592
20 7 5.5800 8.4720 -2.4224
21 6 5.8440 9.3332 -3.4538
22 1 5.3563 9.1985 -4.4080
23 6 6.7385 10.3792 -3.2729
24 7 7.3325 10.5435 -2.1099
25 14 7.0981 11.5544 -4.6797
26 1 6.3078 11.1558 -5.8720
27 1 6.7271 12.9352 -4.2783
28 1 8.5457 11.5061 -5.0072
29 6 4.0669 2.5733 -0.0005
30 6 3.4599 1.2937 0.0005
31 8 4.1430 0.2797 0.0018
32 1 -0.3633 -1.0276 -0.0005
33 1 -0.3633 0.5139 0.8900
34 1 -0.3633 0.5138 -0.8901
35 1 0.2345 2.2974 -0.0107
36 1 2.0432 4.6864 -1.7320
37 1 1.5355 6.3775 -1.5365
38 1 3.4367 5.2258 -3.6035
39 1 1.8758 6.0249 -3.8813
40 1 3.8176 7.5209 -4.4079
41 1 2.8090 8.1744 -3.0882
42 1 6.0273 6.5003 -0.2098
43 1 5.2561 7.7728 0.7945
44 1 7.2335 8.3147 -1.1052
45 1 5.9923 9.5006 -0.6153
46 1 7.9572 11.2746 -1.9834
47 1 5.1428 2.6679 -0.0001
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001049595056.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:29:26
Heat of formation + Delta-G solvation = -13.486939 kcal
Electronic energy + Delta-G solvation = -31583.759448 eV
Core-core repulsion = 27348.494736 eV
Total energy + Delta-G solvation = -4235.264712 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-41.79425 -40.40672 -38.69583 -37.91922 -37.72023 -35.62615 -32.90154 -32.40763
-31.82585 -30.97653 -29.05916 -28.44439 -27.95429 -25.67385 -24.61503 -23.63153
-23.44420 -21.74514 -21.38970 -20.24723 -19.75907 -19.11452 -18.13363 -17.37504
-16.72515 -16.53166 -16.41167 -15.86924 -15.69101 -15.38848 -14.89222 -14.67318
-14.60670 -14.56746 -14.25994 -14.13628 -13.72831 -13.51612 -13.28225 -13.17820
-12.98193 -12.64401 -12.45360 -12.04327 -11.89639 -11.79020 -11.70303 -11.27070
-10.96213 -10.85425 -10.76260 -10.64662 -10.21374 -10.16254 -9.99346 -9.84865
-9.71189 -9.67582 -9.35316 -8.67880 -8.55868 -7.93691 -6.91828 -5.77162
-3.12098 0.63234 0.90518 2.09733 2.44743 2.83715 2.95481 3.35731
3.40924 3.43831 3.46200 3.85261 4.10723 4.36404 4.40058 4.52702
4.64307 4.72494 4.77045 4.81781 4.96969 5.07881 5.15055 5.23838
5.24337 5.33096 5.47756 5.50764 5.59667 5.66876 5.78511 5.86936
5.89316 6.03930 6.13083 6.21574 6.28084 6.38952 6.40594 6.55486
6.59266 6.72847 6.88288 6.97235 7.23245 7.51123 7.56469 7.76098
7.82507 7.87291 8.17009 9.11732 9.75556 10.42180 11.34847
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.023650 B = 0.002600 C = 0.002493
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1183.626844 B =10765.729453 C =11229.246236
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 O -0.288 6.288
3 C -0.031 4.031
4 C 0.023 3.977
5 N -0.564 5.564
6 H 0.423 0.577
7 C 0.139 3.861
8 C 0.555 3.445
9 O -0.493 6.493
10 N -0.589 5.589
11 C 0.095 3.905
12 C -0.129 4.129
13 C -0.116 4.116
14 C 0.159 3.841
15 H 0.021 0.979
16 C 0.114 3.886
17 H 0.089 0.911
18 C -0.130 4.130
19 C 0.171 3.829
20 N -0.592 5.592
21 C -0.229 4.229
22 H 0.080 0.920
23 C -0.006 4.006
24 N -0.918 5.918
25 Si 0.911 3.089
26 H -0.280 1.280
27 H -0.290 1.290
28 H -0.290 1.290
29 C -0.227 4.227
30 C 0.403 3.597
31 O -0.497 6.497
32 H 0.102 0.898
33 H 0.054 0.946
34 H 0.054 0.946
35 H 0.169 0.831
36 H 0.078 0.922
37 H 0.075 0.925
38 H 0.067 0.933
39 H 0.075 0.925
40 H 0.070 0.930
41 H 0.065 0.935
42 H 0.079 0.921
43 H 0.064 0.936
44 H 0.041 0.959
45 H 0.059 0.941
46 H 0.253 0.747
47 H 0.164 0.836
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.805 -13.422 3.247 24.144
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 O -0.200 6.200
3 C -0.083 4.083
4 C -0.103 4.103
5 N -0.179 5.179
6 H 0.261 0.739
7 C 0.027 3.973
8 C 0.338 3.662
9 O -0.366 6.366
10 N -0.322 5.322
11 C -0.028 4.028
12 C -0.168 4.168
13 C -0.155 4.155
14 C 0.049 3.951
15 H 0.038 0.962
16 C 0.011 3.989
17 H 0.107 0.893
18 C -0.168 4.168
19 C 0.047 3.953
20 N -0.316 5.316
21 C -0.357 4.357
22 H 0.097 0.903
23 C -0.203 4.203
24 N -0.565 5.565
25 Si 0.741 3.259
26 H -0.205 1.205
27 H -0.218 1.218
28 H -0.217 1.217
29 C -0.253 4.253
30 C 0.292 3.708
31 O -0.381 6.381
32 H 0.121 0.879
33 H 0.072 0.928
34 H 0.073 0.927
35 H 0.186 0.814
36 H 0.096 0.904
37 H 0.093 0.907
38 H 0.085 0.915
39 H 0.094 0.906
40 H 0.089 0.911
41 H 0.084 0.916
42 H 0.098 0.902
43 H 0.083 0.917
44 H 0.060 0.940
45 H 0.077 0.923
46 H 0.063 0.937
47 H 0.181 0.819
Dipole moment (debyes) X Y Z Total
from point charges -18.709 -13.862 3.653 23.570
hybrid contribution -0.528 1.211 -0.800 1.544
sum -19.237 -12.651 2.853 23.201
Atomic orbital electron populations
1.23131 0.79189 1.04515 1.00892 1.86289 1.20308 1.24357 1.89027
1.20433 0.94817 0.84642 1.08362 1.21629 0.98692 0.84205 1.05795
1.40976 1.05009 1.08542 1.63363 0.73857 1.20485 0.82937 0.96087
0.97814 1.17939 0.83734 0.82456 0.82024 1.90905 1.29737 1.78104
1.37886 1.48145 1.33720 1.15401 1.34965 1.22044 0.88558 1.01383
0.90816 1.21878 1.01198 0.99280 0.94405 1.21438 0.97423 0.95254
1.01355 1.20883 0.90564 0.92264 0.91384 0.96213 1.22747 0.94908
0.81374 0.99906 0.89317 1.22940 0.94260 1.01290 0.98335 1.21766
0.95623 0.95199 0.82730 1.44094 1.46996 1.30220 1.10331 1.19017
1.21130 1.04827 0.90710 0.90259 1.24815 0.99297 0.98997 0.97148
1.69942 1.31936 1.32641 1.22012 0.86071 0.77840 0.80833 0.81142
1.20528 1.21750 1.21716 1.22353 1.01957 0.90403 1.10619 1.16773
0.86088 0.89770 0.78126 1.90859 1.65731 1.37549 1.43963 0.87917
0.92769 0.92728 0.81375 0.90384 0.90691 0.91462 0.90595 0.91140
0.91586 0.90206 0.91704 0.94050 0.92321 0.93664 0.81864
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.09 9.81 101.05 0.99 1.08 16
2 O -0.29 -3.16 10.33 -35.61 -0.37 -3.53 16
3 C -0.03 -0.34 6.71 -39.17 -0.26 -0.60 16
4 C 0.02 0.15 10.22 -16.82 -0.17 -0.02 16
5 N -0.56 -3.87 3.81 -9.58 -0.04 -3.91 16
6 H 0.42 1.68 7.29 -40.82 -0.30 1.39 16
7 C 0.14 1.53 5.73 -82.53 -0.47 1.05 16
8 C 0.55 7.52 7.23 -12.22 -0.09 7.43 16
9 O -0.49 -8.50 13.94 5.35 0.07 -8.43 16
10 N -0.59 -7.50 2.91 -164.78 -0.48 -7.97 16
11 C 0.09 0.82 5.44 -3.44 -0.02 0.81 16
12 C -0.13 -1.34 5.93 -26.43 -0.16 -1.50 16
13 C -0.12 -1.74 5.44 -27.25 -0.15 -1.88 16
14 C 0.16 3.00 2.59 -68.09 -0.18 2.82 16
15 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16
16 C 0.11 1.89 3.36 -66.60 -0.22 1.66 16
17 H 0.09 1.45 8.14 -51.92 -0.42 1.03 16
18 C -0.13 -2.51 4.87 -25.25 -0.12 -2.63 16
19 C 0.17 4.07 5.46 -1.69 -0.01 4.06 16
20 N -0.59 -14.25 3.34 -162.97 -0.54 -14.79 16
21 C -0.23 -6.03 9.94 -15.06 -0.15 -6.18 16
22 H 0.08 2.00 7.33 -52.49 -0.38 1.62 16
23 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16
24 N -0.92 -26.36 10.46 55.49 0.58 -25.78 16
25 Si 0.91 21.47 29.55 -169.99 -5.02 16.44 16
26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
27 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16
28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
29 C -0.23 -2.99 9.63 -39.03 -0.38 -3.36 16
30 C 0.40 5.85 6.78 -37.01 -0.25 5.60 16
31 O -0.50 -9.26 17.71 -11.14 -0.20 -9.46 16
32 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16
33 H 0.05 0.18 7.67 -51.93 -0.40 -0.22 16
34 H 0.05 0.17 7.65 -51.93 -0.40 -0.22 16
35 H 0.17 0.40 6.21 -52.49 -0.33 0.08 16
36 H 0.08 0.51 4.98 -51.93 -0.26 0.25 16
37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16
39 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16
40 H 0.07 1.14 7.73 -51.93 -0.40 0.74 16
41 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16
42 H 0.08 1.62 6.40 -51.93 -0.33 1.29 16
43 H 0.06 1.21 8.13 -51.93 -0.42 0.79 16
44 H 0.04 1.10 7.81 -51.93 -0.41 0.69 16
45 H 0.06 1.53 7.18 -51.93 -0.37 1.15 16
46 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16
47 H 0.16 2.27 8.06 -52.49 -0.42 1.85 16
LS Contribution 369.60 15.07 5.57 5.57
Total: -1.00 -35.88 369.60 -8.66 -44.54
By element:
Atomic # 1 Polarization: 5.73 SS G_CDS: -6.51 Total: -0.77 kcal
Atomic # 6 Polarization: 9.82 SS G_CDS: -1.73 Total: 8.08 kcal
Atomic # 7 Polarization: -51.97 SS G_CDS: -0.48 Total: -52.45 kcal
Atomic # 8 Polarization: -20.92 SS G_CDS: -0.49 Total: -21.41 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal
Total LS contribution 5.57 Total: 5.57 kcal
Total: -35.88 -8.66 -44.54 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049595056.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.054 kcal
(2) G-P(sol) polarization free energy of solvation -35.877 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.823 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.541 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.487 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds