Wall clock time and date at job start Wed Apr 1 2020 05:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36014 * 116.99949 * 2 1 4 4 C 1.35846 * 120.31830 * 359.72043 * 3 2 1 5 5 N 1.35441 * 120.77847 * 179.76340 * 4 3 2 6 6 H 0.97002 * 119.29425 * 180.26858 * 5 4 3 7 7 C 1.36420 * 121.41103 * 0.52342 * 5 4 3 8 8 C 1.48073 * 119.72018 * 179.76655 * 7 5 4 9 9 O 1.21513 * 120.00241 * 130.59675 * 8 7 5 10 10 N 1.34780 * 119.99633 * 310.59170 * 8 7 5 11 11 C 1.47853 * 122.22778 * 4.69665 * 10 8 7 12 12 C 1.52720 * 111.05114 * 232.46577 * 11 10 8 13 13 C 1.53863 * 111.52619 * 311.45739 * 12 11 10 14 14 C 1.51082 * 107.34262 * 56.93459 * 13 12 11 15 15 H 1.09000 * 108.73541 * 51.47066 * 14 13 12 16 16 C 1.45716 * 122.22504 * 184.40318 * 10 8 7 17 17 H 1.09007 * 111.07259 * 240.55363 * 16 10 8 18 18 C 1.53318 * 115.80950 * 10.53083 * 16 10 8 19 19 C 1.55469 * 101.35644 * 153.07443 * 18 16 10 20 20 N 1.45028 * 119.19681 * 176.74315 * 14 13 12 21 21 C 1.36938 * 126.55933 * 331.18322 * 20 14 13 22 22 H 1.07999 * 119.99735 * 0.02562 * 21 20 14 23 23 C 1.38815 * 119.99836 * 180.02562 * 21 20 14 24 24 N 1.31619 * 120.00104 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99876 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47224 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47368 * 119.99576 * 25 23 21 28 28 H 1.48496 * 109.47076 * 240.00031 * 25 23 21 29 29 C 1.36178 * 120.56287 * 359.74067 * 7 5 4 30 30 C 1.41578 * 120.31047 * 179.97438 * 3 2 1 31 31 O 1.22257 * 120.65842 * 359.95746 * 30 3 2 32 32 H 1.08993 * 109.47097 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46802 * 300.00294 * 1 2 3 34 34 H 1.09005 * 109.46754 * 60.00268 * 1 2 3 35 35 H 1.08001 * 119.60855 * 359.97438 * 4 3 2 36 36 H 1.08996 * 109.15866 * 352.86527 * 11 10 8 37 37 H 1.08998 * 109.16279 * 112.11042 * 11 10 8 38 38 H 1.08999 * 109.07035 * 71.99265 * 12 11 10 39 39 H 1.09008 * 109.06510 * 191.00375 * 12 11 10 40 40 H 1.08993 * 109.88843 * 176.39370 * 13 12 11 41 41 H 1.09007 * 109.88397 * 297.47681 * 13 12 11 42 42 H 1.09000 * 111.70294 * 34.83399 * 18 16 10 43 43 H 1.09000 * 110.60440 * 270.82967 * 18 16 10 44 44 H 1.08998 * 109.96280 * 217.36725 * 19 18 16 45 45 H 1.08999 * 109.99360 * 96.13899 * 19 18 16 46 46 H 0.96994 * 120.00124 * 180.02562 * 24 23 21 47 47 H 1.07997 * 120.41109 * 180.02562 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3130 2.3553 -0.0057 5 7 1.9181 3.5670 -0.0010 6 1 1.3733 4.3696 -0.0013 7 6 3.2774 3.6829 -0.0010 8 6 3.8996 5.0265 -0.0009 9 8 4.7763 5.2901 0.7981 10 7 3.4935 5.9572 -0.8873 11 6 2.3638 5.7250 -1.8124 12 6 2.7689 6.0141 -3.2563 13 6 3.4844 7.3705 -3.3811 14 6 4.6767 7.3377 -2.4538 15 1 5.2545 6.4363 -2.6581 16 6 4.1347 7.2614 -0.9932 17 1 3.4267 8.0641 -0.7871 18 6 5.4487 7.4240 -0.2201 19 6 6.1640 8.5200 -1.0592 20 7 5.5800 8.4720 -2.4224 21 6 5.8440 9.3332 -3.4538 22 1 5.3563 9.1985 -4.4080 23 6 6.7385 10.3792 -3.2729 24 7 7.3325 10.5435 -2.1099 25 14 7.0981 11.5544 -4.6797 26 1 6.3078 11.1558 -5.8720 27 1 6.7271 12.9352 -4.2783 28 1 8.5457 11.5061 -5.0072 29 6 4.0669 2.5733 -0.0005 30 6 3.4599 1.2937 0.0005 31 8 4.1430 0.2797 0.0018 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8901 35 1 0.2345 2.2974 -0.0107 36 1 2.0432 4.6864 -1.7320 37 1 1.5355 6.3775 -1.5365 38 1 3.4367 5.2258 -3.6035 39 1 1.8758 6.0249 -3.8813 40 1 3.8176 7.5209 -4.4079 41 1 2.8090 8.1744 -3.0882 42 1 6.0273 6.5003 -0.2098 43 1 5.2561 7.7728 0.7945 44 1 7.2335 8.3147 -1.1052 45 1 5.9923 9.5006 -0.6153 46 1 7.9572 11.2746 -1.9834 47 1 5.1428 2.6679 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049595056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:25 Heat of formation + Delta-G solvation = -39.385647 kcal Electronic energy + Delta-G solvation = -31584.882500 eV Core-core repulsion = 27348.494736 eV Total energy + Delta-G solvation = -4236.387764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.73776 -41.50579 -39.72207 -38.91911 -38.77644 -37.02295 -34.30677 -34.00288 -32.82957 -31.95326 -30.72372 -29.74864 -28.41083 -26.88018 -26.36326 -24.74154 -24.25140 -22.92459 -22.73229 -21.63753 -21.08605 -19.98767 -19.07196 -18.59082 -18.11891 -17.38347 -17.36332 -17.14324 -16.75487 -16.53885 -16.32806 -15.80813 -15.60597 -15.54522 -15.41578 -15.23153 -14.97562 -14.82203 -14.35284 -14.24468 -14.18693 -13.92131 -13.81190 -13.46241 -13.15831 -12.91043 -12.76618 -12.38340 -12.35541 -12.25283 -12.08729 -11.96607 -11.80883 -11.74730 -11.60516 -11.50809 -11.04673 -10.75868 -10.62265 -10.45787 -9.74967 -8.91836 -8.77423 -7.84647 -5.21207 -0.36235 0.14534 1.16679 1.35360 1.46407 1.48125 1.57470 1.93266 2.33716 2.49837 2.52571 2.93120 3.34474 3.38020 3.54809 3.67900 3.80283 3.85426 3.89443 4.00120 4.01619 4.17164 4.31502 4.36692 4.42541 4.51092 4.52008 4.53802 4.57263 4.60010 4.68547 4.85446 4.87093 4.96912 5.01045 5.06784 5.14261 5.29491 5.34227 5.43816 5.49465 5.54435 5.59520 5.71725 5.82451 6.15682 6.18001 6.30545 6.75580 6.92206 7.05471 7.75676 8.44381 9.27178 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023650 B = 0.002600 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.626844 B =10765.729453 C =11229.246236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.325 6.325 3 C -0.059 4.059 4 C 0.075 3.925 5 N -0.532 5.532 6 H 0.447 0.553 7 C 0.163 3.837 8 C 0.556 3.444 9 O -0.536 6.536 10 N -0.584 5.584 11 C 0.087 3.913 12 C -0.122 4.122 13 C -0.112 4.112 14 C 0.149 3.851 15 H -0.003 1.003 16 C 0.135 3.865 17 H 0.105 0.895 18 C -0.115 4.115 19 C 0.180 3.820 20 N -0.611 5.611 21 C -0.229 4.229 22 H 0.090 0.910 23 C -0.070 4.070 24 N -0.954 5.954 25 Si 0.976 3.024 26 H -0.261 1.261 27 H -0.292 1.292 28 H -0.300 1.300 29 C -0.249 4.249 30 C 0.381 3.619 31 O -0.571 6.571 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.055 0.945 39 H 0.118 0.882 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.072 0.928 44 H -0.004 1.004 45 H 0.030 0.970 46 H 0.246 0.754 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.864 -13.357 2.201 29.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.238 6.238 3 C -0.109 4.109 4 C -0.053 4.053 5 N -0.147 5.147 6 H 0.290 0.710 7 C 0.048 3.952 8 C 0.341 3.659 9 O -0.412 6.412 10 N -0.316 5.316 11 C -0.033 4.033 12 C -0.160 4.160 13 C -0.150 4.150 14 C 0.041 3.959 15 H 0.014 0.986 16 C 0.030 3.970 17 H 0.123 0.877 18 C -0.154 4.154 19 C 0.055 3.945 20 N -0.336 5.336 21 C -0.358 4.358 22 H 0.108 0.892 23 C -0.262 4.262 24 N -0.604 5.604 25 Si 0.805 3.195 26 H -0.185 1.185 27 H -0.219 1.219 28 H -0.227 1.227 29 C -0.276 4.276 30 C 0.277 3.723 31 O -0.462 6.462 32 H 0.127 0.873 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.248 0.752 36 H 0.126 0.874 37 H 0.137 0.863 38 H 0.073 0.927 39 H 0.137 0.863 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.014 0.986 45 H 0.049 0.951 46 H 0.055 0.945 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -24.885 -13.781 2.569 28.562 hybrid contribution 1.273 1.217 -0.493 1.829 sum -23.612 -12.565 2.076 26.827 Atomic orbital electron populations 1.23527 0.76132 1.06035 1.03211 1.86246 1.23506 1.24601 1.89493 1.20080 0.93334 0.86494 1.10982 1.22329 1.00665 0.81976 1.00315 1.41125 1.03451 1.10166 1.59938 0.70994 1.19847 0.84545 0.93559 0.97265 1.18179 0.83099 0.83063 0.81546 1.90898 1.31561 1.78911 1.39854 1.48142 1.34350 1.13627 1.35471 1.22500 0.87725 1.04357 0.88707 1.21873 1.02135 0.95602 0.96405 1.21417 0.95819 0.98698 0.99066 1.21104 0.91161 0.89126 0.94557 0.98599 1.22313 0.93945 0.83877 0.96847 0.87722 1.22667 0.95680 0.98786 0.98218 1.21465 0.93824 0.95286 0.83933 1.44340 1.48329 1.31093 1.09821 1.19430 1.20207 1.04473 0.91651 0.89197 1.25667 0.99890 1.01176 0.99490 1.70167 1.32920 1.33192 1.24076 0.85038 0.77030 0.78476 0.78972 1.18477 1.21886 1.22721 1.22124 1.01435 0.91244 1.12777 1.17250 0.88245 0.89098 0.77726 1.90811 1.67405 1.39198 1.48793 0.87301 0.90386 0.90024 0.75170 0.87446 0.86255 0.92662 0.86334 0.92760 0.90652 0.91633 0.90954 0.98608 0.95147 0.94516 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 9.81 113.37 1.11 1.14 16 2 O -0.33 -6.52 10.33 -78.58 -0.81 -7.33 16 3 C -0.06 -1.15 6.71 22.54 0.15 -1.00 16 4 C 0.08 0.53 10.22 83.58 0.85 1.38 16 5 N -0.53 -4.13 3.81 -184.22 -0.70 -4.84 16 6 H 0.45 -0.11 7.29 -92.71 -0.68 -0.78 16 7 C 0.16 3.16 5.73 40.56 0.23 3.39 16 8 C 0.56 14.05 7.23 86.85 0.63 14.68 16 9 O -0.54 -18.60 13.94 -3.76 -0.05 -18.65 16 10 N -0.58 -12.95 2.91 -793.54 -2.31 -15.26 16 11 C 0.09 0.97 5.44 86.03 0.47 1.44 16 12 C -0.12 -1.91 5.93 30.79 0.18 -1.73 16 13 C -0.11 -3.02 5.44 30.26 0.16 -2.85 16 14 C 0.15 5.55 2.59 45.67 0.12 5.67 16 15 H 0.00 -0.14 8.06 -2.39 -0.02 -0.16 16 16 C 0.13 4.24 3.36 46.28 0.16 4.40 16 17 H 0.11 3.08 8.14 -2.38 -0.02 3.06 16 18 C -0.11 -4.59 4.87 31.55 0.15 -4.44 16 19 C 0.18 9.10 5.46 86.87 0.47 9.58 16 20 N -0.61 -30.25 3.34 -669.53 -2.24 -32.49 16 21 C -0.23 -12.25 9.94 84.03 0.84 -11.41 16 22 H 0.09 4.51 7.33 -2.91 -0.02 4.49 16 23 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 24 N -0.95 -57.56 10.46 21.65 0.23 -57.33 16 25 Si 0.98 44.96 29.55 68.60 2.03 46.99 16 26 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 28 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 29 C -0.25 -6.74 9.63 22.63 0.22 -6.53 16 30 C 0.38 11.45 6.78 23.93 0.16 11.62 16 31 O -0.57 -23.27 17.71 8.97 0.16 -23.11 16 32 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.06 7.67 -2.39 -0.02 0.04 16 34 H 0.08 0.01 7.65 -2.38 -0.02 -0.01 16 35 H 0.23 -1.08 6.21 -2.91 -0.02 -1.09 16 36 H 0.11 0.59 4.98 -2.39 -0.01 0.58 16 37 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.05 1.64 7.73 -2.39 -0.02 1.62 16 41 H 0.07 1.92 8.12 -2.38 -0.02 1.90 16 42 H 0.07 2.82 6.40 -2.39 -0.02 2.80 16 43 H 0.07 2.76 8.13 -2.39 -0.02 2.74 16 44 H 0.00 -0.26 7.81 -2.39 -0.02 -0.27 16 45 H 0.03 1.68 7.18 -2.39 -0.02 1.67 16 46 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 47 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -92.11 369.60 3.02 -89.09 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: 0.34 Total: 1.03 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: 6.38 Total: 21.90 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -5.02 Total: -109.92 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -0.71 Total: -49.09 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -92.11 3.02 -89.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049595056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.709 kcal (2) G-P(sol) polarization free energy of solvation -92.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds