Wall clock time and date at job start Wed Apr 1 2020 05:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35532 * 116.99643 * 2 1 4 4 C 1.38814 * 120.89446 * 0.02562 * 3 2 1 5 5 C 1.38714 * 119.19506 * 179.97438 * 4 3 2 6 6 O 1.35525 * 119.46842 * 179.97438 * 5 4 3 7 7 N 1.32590 * 121.05594 * 359.97438 * 5 4 3 8 8 C 1.31604 * 121.97845 * 359.70072 * 7 5 4 9 9 C 1.39545 * 120.66759 * 0.58912 * 8 7 5 10 10 C 1.47347 * 120.55505 * 179.69660 * 9 8 7 11 11 O 1.21610 * 119.99885 * 232.72831 * 10 9 8 12 12 N 1.34776 * 120.00021 * 52.73386 * 10 9 8 13 13 C 1.47855 * 122.22331 * 355.22701 * 12 10 9 14 14 C 1.52711 * 111.06177 * 127.53532 * 13 12 10 15 15 C 1.53873 * 111.52479 * 48.52746 * 14 13 12 16 16 C 1.51081 * 107.34623 * 303.07795 * 15 14 13 17 17 H 1.09002 * 108.73188 * 309.14983 * 16 15 14 18 18 C 1.45715 * 122.22991 * 175.24199 * 12 10 9 19 19 H 1.09001 * 111.64130 * 119.12821 * 18 12 10 20 20 C 1.53441 * 116.37250 * 350.08484 * 18 12 10 21 21 C 1.55466 * 101.67025 * 207.26469 * 20 18 12 22 22 N 1.45023 * 119.19681 * 183.88619 * 16 15 14 23 23 C 1.36936 * 126.55937 * 28.75211 * 22 16 15 24 24 H 1.08003 * 120.00491 * 359.97438 * 23 22 16 25 25 C 1.38814 * 119.99825 * 180.02562 * 23 22 16 26 26 N 1.31622 * 119.99859 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00152 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47289 * 359.97438 * 27 25 23 29 29 H 1.48498 * 109.47179 * 120.00158 * 27 25 23 30 30 H 1.48501 * 109.47492 * 240.00012 * 27 25 23 31 31 H 1.08991 * 109.47297 * 60.00145 * 1 2 3 32 32 H 1.09004 * 109.46781 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47022 * 299.99879 * 1 2 3 34 34 H 1.07994 * 120.40269 * 359.95536 * 4 3 2 35 35 H 0.96697 * 114.00095 * 90.00262 * 6 5 4 36 36 H 1.08002 * 119.66876 * 180.29112 * 8 7 5 37 37 H 1.09006 * 109.15389 * 247.93662 * 13 12 10 38 38 H 1.08998 * 109.16191 * 7.17209 * 13 12 10 39 39 H 1.09006 * 109.07071 * 288.00848 * 14 13 12 40 40 H 1.08996 * 109.07471 * 169.05650 * 14 13 12 41 41 H 1.08998 * 109.88488 * 183.61241 * 15 14 13 42 42 H 1.09003 * 109.87585 * 62.53450 * 15 14 13 43 43 H 1.08995 * 110.98700 * 89.16826 * 20 18 12 44 44 H 1.08991 * 110.98337 * 325.35992 * 20 18 12 45 45 H 1.08996 * 109.96567 * 263.22031 * 21 20 18 46 46 H 1.08996 * 109.99301 * 141.99511 * 21 20 18 47 47 H 0.97000 * 120.00140 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 1.3064 2.3834 0.0005 5 6 1.9724 3.6002 0.0011 6 8 1.2576 4.7516 0.0010 7 7 3.2972 3.6548 0.0016 8 6 4.0396 2.5681 0.0074 9 6 3.4500 1.3034 0.0011 10 6 4.2836 0.0884 0.0009 11 8 4.1053 -0.7713 -0.8406 12 7 5.2436 -0.0703 0.9334 13 6 5.5722 0.9860 1.9144 14 6 5.5389 0.4404 3.3403 15 6 6.3321 -0.8726 3.4610 16 6 5.7442 -1.8470 2.4673 17 1 4.6637 -1.8802 2.6069 18 6 6.0271 -1.2941 1.0418 19 1 7.0902 -1.1055 0.8922 20 6 5.5521 -2.4845 0.1980 21 6 6.0702 -3.6888 1.0335 22 7 6.2496 -3.2057 2.4249 23 6 6.7894 -3.9081 3.4692 24 1 6.8703 -3.4498 4.4438 25 6 7.2336 -5.2088 3.2748 26 7 7.1354 -5.7671 2.0869 27 14 7.9705 -6.1667 4.6991 28 1 7.9680 -5.3201 5.9191 29 1 7.1643 -7.3897 4.9429 30 1 9.3659 -6.5518 4.3673 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.2269 2.3513 0.0002 35 1 1.0498 5.0856 0.8844 36 1 5.1160 2.6561 0.0124 37 1 6.5689 1.3732 1.7027 38 1 4.8476 1.7954 1.8248 39 1 4.5033 0.2584 3.6280 40 1 5.9699 1.1800 4.0149 41 1 6.2379 -1.2712 4.4711 42 1 7.3820 -0.6941 3.2284 43 1 6.0102 -2.4695 -0.7909 44 1 4.4649 -2.5004 0.1228 45 1 7.0233 -4.0360 0.6345 46 1 5.3409 -4.4986 1.0119 47 1 7.4455 -6.6761 1.9511 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049741546.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:21 Heat of formation + Delta-G solvation = -51.630961 kcal Electronic energy + Delta-G solvation = -31986.589721 eV Core-core repulsion = 27749.670960 eV Total energy + Delta-G solvation = -4236.918761 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.34156 -41.29423 -39.82280 -39.17203 -37.83145 -36.90592 -34.30836 -33.89485 -32.77062 -31.97310 -30.59141 -29.69458 -28.57144 -26.62060 -26.29927 -24.70738 -24.19805 -22.85161 -22.54569 -21.53637 -20.60354 -20.25743 -18.86310 -18.48403 -18.16687 -17.77658 -17.20591 -17.08334 -16.66778 -16.34748 -16.23542 -15.79156 -15.71652 -15.65170 -15.37823 -15.14746 -14.94820 -14.36891 -14.15783 -14.04104 -13.93590 -13.64051 -13.36578 -13.14277 -12.96897 -12.87470 -12.74795 -12.58997 -12.52944 -12.25332 -12.06426 -11.94410 -11.78203 -11.70122 -11.57943 -11.45540 -10.94892 -10.74286 -10.42285 -10.23232 -9.98463 -9.56415 -8.90921 -7.83339 -5.20452 -0.43776 0.06888 1.46518 1.47930 1.55947 1.58429 1.87429 1.99500 2.41793 2.51009 2.59386 3.25694 3.35426 3.43009 3.49669 3.68786 3.86667 3.94902 3.98664 4.07239 4.10370 4.14870 4.25176 4.28361 4.33639 4.37689 4.41794 4.56118 4.58618 4.63114 4.66000 4.67432 4.76966 4.92788 5.02427 5.10977 5.14521 5.19299 5.29003 5.42798 5.49551 5.58901 5.61311 5.72680 6.03020 6.18265 6.44166 6.53734 6.77054 7.05827 7.13564 7.75955 8.46227 9.28746 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019334 B = 0.002969 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.857480 B = 9429.315110 C = 9955.172820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.322 6.322 3 C 0.217 3.783 4 C -0.273 4.273 5 C 0.367 3.633 6 O -0.483 6.483 7 N -0.538 5.538 8 C 0.202 3.798 9 C -0.241 4.241 10 C 0.572 3.428 11 O -0.561 6.561 12 N -0.592 5.592 13 C 0.099 3.901 14 C -0.119 4.119 15 C -0.110 4.110 16 C 0.154 3.846 17 H -0.006 1.006 18 C 0.133 3.867 19 H 0.089 0.911 20 C -0.111 4.111 21 C 0.184 3.816 22 N -0.611 5.611 23 C -0.231 4.231 24 H 0.091 0.909 25 C -0.070 4.070 26 N -0.955 5.955 27 Si 0.979 3.021 28 H -0.260 1.260 29 H -0.297 1.297 30 H -0.292 1.292 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.178 0.822 35 H 0.429 0.571 36 H 0.196 0.804 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.055 0.945 40 H 0.114 0.886 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.028 0.972 46 H -0.003 1.003 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.192 23.979 0.116 26.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.231 6.231 3 C 0.161 3.839 4 C -0.295 4.295 5 C 0.190 3.810 6 O -0.295 6.295 7 N -0.261 5.261 8 C 0.044 3.956 9 C -0.248 4.248 10 C 0.360 3.640 11 O -0.440 6.440 12 N -0.324 5.324 13 C -0.022 4.022 14 C -0.157 4.157 15 C -0.149 4.149 16 C 0.046 3.954 17 H 0.011 0.989 18 C 0.027 3.973 19 H 0.107 0.893 20 C -0.150 4.150 21 C 0.059 3.941 22 N -0.336 5.336 23 C -0.359 4.359 24 H 0.108 0.892 25 C -0.263 4.263 26 N -0.605 5.605 27 Si 0.808 3.192 28 H -0.184 1.184 29 H -0.224 1.224 30 H -0.219 1.219 31 H 0.096 0.904 32 H 0.130 0.870 33 H 0.101 0.899 34 H 0.195 0.805 35 H 0.292 0.708 36 H 0.212 0.788 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.074 0.926 40 H 0.132 0.868 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.046 0.954 46 H 0.016 0.984 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.842 23.910 -0.852 26.696 hybrid contribution -0.392 -2.181 0.765 2.345 sum -12.234 21.729 -0.087 24.936 Atomic orbital electron populations 1.23557 0.75050 1.06075 1.03478 1.86222 1.24725 1.26136 1.86067 1.19277 0.90692 0.85529 0.88389 1.22220 1.03347 0.90336 1.13608 1.19102 0.86450 0.85653 0.89798 1.84673 1.70735 1.37748 1.36324 1.67315 1.07156 1.32762 1.18823 1.22901 1.00855 0.83437 0.88390 1.20361 0.91808 0.95842 1.16740 1.18045 0.79417 0.85869 0.80675 1.90796 1.69820 1.44338 1.39023 1.47967 1.35364 1.16935 1.32096 1.22261 1.03514 0.89080 0.87327 1.21867 1.00496 0.96684 0.96685 1.21403 1.00103 0.94708 0.98647 1.20915 0.94679 0.85136 0.94657 0.98862 1.22038 0.94642 0.83735 0.96846 0.89325 1.22639 1.00709 0.94084 0.97549 1.21423 0.97040 0.92240 0.83414 1.44348 1.71769 1.10497 1.06954 1.19461 1.31629 0.95028 0.89800 0.89172 1.25707 1.02719 0.98410 0.99462 1.70191 1.53588 1.14043 1.22629 0.84990 0.77116 0.78229 0.78886 1.18435 1.22430 1.21938 0.90417 0.86978 0.89850 0.80458 0.70774 0.78780 0.88114 0.87865 0.92574 0.86762 0.92452 0.91135 0.91604 0.91878 0.95365 0.98424 0.94502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.84 113.37 1.12 1.29 16 2 O -0.32 -8.45 9.80 -86.92 -0.85 -9.30 16 3 C 0.22 5.11 6.72 23.06 0.16 5.27 16 4 C -0.27 -4.51 9.02 22.52 0.20 -4.30 16 5 C 0.37 6.17 7.73 84.69 0.65 6.83 16 6 O -0.48 -5.81 13.54 -88.28 -1.20 -7.00 16 7 N -0.54 -10.42 10.36 -307.95 -3.19 -13.61 16 8 C 0.20 3.92 8.63 85.04 0.73 4.66 16 9 C -0.24 -6.11 5.02 -19.91 -0.10 -6.21 16 10 C 0.57 18.83 6.87 86.64 0.60 19.42 16 11 O -0.56 -23.44 13.76 -2.62 -0.04 -23.47 16 12 N -0.59 -17.91 2.91 -795.09 -2.31 -20.22 16 13 C 0.10 1.97 5.49 86.02 0.47 2.45 16 14 C -0.12 -2.56 5.92 30.79 0.18 -2.38 16 15 C -0.11 -3.52 5.45 30.26 0.16 -3.35 16 16 C 0.15 6.48 2.58 45.50 0.12 6.60 16 17 H -0.01 -0.28 8.04 -2.39 -0.02 -0.30 16 18 C 0.13 5.06 3.32 46.14 0.15 5.21 16 19 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 20 C -0.11 -5.04 4.94 31.59 0.16 -4.89 16 21 C 0.18 9.98 5.47 86.86 0.48 10.46 16 22 N -0.61 -32.41 3.35 -670.53 -2.25 -34.66 16 23 C -0.23 -12.92 9.94 84.03 0.84 -12.09 16 24 H 0.09 4.73 7.31 -2.91 -0.02 4.71 16 25 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 26 N -0.96 -59.38 10.46 21.65 0.23 -59.15 16 27 Si 0.98 46.19 29.55 68.60 2.03 48.22 16 28 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 29 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 30 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 31 H 0.08 0.85 7.71 -2.39 -0.02 0.83 16 32 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 0.79 7.71 -2.39 -0.02 0.77 16 34 H 0.18 1.81 6.45 -2.91 -0.02 1.79 16 35 H 0.43 0.45 9.06 -74.06 -0.67 -0.22 16 36 H 0.20 2.76 7.26 -2.91 -0.02 2.74 16 37 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.10 1.61 4.85 -2.39 -0.01 1.60 16 39 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.06 1.94 7.70 -2.39 -0.02 1.92 16 42 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 43 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 44 H 0.06 3.06 6.36 -2.39 -0.02 3.05 16 45 H 0.03 1.66 7.19 -2.39 -0.02 1.65 16 46 H 0.00 -0.15 7.81 -2.39 -0.02 -0.17 16 47 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -83.46 370.22 -0.86 -84.32 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.34 Total: 9.54 kcal Atomic # 6 Polarization: 18.97 SS G_CDS: 6.38 Total: 25.35 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -7.53 Total: -127.64 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -2.08 Total: -39.78 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -83.46 -0.86 -84.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049741546.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.685 kcal (2) G-P(sol) polarization free energy of solvation -83.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds