Wall clock time and date at job start Wed Apr 1 2020 05:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35681 * 116.99957 * 2 1 4 4 C 1.38923 * 119.68325 * 180.29997 * 3 2 1 5 5 C 1.38376 * 119.11030 * 180.25523 * 4 3 2 6 6 C 1.50699 * 120.75680 * 179.73382 * 5 4 3 7 7 C 1.50698 * 109.46799 * 269.72074 * 6 5 4 8 8 O 1.21278 * 120.00109 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99629 * 180.02562 * 7 6 5 10 10 C 1.47137 * 121.06132 * 0.02562 * 9 7 6 11 11 C 1.53223 * 108.72646 * 127.68522 * 10 9 7 12 12 O 1.43118 * 109.35471 * 54.19296 * 11 10 9 13 13 C 1.42353 * 113.99314 * 300.22319 * 12 11 10 14 14 C 1.52915 * 114.29884 * 285.04719 * 13 12 11 15 15 N 1.47166 * 87.84964 * 271.72443 * 14 13 12 16 16 C 1.36930 * 136.00334 * 153.32674 * 15 14 13 17 17 H 1.08004 * 119.99699 * 354.27155 * 16 15 14 18 18 C 1.38812 * 120.00284 * 174.27329 * 16 15 14 19 19 N 1.31615 * 120.00368 * 185.32852 * 18 16 15 20 20 Si 1.86805 * 119.99570 * 5.33572 * 18 16 15 21 21 H 1.48503 * 109.46598 * 185.37040 * 20 18 16 22 22 H 1.48495 * 109.47085 * 305.36485 * 20 18 16 23 23 H 1.48494 * 109.47362 * 65.36705 * 20 18 16 24 24 C 1.47183 * 87.99696 * 333.57662 * 15 14 13 25 25 C 1.47358 * 121.06000 * 179.97438 * 9 7 6 26 26 C 1.38828 * 118.48332 * 359.45895 * 5 4 3 27 27 C 1.38046 * 119.29016 * 0.27327 * 26 5 4 28 28 N 1.31959 * 120.83458 * 0.02562 * 27 26 5 29 29 H 1.08997 * 109.46667 * 299.99765 * 1 2 3 30 30 H 1.08997 * 109.47191 * 59.99353 * 1 2 3 31 31 H 1.08996 * 109.47362 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.44394 * 359.97438 * 4 3 2 33 33 H 1.09004 * 109.47117 * 149.71974 * 6 5 4 34 34 H 1.09001 * 109.46973 * 29.71766 * 6 5 4 35 35 H 1.08997 * 109.59329 * 247.45378 * 10 9 7 36 36 H 1.08991 * 109.59640 * 7.91261 * 10 9 7 37 37 H 1.08996 * 109.49198 * 174.15950 * 11 10 9 38 38 H 1.09000 * 109.48909 * 294.23331 * 11 10 9 39 39 H 1.09000 * 113.49392 * 156.97408 * 14 13 12 40 40 H 1.09004 * 113.48835 * 26.46712 * 14 13 12 41 41 H 0.97002 * 119.99753 * 354.99129 * 19 18 16 42 42 H 1.08993 * 113.48874 * 141.16922 * 24 15 14 43 43 H 1.08999 * 113.49290 * 271.68301 * 24 15 14 44 44 H 1.09004 * 109.74635 * 108.63092 * 25 9 7 45 45 H 1.09000 * 109.79022 * 347.93550 * 25 9 7 46 46 H 1.08003 * 120.35052 * 180.25443 * 26 5 4 47 47 H 1.08002 * 119.58113 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2740 -0.0063 5 6 4.0486 2.5131 -0.0009 6 6 5.5513 2.6269 -0.0014 7 6 6.0526 2.6649 1.4193 8 8 5.2670 2.6060 2.3413 9 7 7.3740 2.7655 1.6651 10 6 8.3474 2.8403 0.5643 11 6 9.2474 4.0605 0.7854 12 8 9.8288 3.9905 2.0913 13 6 8.8760 3.9669 3.1487 14 6 8.2173 5.3175 3.4324 15 7 9.3280 5.6029 4.3547 16 6 9.9503 6.7264 4.8294 17 1 9.6826 7.6975 4.4396 18 6 10.9251 6.6175 5.8116 19 7 11.4484 7.7021 6.3427 20 14 11.4945 4.9313 6.3793 21 1 12.4374 5.0843 7.5163 22 1 10.3204 4.1329 6.8141 23 1 12.1782 4.2366 5.2591 24 6 9.4806 4.1505 4.5383 25 6 7.8897 2.8052 3.0449 26 6 3.2505 3.6491 -0.0007 27 6 1.8771 3.5096 -0.0003 28 7 1.3187 2.3140 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 4.0229 0.3695 -0.0108 33 1 5.8462 3.5417 -0.5155 34 1 5.9805 1.7668 -0.5152 35 1 8.9550 1.9354 0.5516 36 1 7.8198 2.9423 -0.3840 37 1 10.0381 4.0699 0.0353 38 1 8.6536 4.9705 0.7000 39 1 7.2506 5.2337 3.9290 40 1 8.1912 5.9786 2.5661 41 1 11.2067 8.5760 5.9980 42 1 10.5195 3.8278 4.6045 43 1 8.8609 3.7462 5.3386 44 1 8.3984 1.8690 3.2750 45 1 7.0662 2.9579 3.7424 46 1 3.6995 4.6314 -0.0007 47 1 1.2518 4.3902 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053429311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:58 Heat of formation + Delta-G solvation = 7.004840 kcal Electronic energy + Delta-G solvation = -30717.095294 eV Core-core repulsion = 26482.719172 eV Total energy + Delta-G solvation = -4234.376122 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.10757 -40.60145 -39.21532 -38.09711 -36.70127 -34.72939 -34.13306 -32.48671 -31.04197 -30.58927 -29.37274 -27.99368 -27.37293 -25.88571 -25.66295 -23.73906 -23.51853 -22.52821 -21.35138 -19.67982 -19.09912 -18.11255 -17.55841 -17.47502 -17.42976 -16.56249 -16.26751 -16.24153 -15.89424 -15.76135 -15.23301 -14.81392 -14.65562 -14.53471 -14.19293 -13.97703 -13.83676 -13.57529 -13.27838 -13.20784 -13.14734 -13.03466 -12.59730 -12.28775 -12.16311 -11.88684 -11.77196 -11.49474 -11.42955 -11.17448 -10.83182 -10.54755 -10.47423 -10.24950 -9.95144 -9.90365 -9.72682 -9.21259 -9.09304 -8.90410 -8.77128 -8.55043 -7.15177 -6.30373 -3.21581 0.86927 0.97163 2.41300 2.67167 2.82123 3.41801 3.46807 3.50374 3.64532 3.76775 4.01081 4.18431 4.30932 4.53757 4.55323 4.61112 4.71385 4.75287 4.79604 4.82204 4.84232 4.96243 5.00955 5.02518 5.05135 5.07223 5.14304 5.32022 5.39520 5.44918 5.51482 5.56248 5.60395 5.65589 5.80542 5.98389 6.00964 6.10684 6.12221 6.15659 6.18959 6.31243 6.46474 6.95035 7.05075 7.15932 7.46831 7.57897 7.95254 8.23536 8.97894 9.50127 10.33726 11.22269 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021567 B = 0.002298 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.942573 B =12182.555880 C =12396.764014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.310 6.310 3 C 0.320 3.680 4 C -0.176 4.176 5 C 0.013 3.987 6 C -0.104 4.104 7 C 0.520 3.480 8 O -0.528 6.528 9 N -0.612 5.612 10 C 0.071 3.929 11 C 0.045 3.955 12 O -0.335 6.335 13 C 0.058 3.942 14 C 0.107 3.893 15 N -0.618 5.618 16 C -0.300 4.300 17 H 0.082 0.918 18 C -0.025 4.025 19 N -0.935 5.935 20 Si 1.069 2.931 21 H -0.294 1.294 22 H -0.287 1.287 23 H -0.290 1.290 24 C 0.114 3.886 25 C 0.102 3.898 26 C -0.194 4.194 27 C 0.140 3.860 28 N -0.542 5.542 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.139 0.861 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.260 0.740 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.105 0.895 46 H 0.137 0.863 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.395 -15.177 -19.578 29.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.217 6.217 3 C 0.141 3.859 4 C -0.196 4.196 5 C 0.005 3.995 6 C -0.144 4.144 7 C 0.307 3.693 8 O -0.404 6.404 9 N -0.346 5.346 10 C -0.052 4.052 11 C -0.033 4.033 12 O -0.252 6.252 13 C 0.016 3.984 14 C -0.020 4.020 15 N -0.346 5.346 16 C -0.426 4.426 17 H 0.100 0.900 18 C -0.224 4.224 19 N -0.577 5.577 20 Si 0.902 3.098 21 H -0.222 1.222 22 H -0.214 1.214 23 H -0.218 1.218 24 C -0.011 4.011 25 C -0.021 4.021 26 C -0.214 4.214 27 C -0.015 4.015 28 N -0.266 5.266 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.157 0.843 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.124 0.876 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.123 0.877 46 H 0.155 0.845 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.321 -16.088 -17.854 29.051 hybrid contribution -0.583 1.100 -1.258 1.770 sum -16.904 -14.988 -19.112 29.591 Atomic orbital electron populations 1.22844 0.77233 1.02874 1.02459 1.86232 1.22921 1.24610 1.87924 1.19728 0.89181 0.84707 0.92253 1.20828 0.92086 0.98812 1.07914 1.19428 0.94374 0.92436 0.93270 1.20736 0.91998 1.05847 0.95785 1.20285 0.81639 0.76517 0.90857 1.90755 1.54422 1.49104 1.46103 1.48189 1.05602 1.73171 1.07673 1.22504 0.92074 1.00570 0.90061 1.22923 0.97595 0.96254 0.86538 1.88005 1.30495 1.94062 1.12671 1.23055 0.90619 0.94411 0.90357 1.22805 0.92484 0.92803 0.93885 1.45794 1.34675 1.00506 1.53650 1.20095 1.18010 0.84205 1.20267 0.89993 1.25740 0.96285 1.05472 0.94855 1.70924 1.48105 0.97808 1.40865 0.83718 0.76102 0.74324 0.75665 1.22163 1.21370 1.21797 1.22643 1.00175 0.87210 0.91122 1.22153 0.98042 0.98933 0.82955 1.21853 0.94829 0.99322 1.05435 1.22339 0.92677 0.93604 0.92844 1.67283 1.41017 0.98877 1.19410 0.92263 0.92361 0.88680 0.84322 0.87057 0.87229 0.90096 0.88948 0.87644 0.92535 0.93554 0.93626 0.92994 0.91688 0.91997 0.90531 0.87670 0.84499 0.82231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 101.05 1.05 1.37 16 2 O -0.31 -3.37 10.48 -18.75 -0.20 -3.57 16 3 C 0.32 3.73 7.49 -17.12 -0.13 3.60 16 4 C -0.18 -1.86 9.74 -39.28 -0.38 -2.25 16 5 C 0.01 0.13 4.41 -104.35 -0.46 -0.33 16 6 C -0.10 -0.81 4.25 -29.04 -0.12 -0.93 16 7 C 0.52 6.24 7.71 -10.98 -0.08 6.15 16 8 O -0.53 -8.58 15.53 5.56 0.09 -8.49 16 9 N -0.61 -7.17 3.03 -172.51 -0.52 -7.69 16 10 C 0.07 0.61 6.50 -3.58 -0.02 0.59 16 11 C 0.04 0.51 6.90 37.27 0.26 0.77 16 12 O -0.33 -5.76 10.53 -35.23 -0.37 -6.13 16 13 C 0.06 1.02 1.27 -90.98 -0.12 0.90 16 14 C 0.11 2.17 7.91 -8.21 -0.06 2.11 16 15 N -0.62 -15.57 3.70 -184.94 -0.68 -16.26 16 16 C -0.30 -8.82 11.08 -15.06 -0.17 -8.98 16 17 H 0.08 2.54 8.05 -52.48 -0.42 2.11 16 18 C -0.03 -0.76 5.50 -17.43 -0.10 -0.86 16 19 N -0.93 -29.88 13.70 55.49 0.76 -29.12 16 20 Si 1.07 27.11 25.15 -169.99 -4.27 22.83 16 21 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 22 H -0.29 -6.68 6.18 56.52 0.35 -6.34 16 23 H -0.29 -7.01 6.53 56.52 0.37 -6.64 16 24 C 0.11 2.45 5.10 -8.34 -0.04 2.41 16 25 C 0.10 1.46 5.83 -3.71 -0.02 1.44 16 26 C -0.19 -1.83 9.81 -39.43 -0.39 -2.22 16 27 C 0.14 1.36 11.18 -17.57 -0.20 1.16 16 28 N -0.54 -6.19 9.22 -13.33 -0.12 -6.31 16 29 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.06 0.43 8.10 -51.93 -0.42 0.00 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 33 H 0.11 0.61 7.65 -51.93 -0.40 0.21 16 34 H 0.11 0.57 7.95 -51.93 -0.41 0.16 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.46 6.03 -51.93 -0.31 0.15 16 37 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.67 7.30 -51.93 -0.38 0.29 16 39 H 0.05 0.93 7.93 -51.93 -0.41 0.52 16 40 H 0.05 0.91 7.36 -51.93 -0.38 0.53 16 41 H 0.26 8.21 8.73 -40.82 -0.36 7.85 16 42 H 0.07 1.46 4.69 -51.93 -0.24 1.21 16 43 H 0.06 1.25 7.62 -51.93 -0.40 0.86 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.11 1.63 6.89 -51.93 -0.36 1.27 16 46 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 47 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 379.36 15.07 5.72 5.72 Total: -1.00 -38.20 379.36 -7.35 -45.55 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.75 Total: -1.45 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -0.99 Total: 4.92 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.57 Total: -59.38 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.48 Total: -18.19 kcal Atomic # 14 Polarization: 27.11 SS G_CDS: -4.27 Total: 22.83 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.20 -7.35 -45.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053429311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.557 kcal (2) G-P(sol) polarization free energy of solvation -38.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds