Wall clock time and date at job start Wed Apr 1 2020 05:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35681 * 116.99957 * 2 1 4 4 C 1.38923 * 119.68325 * 180.29997 * 3 2 1 5 5 C 1.38376 * 119.11030 * 180.25523 * 4 3 2 6 6 C 1.50699 * 120.75680 * 179.73382 * 5 4 3 7 7 C 1.50698 * 109.46799 * 269.72074 * 6 5 4 8 8 O 1.21278 * 120.00109 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99629 * 180.02562 * 7 6 5 10 10 C 1.47137 * 121.06132 * 0.02562 * 9 7 6 11 11 C 1.53223 * 108.72646 * 127.68522 * 10 9 7 12 12 O 1.43118 * 109.35471 * 54.19296 * 11 10 9 13 13 C 1.42353 * 113.99314 * 300.22319 * 12 11 10 14 14 C 1.52915 * 114.29884 * 285.04719 * 13 12 11 15 15 N 1.47166 * 87.84964 * 271.72443 * 14 13 12 16 16 C 1.36930 * 136.00334 * 153.32674 * 15 14 13 17 17 H 1.08004 * 119.99699 * 354.27155 * 16 15 14 18 18 C 1.38812 * 120.00284 * 174.27329 * 16 15 14 19 19 N 1.31615 * 120.00368 * 185.32852 * 18 16 15 20 20 Si 1.86805 * 119.99570 * 5.33572 * 18 16 15 21 21 H 1.48503 * 109.46598 * 185.37040 * 20 18 16 22 22 H 1.48495 * 109.47085 * 305.36485 * 20 18 16 23 23 H 1.48494 * 109.47362 * 65.36705 * 20 18 16 24 24 C 1.47183 * 87.99696 * 333.57662 * 15 14 13 25 25 C 1.47358 * 121.06000 * 179.97438 * 9 7 6 26 26 C 1.38828 * 118.48332 * 359.45895 * 5 4 3 27 27 C 1.38046 * 119.29016 * 0.27327 * 26 5 4 28 28 N 1.31959 * 120.83458 * 0.02562 * 27 26 5 29 29 H 1.08997 * 109.46667 * 299.99765 * 1 2 3 30 30 H 1.08997 * 109.47191 * 59.99353 * 1 2 3 31 31 H 1.08996 * 109.47362 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.44394 * 359.97438 * 4 3 2 33 33 H 1.09004 * 109.47117 * 149.71974 * 6 5 4 34 34 H 1.09001 * 109.46973 * 29.71766 * 6 5 4 35 35 H 1.08997 * 109.59329 * 247.45378 * 10 9 7 36 36 H 1.08991 * 109.59640 * 7.91261 * 10 9 7 37 37 H 1.08996 * 109.49198 * 174.15950 * 11 10 9 38 38 H 1.09000 * 109.48909 * 294.23331 * 11 10 9 39 39 H 1.09000 * 113.49392 * 156.97408 * 14 13 12 40 40 H 1.09004 * 113.48835 * 26.46712 * 14 13 12 41 41 H 0.97002 * 119.99753 * 354.99129 * 19 18 16 42 42 H 1.08993 * 113.48874 * 141.16922 * 24 15 14 43 43 H 1.08999 * 113.49290 * 271.68301 * 24 15 14 44 44 H 1.09004 * 109.74635 * 108.63092 * 25 9 7 45 45 H 1.09000 * 109.79022 * 347.93550 * 25 9 7 46 46 H 1.08003 * 120.35052 * 180.25443 * 26 5 4 47 47 H 1.08002 * 119.58113 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2740 -0.0063 5 6 4.0486 2.5131 -0.0009 6 6 5.5513 2.6269 -0.0014 7 6 6.0526 2.6649 1.4193 8 8 5.2670 2.6060 2.3413 9 7 7.3740 2.7655 1.6651 10 6 8.3474 2.8403 0.5643 11 6 9.2474 4.0605 0.7854 12 8 9.8288 3.9905 2.0913 13 6 8.8760 3.9669 3.1487 14 6 8.2173 5.3175 3.4324 15 7 9.3280 5.6029 4.3547 16 6 9.9503 6.7264 4.8294 17 1 9.6826 7.6975 4.4396 18 6 10.9251 6.6175 5.8116 19 7 11.4484 7.7021 6.3427 20 14 11.4945 4.9313 6.3793 21 1 12.4374 5.0843 7.5163 22 1 10.3204 4.1329 6.8141 23 1 12.1782 4.2366 5.2591 24 6 9.4806 4.1505 4.5383 25 6 7.8897 2.8052 3.0449 26 6 3.2505 3.6491 -0.0007 27 6 1.8771 3.5096 -0.0003 28 7 1.3187 2.3140 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 4.0229 0.3695 -0.0108 33 1 5.8462 3.5417 -0.5155 34 1 5.9805 1.7668 -0.5152 35 1 8.9550 1.9354 0.5516 36 1 7.8198 2.9423 -0.3840 37 1 10.0381 4.0699 0.0353 38 1 8.6536 4.9705 0.7000 39 1 7.2506 5.2337 3.9290 40 1 8.1912 5.9786 2.5661 41 1 11.2067 8.5760 5.9980 42 1 10.5195 3.8278 4.6045 43 1 8.8609 3.7462 5.3386 44 1 8.3984 1.8690 3.2750 45 1 7.0662 2.9579 3.7424 46 1 3.6995 4.6314 -0.0007 47 1 1.2518 4.3902 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053429311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:57 Heat of formation + Delta-G solvation = -23.871818 kcal Electronic energy + Delta-G solvation = -30718.434207 eV Core-core repulsion = 26482.719172 eV Total energy + Delta-G solvation = -4235.715034 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.04182 -41.58190 -40.33233 -38.85649 -38.01979 -35.80335 -34.89409 -34.59477 -31.94712 -31.69403 -30.15557 -29.35907 -28.14371 -27.37369 -27.11860 -24.53491 -24.45897 -23.60804 -22.77969 -20.99216 -20.14181 -19.62067 -18.84596 -18.38803 -18.15773 -17.88093 -17.20382 -17.04171 -16.95548 -16.71611 -16.27792 -16.19155 -15.63741 -15.45490 -15.34257 -15.25022 -15.05444 -15.00790 -14.69392 -14.22435 -14.20831 -13.89203 -13.48258 -13.29172 -13.11737 -12.88646 -12.86525 -12.70408 -12.50004 -12.39076 -12.18832 -12.16368 -11.85681 -11.44119 -11.32164 -11.08284 -11.04514 -10.75998 -10.68497 -10.50708 -9.60813 -9.49442 -9.22811 -8.68019 -5.50320 0.15451 0.23684 1.37765 1.48727 1.56079 1.67123 1.82704 2.14067 2.52818 2.55332 2.76850 2.87079 3.15926 3.33064 3.35981 3.50865 3.59348 3.76434 3.96994 3.99378 4.11407 4.14939 4.17033 4.27697 4.35367 4.41154 4.43551 4.46898 4.48465 4.50589 4.54478 4.57459 4.60476 4.67254 4.74007 4.77616 4.81522 4.90777 4.92124 4.97926 5.10666 5.27992 5.30877 5.45975 5.89913 6.23399 6.25629 6.33201 6.65137 6.84746 7.08546 7.27802 8.20108 8.87177 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021567 B = 0.002298 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.942573 B =12182.555880 C =12396.764014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.324 6.324 3 C 0.297 3.703 4 C -0.187 4.187 5 C 0.006 3.994 6 C -0.095 4.095 7 C 0.518 3.482 8 O -0.578 6.578 9 N -0.612 5.612 10 C 0.075 3.925 11 C 0.033 3.967 12 O -0.365 6.365 13 C 0.090 3.910 14 C 0.105 3.895 15 N -0.652 5.652 16 C -0.289 4.289 17 H 0.048 0.952 18 C -0.086 4.086 19 N -0.969 5.969 20 Si 1.108 2.892 21 H -0.302 1.302 22 H -0.256 1.256 23 H -0.272 1.272 24 C 0.102 3.898 25 C 0.110 3.890 26 C -0.199 4.199 27 C 0.128 3.872 28 N -0.560 5.560 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.121 0.879 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.099 0.901 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.044 0.956 41 H 0.245 0.755 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.156 0.844 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.712 -17.870 -22.145 33.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.232 6.232 3 C 0.118 3.882 4 C -0.208 4.208 5 C -0.002 4.002 6 C -0.134 4.134 7 C 0.308 3.692 8 O -0.457 6.457 9 N -0.346 5.346 10 C -0.047 4.047 11 C -0.043 4.043 12 O -0.284 6.284 13 C 0.047 3.953 14 C -0.021 4.021 15 N -0.381 5.381 16 C -0.416 4.416 17 H 0.065 0.935 18 C -0.277 4.277 19 N -0.614 5.614 20 Si 0.934 3.066 21 H -0.230 1.230 22 H -0.181 1.181 23 H -0.199 1.199 24 C -0.023 4.023 25 C -0.014 4.014 26 C -0.219 4.219 27 C -0.027 4.027 28 N -0.284 5.284 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.140 0.860 32 H 0.168 0.832 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.118 0.882 36 H 0.156 0.844 37 H 0.151 0.849 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.114 0.886 45 H 0.109 0.891 46 H 0.173 0.827 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -16.675 -18.807 -20.499 32.434 hybrid contribution -0.579 2.034 -0.588 2.195 sum -17.254 -16.773 -21.087 31.995 Atomic orbital electron populations 1.23015 0.76004 1.04525 1.02073 1.86206 1.24272 1.24660 1.88035 1.20054 0.89957 0.84982 0.93158 1.21084 0.91902 0.99795 1.07973 1.19723 0.95714 0.92104 0.92700 1.20838 0.90435 1.09021 0.93132 1.20992 0.81060 0.75054 0.92090 1.90746 1.55624 1.51317 1.48017 1.48270 1.06274 1.72767 1.07240 1.22740 0.91530 0.99706 0.90683 1.23325 0.99118 0.97553 0.84313 1.87951 1.31524 1.94237 1.14644 1.22509 0.90032 0.93768 0.88957 1.22982 0.91535 0.94824 0.92751 1.45891 1.36350 1.01214 1.54624 1.19943 1.17551 0.84791 1.19320 0.93452 1.27129 0.96857 1.08101 0.95614 1.71031 1.49989 0.97810 1.42604 0.83280 0.76777 0.71008 0.75570 1.23015 1.18091 1.19868 1.22887 1.00425 0.84612 0.94395 1.21860 0.96729 0.97988 0.84814 1.22165 0.94836 1.00254 1.04674 1.22825 0.93565 0.93832 0.92462 1.67292 1.41669 0.99454 1.20029 0.93089 0.92265 0.86043 0.83241 0.83888 0.83701 0.88248 0.84374 0.84883 0.93315 0.93162 0.93803 0.94580 0.92354 0.90526 0.88583 0.89123 0.82674 0.80006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.38 113.37 1.18 1.75 16 2 O -0.32 -6.90 10.48 -89.99 -0.94 -7.84 16 3 C 0.30 6.71 7.49 84.80 0.63 7.34 16 4 C -0.19 -3.64 9.74 22.47 0.22 -3.42 16 5 C 0.01 0.10 4.41 -19.69 -0.09 0.01 16 6 C -0.10 -1.02 4.25 29.10 0.12 -0.90 16 7 C 0.52 10.59 7.71 87.66 0.68 11.26 16 8 O -0.58 -17.72 15.53 -3.02 -0.05 -17.76 16 9 N -0.61 -11.85 3.03 -818.07 -2.48 -14.33 16 10 C 0.07 0.87 6.50 86.33 0.56 1.43 16 11 C 0.03 0.63 6.90 72.06 0.50 1.13 16 12 O -0.37 -11.57 10.53 -148.98 -1.57 -13.14 16 13 C 0.09 2.96 1.27 -11.02 -0.01 2.95 16 14 C 0.10 4.18 7.91 83.31 0.66 4.84 16 15 N -0.65 -32.86 3.70 -739.91 -2.74 -35.60 16 16 C -0.29 -17.48 11.08 84.03 0.93 -16.55 16 17 H 0.05 3.10 8.05 -2.91 -0.02 3.07 16 18 C -0.09 -5.29 5.50 84.86 0.47 -4.82 16 19 N -0.97 -64.21 13.70 21.65 0.30 -63.91 16 20 Si 1.11 54.71 25.15 68.60 1.72 56.43 16 21 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 22 H -0.26 -11.20 6.18 99.48 0.61 -10.59 16 23 H -0.27 -12.50 6.53 99.48 0.65 -11.85 16 24 C 0.10 4.18 5.10 83.22 0.42 4.61 16 25 C 0.11 2.84 5.83 86.13 0.50 3.34 16 26 C -0.20 -3.30 9.81 22.37 0.22 -3.08 16 27 C 0.13 2.30 11.18 84.63 0.95 3.25 16 28 N -0.56 -12.46 9.22 -308.95 -2.85 -15.30 16 29 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 30 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 31 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.14 0.67 7.65 -2.38 -0.02 0.66 16 34 H 0.15 0.59 7.95 -2.39 -0.02 0.57 16 35 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.14 0.38 6.03 -2.39 -0.01 0.36 16 37 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 1.00 7.30 -2.39 -0.02 0.98 16 39 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 40 H 0.04 1.73 7.36 -2.38 -0.02 1.71 16 41 H 0.25 16.31 8.73 -92.71 -0.81 15.51 16 42 H 0.06 2.49 4.69 -2.39 -0.01 2.48 16 43 H 0.08 2.92 7.62 -2.39 -0.02 2.91 16 44 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 45 H 0.09 2.64 6.89 -2.39 -0.02 2.63 16 46 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 47 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -88.67 379.36 0.14 -88.53 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.80 Total: 9.78 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 7.94 Total: 13.14 kcal Atomic # 7 Polarization: -121.37 SS G_CDS: -7.77 Total: -129.14 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -2.56 Total: -38.74 kcal Atomic # 14 Polarization: 54.71 SS G_CDS: 1.72 Total: 56.43 kcal Total: -88.67 0.14 -88.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053429311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.659 kcal (2) G-P(sol) polarization free energy of solvation -88.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds