Wall clock time and date at job start Wed Apr 1 2020 05:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35740 * 116.99709 * 2 1 4 4 C 1.39291 * 120.85062 * 0.25384 * 3 2 1 5 5 C 1.37950 * 119.09321 * 180.29138 * 4 3 2 6 6 N 1.31981 * 120.82151 * 359.70125 * 5 4 3 7 7 C 1.31936 * 121.86565 * 0.02562 * 6 5 4 8 8 C 1.38001 * 120.82514 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.45333 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47343 * 264.99835 * 9 8 7 11 11 O 1.21279 * 119.99477 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00292 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00288 * 180.02562 * 12 10 9 14 14 H 1.09007 * 110.76729 * 31.46511 * 13 12 10 15 15 C 1.55062 * 111.04835 * 267.81300 * 13 12 10 16 16 O 1.44606 * 103.66384 * 205.24040 * 15 13 12 17 17 C 1.42836 * 106.73926 * 39.08592 * 16 15 13 18 18 C 1.52648 * 115.96717 * 202.46755 * 17 16 15 19 19 N 1.47223 * 87.78196 * 218.41260 * 18 17 16 20 20 C 1.36939 * 135.96384 * 206.37897 * 19 18 17 21 21 H 1.07996 * 119.99836 * 7.81143 * 20 19 18 22 22 C 1.38810 * 119.99906 * 187.80227 * 20 19 18 23 23 N 1.31612 * 120.00308 * 195.33897 * 22 20 19 24 24 Si 1.86806 * 119.99746 * 15.34152 * 22 20 19 25 25 H 1.48499 * 109.46813 * 269.99462 * 24 22 20 26 26 H 1.48493 * 109.47361 * 29.99549 * 24 22 20 27 27 H 1.48501 * 109.47050 * 149.99564 * 24 22 20 28 28 C 1.47215 * 88.06632 * 26.63673 * 19 18 17 29 29 C 1.53317 * 108.32781 * 334.30796 * 17 16 15 30 30 H 1.09006 * 109.47035 * 299.99468 * 1 2 3 31 31 H 1.08999 * 109.47652 * 59.99357 * 1 2 3 32 32 H 1.09003 * 109.47058 * 179.97438 * 1 2 3 33 33 H 1.07996 * 120.44965 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.58568 * 179.72870 * 5 4 3 35 35 H 1.08003 * 119.59079 * 180.02562 * 7 6 5 36 36 H 1.09004 * 109.47155 * 145.00303 * 9 8 7 37 37 H 1.08997 * 109.47441 * 25.00434 * 9 8 7 38 38 H 0.97005 * 120.00233 * 359.97438 * 12 10 9 39 39 H 1.08995 * 110.58189 * 323.78201 * 15 13 12 40 40 H 1.08999 * 110.58659 * 86.69681 * 15 13 12 41 41 H 1.09003 * 113.49641 * 103.68184 * 18 17 16 42 42 H 1.08994 * 113.55773 * 333.15245 * 18 17 16 43 43 H 0.97005 * 119.99874 * 354.91217 * 23 22 20 44 44 H 1.08996 * 113.50097 * 88.09285 * 28 19 18 45 45 H 1.08997 * 113.50328 * 218.64058 * 28 19 18 46 46 H 1.08996 * 110.57019 * 120.18973 * 29 17 16 47 47 H 1.09006 * 110.55950 * 243.04391 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3888 0.0053 5 6 1.9675 3.5982 -0.0010 6 7 3.2864 3.6458 -0.0060 7 6 4.0230 2.5511 -0.0057 8 6 3.4345 1.3029 -0.0006 9 6 4.2838 0.0581 -0.0009 10 6 4.4594 -0.4300 -1.4159 11 8 3.9457 0.1739 -2.3337 12 7 5.1871 -1.5375 -1.6613 13 6 5.3582 -2.0116 -3.0369 14 1 5.3577 -1.1759 -3.7367 15 6 4.2639 -3.0451 -3.4099 16 8 4.8789 -3.8309 -4.4565 17 6 6.2467 -4.0107 -4.0863 18 6 7.2116 -4.3266 -5.2261 19 7 7.8984 -5.2535 -4.3115 20 6 9.1660 -5.7570 -4.1890 21 1 9.9624 -5.3712 -4.8079 22 6 9.4272 -6.7633 -3.2691 23 7 10.6686 -7.0394 -2.9305 24 14 8.0164 -7.7256 -2.5119 25 1 7.5659 -7.0483 -1.2695 26 1 6.8890 -7.7924 -3.4760 27 1 8.4730 -9.1011 -2.1882 28 6 6.6243 -5.4070 -3.5902 29 6 6.6565 -2.8474 -3.1755 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 0.2244 2.3567 0.0099 34 1 1.4006 4.5174 -0.0014 35 1 5.0999 2.6329 -0.0095 36 1 3.7954 -0.7152 0.5921 37 1 5.2595 0.2838 0.4293 38 1 5.5982 -2.0203 -0.9272 39 1 4.0209 -3.6722 -2.5522 40 1 3.3721 -2.5413 -3.7827 41 1 7.8248 -3.4763 -5.5246 42 1 6.7379 -4.8229 -6.0730 43 1 11.4042 -6.5916 -3.3771 44 1 5.9900 -6.1972 -3.9918 45 1 6.7419 -5.4683 -2.5083 46 1 6.9789 -3.2180 -2.2025 47 1 7.4446 -2.2558 -3.6414 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053843497.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:21 Heat of formation + Delta-G solvation = -9.773698 kcal Electronic energy + Delta-G solvation = -30398.696550 eV Core-core repulsion = 26163.592856 eV Total energy + Delta-G solvation = -4235.103694 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.19484 -40.44164 -39.30674 -38.54132 -36.69531 -34.64446 -33.70046 -32.37336 -31.57158 -30.66702 -28.72174 -28.14989 -27.63896 -25.76224 -25.45998 -23.29827 -23.27825 -21.68062 -21.43908 -20.61898 -19.15231 -18.73935 -17.57127 -17.51002 -17.40239 -16.69969 -16.23096 -15.79036 -15.65514 -15.40752 -15.23953 -15.04992 -14.87419 -14.60276 -14.30913 -13.88989 -13.76947 -13.51214 -13.43725 -13.33982 -12.88928 -12.78960 -12.66878 -12.29594 -11.99306 -11.72354 -11.66638 -11.57735 -11.45144 -11.13512 -10.85698 -10.60339 -10.39179 -10.11508 -9.89600 -9.84565 -9.47685 -9.32608 -9.19390 -9.07257 -8.91611 -8.74095 -7.24142 -6.35481 -3.27820 0.72316 1.01884 2.48107 2.70657 2.93290 3.36158 3.46813 3.51623 3.60009 4.04641 4.09065 4.25275 4.39415 4.46485 4.51056 4.54919 4.66495 4.70290 4.74117 4.80678 4.84299 4.88352 4.92603 4.96178 5.05126 5.18353 5.19190 5.21499 5.35741 5.40326 5.55809 5.68429 5.74862 5.75650 5.96339 6.09938 6.15947 6.19021 6.27812 6.29998 6.30281 6.34377 6.56610 6.76833 7.04043 7.28793 7.33208 7.68665 8.06731 8.19439 8.92591 9.45082 10.31228 11.14644 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.002240 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.314758 B =12497.579033 C =12679.307272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.184 3.816 4 C -0.263 4.263 5 C 0.134 3.866 6 N -0.507 5.507 7 C 0.146 3.854 8 C -0.150 4.150 9 C -0.090 4.090 10 C 0.519 3.481 11 O -0.533 6.533 12 N -0.719 5.719 13 C 0.111 3.889 14 H 0.106 0.894 15 C 0.040 3.960 16 O -0.357 6.357 17 C 0.060 3.940 18 C 0.128 3.872 19 N -0.616 5.616 20 C -0.302 4.302 21 H 0.084 0.916 22 C -0.022 4.022 23 N -0.930 5.930 24 Si 1.060 2.940 25 H -0.294 1.294 26 H -0.281 1.281 27 H -0.294 1.294 28 C 0.093 3.907 29 C -0.117 4.117 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.138 0.862 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.404 0.596 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.052 0.948 42 H 0.046 0.954 43 H 0.262 0.738 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.023 18.099 9.690 29.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.130 3.870 4 C -0.283 4.283 5 C -0.022 4.022 6 N -0.219 5.219 7 C -0.010 4.010 8 C -0.153 4.153 9 C -0.131 4.131 10 C 0.305 3.695 11 O -0.409 6.409 12 N -0.371 5.371 13 C 0.005 3.995 14 H 0.124 0.876 15 C -0.038 4.038 16 O -0.273 6.273 17 C 0.019 3.981 18 C 0.002 3.998 19 N -0.346 5.346 20 C -0.428 4.428 21 H 0.101 0.899 22 C -0.222 4.222 23 N -0.572 5.572 24 Si 0.891 3.109 25 H -0.222 1.222 26 H -0.207 1.207 27 H -0.222 1.222 28 C -0.033 4.033 29 C -0.156 4.156 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.156 0.844 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.239 0.761 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.105 0.895 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.132 17.759 9.930 29.335 hybrid contribution -0.116 0.075 -0.730 0.743 sum -21.248 17.833 9.200 29.226 Atomic orbital electron populations 1.23153 0.77632 1.04538 1.01598 1.86065 1.21974 1.26197 1.87425 1.19105 0.91809 0.84730 0.91349 1.22183 1.01495 0.93172 1.11492 1.22552 0.90330 0.96952 0.92403 1.67735 1.07104 1.31879 1.15197 1.22536 1.00273 0.86112 0.92086 1.19706 0.90811 0.96356 1.08454 1.20407 1.01306 0.96186 0.95181 1.20503 0.77896 0.80004 0.91079 1.90719 1.47416 1.56522 1.46250 1.45941 1.53766 1.28410 1.09031 1.22665 0.95371 0.97677 0.83759 0.87632 1.23875 0.96334 0.91931 0.91703 1.88801 1.22376 1.72737 1.43406 1.23550 0.81524 0.95286 0.97746 1.22399 0.90751 0.93915 0.92765 1.45968 1.04690 1.53572 1.30396 1.20100 0.81424 1.18100 1.23202 0.89851 1.25767 1.01937 0.96840 0.97642 1.70906 0.98032 1.47592 1.40649 0.83810 0.74686 0.76629 0.75730 1.22180 1.20690 1.22166 1.23112 0.88417 0.94465 0.97322 1.22621 0.96465 0.95299 1.01171 0.92358 0.92246 0.87743 0.84376 0.82555 0.82201 0.87349 0.87380 0.76108 0.92007 0.89001 0.92984 0.93666 0.92786 0.92895 0.92942 0.89515 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.84 101.05 0.99 1.13 16 2 O -0.31 -2.84 9.77 -18.93 -0.18 -3.02 16 3 C 0.18 1.82 6.70 -38.82 -0.26 1.55 16 4 C -0.26 -2.17 9.11 -39.30 -0.36 -2.53 16 5 C 0.13 1.17 11.17 -17.59 -0.20 0.97 16 6 N -0.51 -5.44 10.36 -13.33 -0.14 -5.57 16 7 C 0.15 1.44 10.84 -17.59 -0.19 1.25 16 8 C -0.15 -1.48 4.40 -104.34 -0.46 -1.94 16 9 C -0.09 -0.74 5.60 -29.04 -0.16 -0.90 16 10 C 0.52 5.90 7.82 -10.99 -0.09 5.82 16 11 O -0.53 -8.21 15.68 5.56 0.09 -8.12 16 12 N -0.72 -7.54 5.20 -51.72 -0.27 -7.81 16 13 C 0.11 1.44 3.51 -65.77 -0.23 1.21 16 14 H 0.11 1.50 7.54 -51.93 -0.39 1.11 16 15 C 0.04 0.55 7.43 38.25 0.28 0.83 16 16 O -0.36 -6.09 11.32 -35.23 -0.40 -6.48 16 17 C 0.06 1.08 1.66 -90.68 -0.15 0.93 16 18 C 0.13 2.61 8.20 -8.04 -0.07 2.54 16 19 N -0.62 -15.03 3.58 -184.65 -0.66 -15.69 16 20 C -0.30 -8.55 11.03 -15.06 -0.17 -8.72 16 21 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 22 C -0.02 -0.66 5.50 -17.43 -0.10 -0.75 16 23 N -0.93 -28.85 13.70 55.49 0.76 -28.09 16 24 Si 1.06 26.25 25.51 -169.99 -4.34 21.91 16 25 H -0.29 -6.85 6.97 56.52 0.39 -6.46 16 26 H -0.28 -6.58 5.65 56.52 0.32 -6.26 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 C 0.09 1.97 5.12 -7.91 -0.04 1.93 16 29 C -0.12 -1.76 6.20 -25.50 -0.16 -1.91 16 30 H 0.06 0.22 7.70 -51.93 -0.40 -0.18 16 31 H 0.06 0.30 7.72 -51.93 -0.40 -0.10 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.14 0.76 6.47 -52.49 -0.34 0.42 16 34 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.16 1.22 8.06 -52.48 -0.42 0.79 16 36 H 0.11 0.75 7.78 -51.93 -0.40 0.35 16 37 H 0.11 0.58 8.06 -51.93 -0.42 0.16 16 38 H 0.40 3.28 8.41 -40.82 -0.34 2.94 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.05 1.00 7.91 -51.93 -0.41 0.59 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.26 8.02 8.73 -40.82 -0.36 7.67 16 44 H 0.05 1.16 6.98 -51.93 -0.36 0.79 16 45 H 0.05 1.11 6.08 -51.93 -0.32 0.79 16 46 H 0.09 1.27 7.45 -51.93 -0.39 0.89 16 47 H 0.09 1.35 7.82 -51.93 -0.41 0.94 16 LS Contribution 384.37 15.07 5.79 5.79 Total: -1.00 -36.57 384.37 -7.47 -44.05 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.78 Total: 1.62 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -1.34 Total: 1.41 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.31 Total: -57.15 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.50 Total: -17.63 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -4.34 Total: 21.91 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.57 -7.47 -44.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053843497.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.274 kcal (2) G-P(sol) polarization free energy of solvation -36.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds