Wall clock time and date at job start Wed Apr 1 2020 05:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35740 * 116.99709 * 2 1 4 4 C 1.39291 * 120.85062 * 0.25384 * 3 2 1 5 5 C 1.37950 * 119.09321 * 180.29138 * 4 3 2 6 6 N 1.31981 * 120.82151 * 359.70125 * 5 4 3 7 7 C 1.31936 * 121.86565 * 0.02562 * 6 5 4 8 8 C 1.38001 * 120.82514 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.45333 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47343 * 264.99835 * 9 8 7 11 11 O 1.21279 * 119.99477 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00292 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00288 * 180.02562 * 12 10 9 14 14 H 1.09007 * 110.76729 * 31.46511 * 13 12 10 15 15 C 1.55062 * 111.04835 * 267.81300 * 13 12 10 16 16 O 1.44606 * 103.66384 * 205.24040 * 15 13 12 17 17 C 1.42836 * 106.73926 * 39.08592 * 16 15 13 18 18 C 1.52648 * 115.96717 * 202.46755 * 17 16 15 19 19 N 1.47223 * 87.78196 * 218.41260 * 18 17 16 20 20 C 1.36939 * 135.96384 * 206.37897 * 19 18 17 21 21 H 1.07996 * 119.99836 * 7.81143 * 20 19 18 22 22 C 1.38810 * 119.99906 * 187.80227 * 20 19 18 23 23 N 1.31612 * 120.00308 * 195.33897 * 22 20 19 24 24 Si 1.86806 * 119.99746 * 15.34152 * 22 20 19 25 25 H 1.48499 * 109.46813 * 269.99462 * 24 22 20 26 26 H 1.48493 * 109.47361 * 29.99549 * 24 22 20 27 27 H 1.48501 * 109.47050 * 149.99564 * 24 22 20 28 28 C 1.47215 * 88.06632 * 26.63673 * 19 18 17 29 29 C 1.53317 * 108.32781 * 334.30796 * 17 16 15 30 30 H 1.09006 * 109.47035 * 299.99468 * 1 2 3 31 31 H 1.08999 * 109.47652 * 59.99357 * 1 2 3 32 32 H 1.09003 * 109.47058 * 179.97438 * 1 2 3 33 33 H 1.07996 * 120.44965 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.58568 * 179.72870 * 5 4 3 35 35 H 1.08003 * 119.59079 * 180.02562 * 7 6 5 36 36 H 1.09004 * 109.47155 * 145.00303 * 9 8 7 37 37 H 1.08997 * 109.47441 * 25.00434 * 9 8 7 38 38 H 0.97005 * 120.00233 * 359.97438 * 12 10 9 39 39 H 1.08995 * 110.58189 * 323.78201 * 15 13 12 40 40 H 1.08999 * 110.58659 * 86.69681 * 15 13 12 41 41 H 1.09003 * 113.49641 * 103.68184 * 18 17 16 42 42 H 1.08994 * 113.55773 * 333.15245 * 18 17 16 43 43 H 0.97005 * 119.99874 * 354.91217 * 23 22 20 44 44 H 1.08996 * 113.50097 * 88.09285 * 28 19 18 45 45 H 1.08997 * 113.50328 * 218.64058 * 28 19 18 46 46 H 1.08996 * 110.57019 * 120.18973 * 29 17 16 47 47 H 1.09006 * 110.55950 * 243.04391 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3888 0.0053 5 6 1.9675 3.5982 -0.0010 6 7 3.2864 3.6458 -0.0060 7 6 4.0230 2.5511 -0.0057 8 6 3.4345 1.3029 -0.0006 9 6 4.2838 0.0581 -0.0009 10 6 4.4594 -0.4300 -1.4159 11 8 3.9457 0.1739 -2.3337 12 7 5.1871 -1.5375 -1.6613 13 6 5.3582 -2.0116 -3.0369 14 1 5.3577 -1.1759 -3.7367 15 6 4.2639 -3.0451 -3.4099 16 8 4.8789 -3.8309 -4.4565 17 6 6.2467 -4.0107 -4.0863 18 6 7.2116 -4.3266 -5.2261 19 7 7.8984 -5.2535 -4.3115 20 6 9.1660 -5.7570 -4.1890 21 1 9.9624 -5.3712 -4.8079 22 6 9.4272 -6.7633 -3.2691 23 7 10.6686 -7.0394 -2.9305 24 14 8.0164 -7.7256 -2.5119 25 1 7.5659 -7.0483 -1.2695 26 1 6.8890 -7.7924 -3.4760 27 1 8.4730 -9.1011 -2.1882 28 6 6.6243 -5.4070 -3.5902 29 6 6.6565 -2.8474 -3.1755 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 0.2244 2.3567 0.0099 34 1 1.4006 4.5174 -0.0014 35 1 5.0999 2.6329 -0.0095 36 1 3.7954 -0.7152 0.5921 37 1 5.2595 0.2838 0.4293 38 1 5.5982 -2.0203 -0.9272 39 1 4.0209 -3.6722 -2.5522 40 1 3.3721 -2.5413 -3.7827 41 1 7.8248 -3.4763 -5.5246 42 1 6.7379 -4.8229 -6.0730 43 1 11.4042 -6.5916 -3.3771 44 1 5.9900 -6.1972 -3.9918 45 1 6.7419 -5.4683 -2.5083 46 1 6.9789 -3.2180 -2.2025 47 1 7.4446 -2.2558 -3.6414 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053843497.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:20 Heat of formation + Delta-G solvation = -38.135061 kcal Electronic energy + Delta-G solvation = -30399.926391 eV Core-core repulsion = 26163.592856 eV Total energy + Delta-G solvation = -4236.333535 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.94575 -41.65077 -40.33825 -39.14517 -38.19002 -35.71886 -34.51224 -34.38377 -32.19165 -31.77907 -30.24300 -28.86253 -28.29162 -27.30483 -27.11586 -24.07612 -23.88545 -23.39269 -22.51362 -21.54026 -20.77852 -19.48145 -19.32331 -18.38622 -18.15089 -17.80401 -17.28767 -16.76983 -16.69219 -16.56847 -16.13092 -16.07913 -15.79437 -15.71660 -15.30414 -15.19469 -15.07070 -14.67450 -14.59448 -14.25553 -14.14970 -14.12970 -13.44486 -13.27731 -13.14812 -12.88821 -12.72552 -12.62636 -12.51404 -12.46848 -12.17985 -12.12381 -11.97855 -11.59153 -11.40055 -11.05468 -10.87829 -10.51940 -10.48519 -10.10453 -10.08675 -9.72611 -9.29078 -8.63308 -5.48780 0.08796 0.36207 1.39184 1.52672 1.62637 1.67193 2.05452 2.18675 2.52229 2.68287 2.86038 3.07272 3.19176 3.38742 3.46565 3.48652 3.56601 3.66627 3.84031 3.87569 3.96397 4.05785 4.12989 4.22957 4.34442 4.34916 4.44488 4.51256 4.59545 4.62584 4.64671 4.66090 4.69940 4.70377 4.76595 4.76925 4.85690 4.88682 4.94974 4.97460 5.08563 5.13469 5.40658 5.58835 5.92676 5.95095 6.20414 6.52470 6.67950 7.04164 7.23434 7.29898 8.23747 8.88397 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.002240 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.314758 B =12497.579033 C =12679.307272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.322 6.322 3 C 0.168 3.832 4 C -0.263 4.263 5 C 0.124 3.876 6 N -0.535 5.535 7 C 0.132 3.868 8 C -0.166 4.166 9 C -0.083 4.083 10 C 0.521 3.479 11 O -0.576 6.576 12 N -0.708 5.708 13 C 0.125 3.875 14 H 0.094 0.906 15 C 0.038 3.962 16 O -0.367 6.367 17 C 0.083 3.917 18 C 0.121 3.879 19 N -0.642 5.642 20 C -0.290 4.290 21 H 0.053 0.947 22 C -0.078 4.078 23 N -0.964 5.964 24 Si 1.097 2.903 25 H -0.267 1.267 26 H -0.263 1.263 27 H -0.302 1.302 28 C 0.087 3.913 29 C -0.113 4.113 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.118 0.882 33 H 0.163 0.837 34 H 0.182 0.818 35 H 0.175 0.825 36 H 0.124 0.876 37 H 0.138 0.862 38 H 0.418 0.582 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.248 0.752 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.094 0.906 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.700 18.810 11.250 32.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.233 6.233 3 C 0.114 3.886 4 C -0.284 4.284 5 C -0.032 4.032 6 N -0.247 5.247 7 C -0.023 4.023 8 C -0.169 4.169 9 C -0.123 4.123 10 C 0.309 3.691 11 O -0.455 6.455 12 N -0.361 5.361 13 C 0.019 3.981 14 H 0.112 0.888 15 C -0.039 4.039 16 O -0.284 6.284 17 C 0.041 3.959 18 C -0.004 4.004 19 N -0.372 5.372 20 C -0.417 4.417 21 H 0.071 0.929 22 C -0.271 4.271 23 N -0.609 5.609 24 Si 0.922 3.078 25 H -0.193 1.193 26 H -0.188 1.188 27 H -0.230 1.230 28 C -0.038 4.038 29 C -0.151 4.151 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.137 0.863 33 H 0.181 0.819 34 H 0.199 0.801 35 H 0.192 0.808 36 H 0.142 0.858 37 H 0.156 0.844 38 H 0.256 0.744 39 H 0.096 0.904 40 H 0.117 0.883 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.113 0.887 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.841 18.497 11.497 32.291 hybrid contribution 0.636 -0.060 -1.329 1.474 sum -23.205 18.437 10.168 31.334 Atomic orbital electron populations 1.23411 0.75955 1.05848 1.02522 1.86032 1.23808 1.26097 1.87389 1.19390 0.92264 0.85442 0.91512 1.22471 1.02794 0.92565 1.10546 1.23035 0.90051 0.98294 0.91821 1.67742 1.08208 1.32566 1.16231 1.22843 1.01109 0.86204 0.92190 1.19933 0.91366 0.96881 1.08757 1.20451 1.02863 0.95881 0.93069 1.21041 0.76802 0.79349 0.91933 1.90706 1.49194 1.57777 1.47825 1.45813 1.53582 1.28340 1.08403 1.22343 0.93910 0.96819 0.85043 0.88757 1.24060 0.96431 0.91966 0.91459 1.88785 1.21672 1.73320 1.44665 1.23114 0.81940 0.94562 0.96239 1.22575 0.91241 0.93280 0.93353 1.45946 1.04601 1.54066 1.32602 1.19933 0.82856 1.17184 1.21737 0.92916 1.27016 1.03158 0.98002 0.98904 1.71010 0.98674 1.48971 1.42208 0.83355 0.72700 0.75071 0.76627 1.19260 1.18789 1.23042 1.23264 0.86676 0.96467 0.97419 1.22571 0.97312 0.94411 1.00805 0.90670 0.92048 0.86344 0.81921 0.80102 0.80835 0.85804 0.84413 0.74381 0.90400 0.88309 0.92217 0.93460 0.94269 0.93037 0.92246 0.88726 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.84 113.37 1.12 1.26 16 2 O -0.32 -5.35 9.77 -90.64 -0.89 -6.23 16 3 C 0.17 3.05 6.70 22.77 0.15 3.20 16 4 C -0.26 -3.90 9.11 22.45 0.20 -3.69 16 5 C 0.12 1.99 11.17 84.60 0.95 2.93 16 6 N -0.54 -11.01 10.36 -196.08 -2.03 -13.05 16 7 C 0.13 2.48 10.84 84.62 0.92 3.39 16 8 C -0.17 -3.03 4.40 -19.68 -0.09 -3.11 16 9 C -0.08 -1.13 5.60 29.10 0.16 -0.97 16 10 C 0.52 10.67 7.82 87.66 0.69 11.35 16 11 O -0.58 -17.00 15.68 -3.03 -0.05 -17.05 16 12 N -0.71 -12.79 5.20 -435.92 -2.27 -15.06 16 13 C 0.13 2.94 3.51 46.39 0.16 3.10 16 14 H 0.09 2.51 7.54 -2.38 -0.02 2.49 16 15 C 0.04 0.95 7.43 72.69 0.54 1.49 16 16 O -0.37 -11.62 11.32 -148.98 -1.69 -13.30 16 17 C 0.08 2.79 1.66 -10.83 -0.02 2.78 16 18 C 0.12 4.79 8.20 83.40 0.68 5.48 16 19 N -0.64 -30.78 3.58 -739.22 -2.65 -33.43 16 20 C -0.29 -16.61 11.03 84.03 0.93 -15.68 16 21 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 22 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 23 N -0.96 -61.10 13.70 21.65 0.30 -60.81 16 24 Si 1.10 52.01 25.51 68.60 1.75 53.76 16 25 H -0.27 -11.38 6.97 99.48 0.69 -10.69 16 26 H -0.26 -11.54 5.65 99.48 0.56 -10.98 16 27 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 28 C 0.09 3.49 5.12 83.49 0.43 3.92 16 29 C -0.11 -3.11 6.20 31.39 0.19 -2.91 16 30 H 0.07 0.38 7.70 -2.38 -0.02 0.36 16 31 H 0.06 0.50 7.72 -2.39 -0.02 0.48 16 32 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.16 1.40 6.47 -2.91 -0.02 1.38 16 34 H 0.18 1.73 8.06 -2.91 -0.02 1.70 16 35 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.12 1.33 7.78 -2.38 -0.02 1.32 16 37 H 0.14 1.03 8.06 -2.39 -0.02 1.01 16 38 H 0.42 5.28 8.41 -92.70 -0.78 4.50 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.06 2.25 7.91 -2.39 -0.02 2.23 16 42 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.25 15.80 8.73 -92.70 -0.81 14.99 16 44 H 0.05 2.11 6.98 -2.39 -0.02 2.10 16 45 H 0.06 2.31 6.08 -2.39 -0.01 2.30 16 46 H 0.09 2.49 7.45 -2.39 -0.02 2.47 16 47 H 0.09 2.48 7.82 -2.38 -0.02 2.46 16 Total: -1.00 -80.40 384.37 -0.01 -80.41 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.03 Total: 16.34 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 7.48 Total: 8.42 kcal Atomic # 7 Polarization: -115.69 SS G_CDS: -6.65 Total: -122.34 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -2.62 Total: -36.58 kcal Atomic # 14 Polarization: 52.01 SS G_CDS: 1.75 Total: 53.76 kcal Total: -80.40 -0.01 -80.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053843497.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.278 kcal (2) G-P(sol) polarization free energy of solvation -80.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds