Wall clock time and date at job start Wed Apr 1 2020 05:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35911 * 117.00440 * 2 1 4 4 C 1.39146 * 120.47165 * 0.25040 * 3 2 1 5 5 C 1.38537 * 118.37079 * 180.26471 * 4 3 2 6 6 C 1.38248 * 119.22319 * 359.74883 * 5 4 3 7 7 N 1.31851 * 120.88756 * 359.97438 * 6 5 4 8 8 C 1.31834 * 121.77937 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.65836 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46869 * 90.00054 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 H 1.09005 * 110.97424 * 325.70725 * 13 12 10 15 15 C 1.55009 * 111.10671 * 89.85944 * 13 12 10 16 16 O 1.43867 * 105.17444 * 154.03465 * 15 13 12 17 17 C 1.42528 * 109.62698 * 335.69927 * 16 15 13 18 18 C 1.53264 * 115.54639 * 231.51491 * 17 16 15 19 19 N 1.47715 * 85.91523 * 219.83629 * 18 17 16 20 20 C 1.36939 * 134.43939 * 204.18168 * 19 18 17 21 21 H 1.07995 * 120.00408 * 179.97438 * 20 19 18 22 22 C 1.38814 * 119.99755 * 359.96356 * 20 19 18 23 23 N 1.31618 * 120.00124 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00168 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47063 * 59.99842 * 24 22 20 26 26 H 1.48498 * 109.47417 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46805 * 300.00060 * 24 22 20 28 28 C 1.47708 * 91.12380 * 24.15277 * 19 18 17 29 29 C 1.53834 * 108.39547 * 1.89341 * 17 16 15 30 30 H 1.09000 * 109.47035 * 300.00307 * 1 2 3 31 31 H 1.08999 * 109.46693 * 59.99844 * 1 2 3 32 32 H 1.09001 * 109.47616 * 179.97438 * 1 2 3 33 33 H 1.07993 * 120.81211 * 0.02562 * 4 3 2 34 34 H 1.08000 * 120.38452 * 179.73298 * 5 4 3 35 35 H 1.07996 * 119.55882 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47210 * 330.00348 * 9 8 7 37 37 H 1.08994 * 109.47551 * 210.00000 * 9 8 7 38 38 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 39 39 H 1.09006 * 110.30192 * 272.95367 * 15 13 12 40 40 H 1.08996 * 110.30604 * 35.10931 * 15 13 12 41 41 H 1.08997 * 113.79988 * 334.07716 * 18 17 16 42 42 H 1.08997 * 113.80247 * 105.58482 * 18 17 16 43 43 H 0.97005 * 120.00388 * 180.02562 * 23 22 20 44 44 H 1.09006 * 113.80173 * 221.60200 * 28 19 18 45 45 H 1.08994 * 113.91114 * 90.11516 * 28 19 18 46 46 H 1.08998 * 110.90579 * 262.75190 * 29 17 16 47 47 H 1.08999 * 110.95701 * 139.09346 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2980 2.3842 0.0052 5 6 1.9718 3.5946 -0.0006 6 6 3.3543 3.5975 -0.0061 7 7 4.0335 2.4674 -0.0053 8 6 3.4306 1.2950 0.0002 9 6 4.2542 0.0329 0.0003 10 6 4.5343 -0.3840 1.4211 11 8 4.1068 0.2782 2.3429 12 7 5.2547 -1.4961 1.6675 13 6 5.5219 -1.9047 3.0488 14 1 5.6441 -1.0361 3.6959 15 6 4.4080 -2.8434 3.5786 16 8 5.0377 -3.6350 4.6016 17 6 6.4424 -3.6915 4.3666 18 6 7.0545 -5.0965 4.3547 19 7 8.1901 -4.4931 5.0815 20 6 9.5132 -4.8139 5.2292 21 1 10.1560 -4.1903 5.8327 22 6 10.0282 -5.9408 4.6032 23 7 9.2449 -6.7006 3.8674 24 14 11.8328 -6.3788 4.8051 25 1 12.1307 -6.5995 6.2430 26 1 12.1300 -7.6174 4.0417 27 1 12.6725 -5.2672 4.2905 28 6 7.3275 -3.4048 5.5848 29 6 6.7617 -2.8394 3.1262 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 0.2185 2.3519 0.0098 34 1 1.4235 4.5250 -0.0011 35 1 3.8851 4.5380 -0.0111 36 1 5.1961 0.2137 -0.5178 37 1 3.7055 -0.7591 -0.5093 38 1 5.5964 -2.0259 0.9303 39 1 3.5908 -2.2593 4.0019 40 1 4.0405 -3.4842 2.7772 41 1 6.4946 -5.8253 4.9407 42 1 7.3112 -5.4560 3.3582 43 1 9.6047 -7.4883 3.4302 44 1 7.8005 -2.4230 5.5635 45 1 6.8484 -3.6260 6.5385 46 1 6.8357 -3.4625 2.2350 47 1 7.6750 -2.2632 3.2737 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053907368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:26 Heat of formation + Delta-G solvation = -14.778072 kcal Electronic energy + Delta-G solvation = -30216.686417 eV Core-core repulsion = 25981.365717 eV Total energy + Delta-G solvation = -4235.320700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.15648 -40.13008 -39.04357 -38.42137 -36.23627 -34.46181 -33.46198 -32.06576 -31.79500 -30.42716 -28.54401 -27.93427 -27.66183 -25.62212 -24.91668 -23.25304 -23.21482 -21.96780 -21.43108 -20.50789 -18.72016 -18.46838 -17.48608 -17.39355 -16.81031 -16.73790 -16.20192 -16.03184 -15.35131 -15.07422 -14.93225 -14.82955 -14.66463 -14.27309 -14.20056 -13.81140 -13.61199 -13.39821 -13.25241 -12.95217 -12.71284 -12.50065 -12.22212 -12.08444 -11.83224 -11.77573 -11.56726 -11.30899 -11.04667 -10.87436 -10.74502 -10.67415 -10.32114 -10.17188 -10.05619 -9.88642 -9.81753 -9.55491 -9.06635 -8.79197 -8.66295 -8.65412 -6.89631 -5.77364 -3.09770 0.77290 0.96207 2.61443 2.80075 3.00040 3.40161 3.44181 3.45367 3.54675 3.96852 4.24555 4.27202 4.36784 4.52254 4.60072 4.64244 4.72631 4.77376 4.84758 4.95645 5.07665 5.08628 5.09694 5.15909 5.20192 5.32751 5.38287 5.40840 5.47613 5.56251 5.66129 5.74941 5.94273 5.98785 6.09999 6.22008 6.30751 6.40384 6.52827 6.62757 6.72323 6.81962 7.06142 7.23187 7.45771 7.51644 7.70001 7.73543 7.96544 8.19245 9.04022 9.69750 10.58681 11.40009 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021626 B = 0.002058 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.450354 B =13600.703094 C =14081.488917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.093 3.907 4 C -0.165 4.165 5 C -0.134 4.134 6 C 0.063 3.937 7 N -0.438 5.438 8 C 0.127 3.873 9 C -0.087 4.087 10 C 0.525 3.475 11 O -0.534 6.534 12 N -0.716 5.716 13 C 0.110 3.890 14 H 0.104 0.896 15 C 0.045 3.955 16 O -0.366 6.366 17 C 0.055 3.945 18 C 0.166 3.834 19 N -0.605 5.605 20 C -0.220 4.220 21 H 0.081 0.919 22 C -0.008 4.008 23 N -0.921 5.921 24 Si 0.914 3.086 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.117 3.883 29 C -0.117 4.117 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.104 0.896 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.159 0.841 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.404 0.596 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.035 0.965 42 H 0.076 0.924 43 H 0.255 0.745 44 H 0.047 0.953 45 H 0.043 0.957 46 H 0.084 0.916 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.847 17.469 -13.381 28.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.045 3.955 4 C -0.192 4.192 5 C -0.154 4.154 6 C -0.094 4.094 7 N -0.147 5.147 8 C -0.013 4.013 9 C -0.127 4.127 10 C 0.311 3.689 11 O -0.410 6.410 12 N -0.369 5.369 13 C 0.004 3.996 14 H 0.121 0.879 15 C -0.034 4.034 16 O -0.283 6.283 17 C 0.014 3.986 18 C 0.040 3.960 19 N -0.333 5.333 20 C -0.347 4.347 21 H 0.099 0.901 22 C -0.204 4.204 23 N -0.568 5.568 24 Si 0.744 3.256 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.211 1.211 28 C -0.009 4.009 29 C -0.155 4.155 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.123 0.877 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.176 0.824 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.239 0.761 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.052 0.948 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.102 0.898 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.001 17.478 -12.593 28.072 hybrid contribution -0.070 -0.353 -0.263 0.446 sum -18.070 17.124 -12.856 28.019 Atomic orbital electron populations 1.23125 0.78036 1.04497 1.01312 1.86102 1.21623 1.25871 1.88213 1.19833 0.93046 0.85249 0.97382 1.21662 1.00740 0.92130 1.04657 1.21980 0.95771 0.98231 0.99386 1.22604 0.91443 0.96297 0.99013 1.67447 1.40029 0.97514 1.09704 1.19894 0.87695 0.93365 1.00385 1.20447 1.01912 0.94707 0.95684 1.20302 0.77673 0.80149 0.90822 1.90716 1.50687 1.53366 1.46239 1.45822 1.55417 1.27124 1.08528 1.22784 0.95357 0.98330 0.83098 0.87851 1.23651 0.95619 0.92451 0.91644 1.88395 1.20075 1.71253 1.48621 1.24219 0.79319 0.99807 0.95207 1.22506 0.85064 0.90201 0.98202 1.45674 1.04026 1.27125 1.56519 1.18931 0.82201 1.07431 1.26167 0.90140 1.24792 0.98189 0.97345 1.00117 1.69809 1.34212 1.17094 1.35712 0.86178 0.84309 0.77570 0.77572 1.21157 1.21558 1.21060 1.22829 0.89959 0.93192 0.94927 1.22862 0.97286 0.96821 0.98544 0.92465 0.92606 0.87742 0.84304 0.84488 0.82382 0.86767 0.86753 0.76146 0.90075 0.92292 0.94758 0.90537 0.93550 0.93488 0.93966 0.89794 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.83 101.05 0.99 1.14 16 2 O -0.31 -2.94 9.54 -19.46 -0.19 -3.13 16 3 C 0.09 0.98 6.67 -39.07 -0.26 0.72 16 4 C -0.17 -1.38 9.14 -39.13 -0.36 -1.74 16 5 C -0.13 -1.03 10.11 -39.47 -0.40 -1.43 16 6 C 0.06 0.59 11.18 -17.54 -0.20 0.40 16 7 N -0.44 -5.31 10.27 -9.36 -0.10 -5.41 16 8 C 0.13 1.49 5.29 -82.42 -0.44 1.06 16 9 C -0.09 -0.88 5.78 -29.03 -0.17 -1.05 16 10 C 0.52 6.90 7.82 -10.98 -0.09 6.81 16 11 O -0.53 -9.20 15.73 5.55 0.09 -9.11 16 12 N -0.72 -8.53 5.22 -51.52 -0.27 -8.80 16 13 C 0.11 1.61 3.42 -65.57 -0.22 1.38 16 14 H 0.10 1.67 7.64 -51.93 -0.40 1.27 16 15 C 0.04 0.69 7.49 38.22 0.29 0.98 16 16 O -0.37 -6.98 11.14 -35.23 -0.39 -7.38 16 17 C 0.06 1.10 1.68 -90.02 -0.15 0.95 16 18 C 0.17 4.02 7.01 -3.25 -0.02 4.00 16 19 N -0.61 -15.76 3.67 -181.28 -0.67 -16.42 16 20 C -0.22 -6.18 10.70 -15.06 -0.16 -6.34 16 21 H 0.08 2.18 7.83 -52.49 -0.41 1.76 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 23 N -0.92 -27.14 11.39 55.49 0.63 -26.50 16 24 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 C 0.12 2.55 8.37 -3.24 -0.03 2.52 16 29 C -0.12 -1.95 5.97 -24.99 -0.15 -2.09 16 30 H 0.06 0.30 7.69 -51.93 -0.40 -0.10 16 31 H 0.06 0.22 7.71 -51.93 -0.40 -0.18 16 32 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.14 0.77 6.45 -52.49 -0.34 0.43 16 34 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.11 0.91 7.51 -51.93 -0.39 0.52 16 38 H 0.40 3.70 8.53 -40.82 -0.35 3.35 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 1.97 7.05 -51.93 -0.37 1.61 16 43 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.05 0.95 7.98 -51.93 -0.41 0.54 16 45 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.08 1.33 7.86 -51.93 -0.41 0.93 16 47 H 0.09 1.57 7.83 -51.93 -0.41 1.17 16 LS Contribution 391.16 15.07 5.89 5.89 Total: -1.00 -36.19 391.16 -8.27 -44.45 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.80 Total: 2.36 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -1.46 Total: 6.98 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.40 Total: -57.14 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.49 Total: -19.62 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.19 -8.27 -44.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053907368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.677 kcal (2) G-P(sol) polarization free energy of solvation -36.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds