Wall clock time and date at job start Wed Apr 1 2020 05:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35911 * 117.00440 * 2 1 4 4 C 1.39146 * 120.47165 * 0.25040 * 3 2 1 5 5 C 1.38537 * 118.37079 * 180.26471 * 4 3 2 6 6 C 1.38248 * 119.22319 * 359.74883 * 5 4 3 7 7 N 1.31851 * 120.88756 * 359.97438 * 6 5 4 8 8 C 1.31834 * 121.77937 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.65836 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46869 * 90.00054 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72354 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 H 1.09005 * 110.97424 * 325.70725 * 13 12 10 15 15 C 1.55009 * 111.10671 * 89.85944 * 13 12 10 16 16 O 1.43867 * 105.17444 * 154.03465 * 15 13 12 17 17 C 1.42528 * 109.62698 * 335.69927 * 16 15 13 18 18 C 1.53264 * 115.54639 * 231.51491 * 17 16 15 19 19 N 1.47715 * 85.91523 * 219.83629 * 18 17 16 20 20 C 1.36939 * 134.43939 * 204.18168 * 19 18 17 21 21 H 1.07995 * 120.00408 * 179.97438 * 20 19 18 22 22 C 1.38814 * 119.99755 * 359.96356 * 20 19 18 23 23 N 1.31618 * 120.00124 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00168 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47063 * 59.99842 * 24 22 20 26 26 H 1.48498 * 109.47417 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46805 * 300.00060 * 24 22 20 28 28 C 1.47708 * 91.12380 * 24.15277 * 19 18 17 29 29 C 1.53834 * 108.39547 * 1.89341 * 17 16 15 30 30 H 1.09000 * 109.47035 * 300.00307 * 1 2 3 31 31 H 1.08999 * 109.46693 * 59.99844 * 1 2 3 32 32 H 1.09001 * 109.47616 * 179.97438 * 1 2 3 33 33 H 1.07993 * 120.81211 * 0.02562 * 4 3 2 34 34 H 1.08000 * 120.38452 * 179.73298 * 5 4 3 35 35 H 1.07996 * 119.55882 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47210 * 330.00348 * 9 8 7 37 37 H 1.08994 * 109.47551 * 210.00000 * 9 8 7 38 38 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 39 39 H 1.09006 * 110.30192 * 272.95367 * 15 13 12 40 40 H 1.08996 * 110.30604 * 35.10931 * 15 13 12 41 41 H 1.08997 * 113.79988 * 334.07716 * 18 17 16 42 42 H 1.08997 * 113.80247 * 105.58482 * 18 17 16 43 43 H 0.97005 * 120.00388 * 180.02562 * 23 22 20 44 44 H 1.09006 * 113.80173 * 221.60200 * 28 19 18 45 45 H 1.08994 * 113.91114 * 90.11516 * 28 19 18 46 46 H 1.08998 * 110.90579 * 262.75190 * 29 17 16 47 47 H 1.08999 * 110.95701 * 139.09346 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2980 2.3842 0.0052 5 6 1.9718 3.5946 -0.0006 6 6 3.3543 3.5975 -0.0061 7 7 4.0335 2.4674 -0.0053 8 6 3.4306 1.2950 0.0002 9 6 4.2542 0.0329 0.0003 10 6 4.5343 -0.3840 1.4211 11 8 4.1068 0.2782 2.3429 12 7 5.2547 -1.4961 1.6675 13 6 5.5219 -1.9047 3.0488 14 1 5.6441 -1.0361 3.6959 15 6 4.4080 -2.8434 3.5786 16 8 5.0377 -3.6350 4.6016 17 6 6.4424 -3.6915 4.3666 18 6 7.0545 -5.0965 4.3547 19 7 8.1901 -4.4931 5.0815 20 6 9.5132 -4.8139 5.2292 21 1 10.1560 -4.1903 5.8327 22 6 10.0282 -5.9408 4.6032 23 7 9.2449 -6.7006 3.8674 24 14 11.8328 -6.3788 4.8051 25 1 12.1307 -6.5995 6.2430 26 1 12.1300 -7.6174 4.0417 27 1 12.6725 -5.2672 4.2905 28 6 7.3275 -3.4048 5.5848 29 6 6.7617 -2.8394 3.1262 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 0.2185 2.3519 0.0098 34 1 1.4235 4.5250 -0.0011 35 1 3.8851 4.5380 -0.0111 36 1 5.1961 0.2137 -0.5178 37 1 3.7055 -0.7591 -0.5093 38 1 5.5964 -2.0259 0.9303 39 1 3.5908 -2.2593 4.0019 40 1 4.0405 -3.4842 2.7772 41 1 6.4946 -5.8253 4.9407 42 1 7.3112 -5.4560 3.3582 43 1 9.6047 -7.4883 3.4302 44 1 7.8005 -2.4230 5.5635 45 1 6.8484 -3.6260 6.5385 46 1 6.8357 -3.4625 2.2350 47 1 7.6750 -2.2632 3.2737 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053907368.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:25 Heat of formation + Delta-G solvation = -41.673774 kcal Electronic energy + Delta-G solvation = -30217.852702 eV Core-core repulsion = 25981.365717 eV Total energy + Delta-G solvation = -4236.486985 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.89500 -41.48158 -40.25236 -39.05789 -37.90543 -35.70090 -34.18695 -34.13347 -32.50989 -31.61737 -30.00776 -28.95394 -28.27265 -27.30195 -26.77779 -24.11912 -23.83562 -23.81567 -22.53261 -21.59070 -20.38201 -19.07221 -18.79653 -18.37911 -18.14195 -17.80212 -17.09388 -17.02242 -16.69578 -16.57093 -16.34993 -16.05043 -15.60055 -15.38264 -15.28208 -14.84002 -14.71529 -14.58239 -14.35804 -14.12611 -14.03027 -13.86660 -13.40370 -13.15495 -12.97597 -12.85034 -12.81507 -12.56410 -12.54820 -12.37196 -12.33479 -12.29441 -11.96707 -11.78814 -11.57152 -11.10970 -10.86920 -10.63070 -10.56218 -10.38300 -10.10282 -9.32377 -8.97701 -7.91460 -5.26334 0.11130 0.31108 1.47166 1.50697 1.56754 1.60251 2.00346 2.25688 2.44564 2.80040 2.91399 3.23603 3.30426 3.38740 3.47303 3.64033 3.68194 3.72414 3.83996 3.89205 4.01966 4.08646 4.13915 4.28843 4.36040 4.37917 4.48589 4.51953 4.64052 4.67625 4.72178 4.74289 4.80486 4.82385 4.89279 4.94582 5.01390 5.05836 5.13277 5.13510 5.21288 5.42021 5.47751 5.51727 5.87393 6.16850 6.23371 6.50802 6.89621 7.01933 7.20771 7.57557 8.52158 9.25583 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021626 B = 0.002058 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.450354 B =13600.703094 C =14081.488917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.079 3.921 4 C -0.170 4.170 5 C -0.127 4.127 6 C 0.045 3.955 7 N -0.470 5.470 8 C 0.094 3.906 9 C -0.080 4.080 10 C 0.526 3.474 11 O -0.577 6.577 12 N -0.704 5.704 13 C 0.127 3.873 14 H 0.091 0.909 15 C 0.043 3.957 16 O -0.381 6.381 17 C 0.078 3.922 18 C 0.163 3.837 19 N -0.629 5.629 20 C -0.236 4.236 21 H 0.086 0.914 22 C -0.064 4.064 23 N -0.951 5.951 24 Si 0.982 3.018 25 H -0.280 1.280 26 H -0.293 1.293 27 H -0.273 1.273 28 C 0.114 3.886 29 C -0.108 4.108 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.166 0.834 34 H 0.172 0.828 35 H 0.179 0.821 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.419 0.581 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.010 0.990 42 H 0.057 0.943 43 H 0.251 0.749 44 H 0.065 0.935 45 H 0.041 0.959 46 H 0.093 0.907 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.723 19.043 -14.546 31.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.236 6.236 3 C 0.031 3.969 4 C -0.196 4.196 5 C -0.146 4.146 6 C -0.112 4.112 7 N -0.179 5.179 8 C -0.046 4.046 9 C -0.120 4.120 10 C 0.314 3.686 11 O -0.456 6.456 12 N -0.358 5.358 13 C 0.020 3.980 14 H 0.109 0.891 15 C -0.034 4.034 16 O -0.298 6.298 17 C 0.037 3.963 18 C 0.037 3.963 19 N -0.357 5.357 20 C -0.364 4.364 21 H 0.104 0.896 22 C -0.257 4.257 23 N -0.600 5.600 24 Si 0.810 3.190 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.199 1.199 28 C -0.011 4.011 29 C -0.146 4.146 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.136 0.864 33 H 0.184 0.816 34 H 0.189 0.811 35 H 0.196 0.804 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.257 0.743 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.028 0.972 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.083 0.917 45 H 0.059 0.941 46 H 0.112 0.888 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.888 19.058 -13.775 30.161 hybrid contribution 0.064 -0.788 0.131 0.801 sum -18.824 18.270 -13.643 29.568 Atomic orbital electron populations 1.23394 0.76227 1.05833 1.02342 1.86062 1.23569 1.25793 1.88209 1.19996 0.93085 0.86243 0.97568 1.22070 1.02162 0.91684 1.03685 1.22376 0.95317 0.99503 0.97426 1.23106 0.92673 0.96440 0.98950 1.67409 1.41302 0.98393 1.10806 1.20120 0.88701 0.93670 1.02069 1.20465 1.02913 0.95079 0.93521 1.20841 0.76630 0.79450 0.91701 1.90692 1.52438 1.54688 1.47773 1.45676 1.55100 1.27131 1.07846 1.22419 0.93878 0.97199 0.84473 0.89081 1.23832 0.95659 0.92551 0.91384 1.88369 1.19417 1.72022 1.50005 1.23745 0.79844 0.97032 0.95691 1.22396 0.85229 0.92162 0.96518 1.45972 1.04069 1.28399 1.57263 1.19331 0.83490 1.07641 1.25904 0.89642 1.25652 1.02491 0.97407 1.00136 1.69994 1.35931 1.17360 1.36678 0.85106 0.79277 0.77170 0.77471 1.20632 1.21881 1.19853 1.22958 0.89780 0.92837 0.95567 1.22747 0.97931 0.96662 0.97260 0.92153 0.90775 0.86387 0.81629 0.81056 0.80392 0.85276 0.84701 0.74272 0.89443 0.90575 0.97177 0.92453 0.94041 0.91697 0.94134 0.88827 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.83 113.37 1.11 1.27 16 2 O -0.32 -5.78 9.54 -92.55 -0.88 -6.67 16 3 C 0.08 1.57 6.67 22.60 0.15 1.72 16 4 C -0.17 -2.48 9.14 22.56 0.21 -2.28 16 5 C -0.13 -1.66 10.11 22.34 0.23 -1.44 16 6 C 0.05 0.80 11.18 84.69 0.95 1.74 16 7 N -0.47 -11.14 10.27 -183.51 -1.88 -13.03 16 8 C 0.09 2.14 5.29 42.67 0.23 2.37 16 9 C -0.08 -1.52 5.78 29.10 0.17 -1.36 16 10 C 0.53 13.30 7.82 87.66 0.69 13.99 16 11 O -0.58 -19.71 15.73 -3.04 -0.05 -19.75 16 12 N -0.70 -15.68 5.22 -435.30 -2.27 -17.96 16 13 C 0.13 3.56 3.42 46.52 0.16 3.72 16 14 H 0.09 2.87 7.64 -2.38 -0.02 2.85 16 15 C 0.04 1.28 7.49 72.67 0.54 1.83 16 16 O -0.38 -14.32 11.14 -148.98 -1.66 -15.98 16 17 C 0.08 3.10 1.68 -10.29 -0.02 3.08 16 18 C 0.16 8.11 7.01 86.23 0.60 8.71 16 19 N -0.63 -33.20 3.67 -732.76 -2.69 -35.89 16 20 C -0.24 -13.35 10.70 84.03 0.90 -12.45 16 21 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 22 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 23 N -0.95 -57.09 11.39 21.65 0.25 -56.85 16 24 Si 0.98 45.56 29.55 68.60 2.03 47.59 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 28 C 0.11 4.96 8.37 86.24 0.72 5.68 16 29 C -0.11 -3.49 5.97 31.72 0.19 -3.30 16 30 H 0.06 0.51 7.69 -2.39 -0.02 0.49 16 31 H 0.07 0.40 7.71 -2.39 -0.02 0.38 16 32 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.17 1.35 6.45 -2.91 -0.02 1.33 16 34 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 35 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.13 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.14 1.93 7.51 -2.39 -0.02 1.91 16 38 H 0.42 6.79 8.53 -92.71 -0.79 6.00 16 39 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 40 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 41 H 0.01 0.55 8.14 -2.39 -0.02 0.54 16 42 H 0.06 3.05 7.05 -2.39 -0.02 3.03 16 43 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 44 H 0.06 2.58 7.98 -2.38 -0.02 2.57 16 45 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.09 2.87 7.86 -2.39 -0.02 2.85 16 47 H 0.09 2.93 7.83 -2.39 -0.02 2.91 16 Total: -1.00 -79.78 391.16 0.34 -79.44 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.21 Total: 18.96 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 7.29 Total: 20.13 kcal Atomic # 7 Polarization: -117.12 SS G_CDS: -6.60 Total: -123.72 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -2.59 Total: -42.40 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -79.78 0.34 -79.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053907368.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.767 kcal (2) G-P(sol) polarization free energy of solvation -79.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds