Wall clock time and date at job start Wed Apr 1 2020 05:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35917 * 116.99660 * 2 1 4 4 C 1.39134 * 120.47408 * 0.20144 * 3 2 1 5 5 C 1.38538 * 118.37428 * 180.27054 * 4 3 2 6 6 C 1.38255 * 119.21856 * 359.74925 * 5 4 3 7 7 N 1.31849 * 120.88744 * 0.02562 * 6 5 4 8 8 C 1.31837 * 121.78167 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.65917 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.46758 * 89.99602 * 9 8 7 11 11 O 1.21282 * 120.00427 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99484 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99647 * 179.97438 * 12 10 9 14 14 H 1.08999 * 110.77267 * 31.47334 * 13 12 10 15 15 C 1.55056 * 111.04946 * 267.81061 * 13 12 10 16 16 O 1.44604 * 103.66832 * 205.24216 * 15 13 12 17 17 C 1.42834 * 106.73730 * 39.09251 * 16 15 13 18 18 C 1.52649 * 115.96943 * 202.46991 * 17 16 15 19 19 N 1.47226 * 87.78450 * 218.40508 * 18 17 16 20 20 C 1.36927 * 135.97019 * 206.37798 * 19 18 17 21 21 H 1.08006 * 120.00179 * 6.48240 * 20 19 18 22 22 C 1.38815 * 120.00379 * 186.48545 * 20 19 18 23 23 N 1.31623 * 119.99457 * 6.41318 * 22 20 19 24 24 Si 1.86799 * 120.00066 * 186.41286 * 22 20 19 25 25 H 1.48494 * 109.47199 * 265.01504 * 24 22 20 26 26 H 1.48494 * 109.47283 * 25.02312 * 24 22 20 27 27 H 1.48503 * 109.46714 * 145.01728 * 24 22 20 28 28 C 1.47220 * 88.06380 * 26.63410 * 19 18 17 29 29 C 1.53333 * 108.32566 * 334.30051 * 17 16 15 30 30 H 1.09002 * 109.46997 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47562 * 300.00268 * 1 2 3 32 32 H 1.09001 * 109.47337 * 60.00916 * 1 2 3 33 33 H 1.08000 * 120.81404 * 0.02562 * 4 3 2 34 34 H 1.08000 * 120.39331 * 179.77571 * 5 4 3 35 35 H 1.08003 * 119.55574 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.46988 * 329.99842 * 9 8 7 37 37 H 1.08997 * 109.47236 * 209.99312 * 9 8 7 38 38 H 0.96997 * 120.00085 * 359.97438 * 12 10 9 39 39 H 1.09001 * 110.58601 * 323.78818 * 15 13 12 40 40 H 1.09002 * 110.58703 * 86.69894 * 15 13 12 41 41 H 1.09005 * 113.49880 * 103.68011 * 18 17 16 42 42 H 1.08993 * 113.56001 * 333.14639 * 18 17 16 43 43 H 0.96996 * 119.99426 * 180.02562 * 23 22 20 44 44 H 1.08998 * 113.49939 * 88.09171 * 28 19 18 45 45 H 1.09002 * 113.50289 * 218.63708 * 28 19 18 46 46 H 1.09004 * 110.55634 * 120.19461 * 29 17 16 47 47 H 1.09002 * 110.56452 * 243.04112 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2978 2.3841 0.0042 5 6 1.9714 3.5947 -0.0017 6 6 3.3540 3.5976 -0.0063 7 7 4.0333 2.4676 -0.0055 8 6 3.4305 1.2951 0.0000 9 6 4.2542 0.0331 0.0000 10 6 4.5346 -0.3836 1.4208 11 8 4.1072 0.2786 2.3427 12 7 5.2603 -1.4924 1.6671 13 6 5.5334 -1.8972 3.0483 14 1 4.7131 -1.6081 3.7052 15 6 6.8763 -1.3041 3.5474 16 8 7.2911 -2.2225 4.5844 17 6 6.9620 -3.5350 4.1271 18 6 6.8034 -4.5997 5.2095 19 7 7.4615 -5.5467 4.2941 20 6 7.4512 -6.9029 4.1063 21 1 6.7620 -7.5201 4.6637 22 6 8.3264 -7.4848 3.1995 23 7 9.2503 -6.7526 2.6141 24 14 8.1931 -9.3069 2.8102 25 1 9.1368 -10.0669 3.6687 26 1 6.8058 -9.7684 3.0703 27 1 8.5306 -9.5339 1.3820 28 6 8.1405 -4.3973 3.6733 29 6 5.7987 -3.4222 3.1346 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 0.2183 2.3518 0.0080 34 1 1.4231 4.5251 -0.0023 35 1 3.8847 4.5383 -0.0113 36 1 5.1960 0.2140 -0.5182 37 1 3.7054 -0.7590 -0.5094 38 1 5.6018 -2.0222 0.9298 39 1 7.6086 -1.2811 2.7403 40 1 6.7253 -0.3056 3.9577 41 1 5.7645 -4.8518 5.4223 42 1 7.3807 -4.3940 6.1108 43 1 9.8617 -7.1591 1.9802 44 1 9.0818 -4.1357 4.1565 45 1 8.2299 -4.4785 2.5900 46 1 6.0874 -3.8164 2.1602 47 1 4.9196 -3.9430 3.5142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053907369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:30 Heat of formation + Delta-G solvation = -11.749324 kcal Electronic energy + Delta-G solvation = -30228.172431 eV Core-core repulsion = 25992.983067 eV Total energy + Delta-G solvation = -4235.189363 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.14317 -40.18021 -39.08296 -38.40969 -36.34082 -34.44341 -33.44656 -32.12363 -31.78216 -30.41779 -28.54233 -27.93149 -27.64896 -25.75542 -24.75192 -23.23315 -23.20208 -22.11550 -21.35849 -20.50287 -18.80810 -18.45536 -17.48245 -17.36865 -16.77997 -16.71482 -16.17171 -15.98890 -15.27753 -15.13564 -15.02525 -14.82229 -14.67107 -14.26252 -14.15529 -13.85098 -13.67436 -13.42406 -13.19322 -12.84405 -12.64018 -12.57931 -12.29590 -12.13632 -11.82021 -11.76114 -11.57833 -11.36803 -10.99045 -10.94211 -10.77853 -10.62703 -10.40478 -10.15081 -10.09317 -9.87408 -9.80297 -9.52813 -9.03216 -8.80680 -8.68051 -8.64387 -6.93171 -5.82049 -3.13471 0.78461 0.97362 2.63447 2.81645 3.03247 3.36852 3.41911 3.44184 3.56310 3.98374 4.26413 4.27688 4.37798 4.51957 4.61809 4.68134 4.73947 4.78464 4.86787 4.96637 5.04377 5.09069 5.10667 5.17233 5.21330 5.34894 5.41537 5.41824 5.49704 5.56807 5.67327 5.76113 5.96091 5.98908 6.10936 6.18411 6.30399 6.42441 6.50801 6.62469 6.65559 6.83372 6.98463 7.14498 7.44984 7.48458 7.62836 7.71116 7.91782 8.21402 8.99322 9.65495 10.59579 11.36737 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.002168 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.924996 B =12909.801654 C =13610.089178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.093 3.907 4 C -0.166 4.166 5 C -0.134 4.134 6 C 0.063 3.937 7 N -0.438 5.438 8 C 0.128 3.872 9 C -0.088 4.088 10 C 0.525 3.475 11 O -0.536 6.536 12 N -0.717 5.717 13 C 0.111 3.889 14 H 0.103 0.897 15 C 0.041 3.959 16 O -0.359 6.359 17 C 0.045 3.955 18 C 0.126 3.874 19 N -0.602 5.602 20 C -0.216 4.216 21 H 0.083 0.917 22 C -0.007 4.007 23 N -0.918 5.918 24 Si 0.914 3.086 25 H -0.288 1.288 26 H -0.279 1.279 27 H -0.289 1.289 28 C 0.156 3.844 29 C -0.114 4.114 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.159 0.841 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.404 0.596 39 H 0.062 0.938 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.254 0.746 44 H 0.037 0.963 45 H 0.062 0.938 46 H 0.086 0.914 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.295 19.380 -9.529 27.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.045 3.955 4 C -0.192 4.192 5 C -0.154 4.154 6 C -0.094 4.094 7 N -0.147 5.147 8 C -0.013 4.013 9 C -0.128 4.128 10 C 0.311 3.689 11 O -0.412 6.412 12 N -0.369 5.369 13 C 0.005 3.995 14 H 0.121 0.879 15 C -0.037 4.037 16 O -0.276 6.276 17 C 0.004 3.996 18 C 0.000 4.000 19 N -0.330 5.330 20 C -0.344 4.344 21 H 0.101 0.899 22 C -0.204 4.204 23 N -0.565 5.565 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.205 1.205 27 H -0.216 1.216 28 C 0.030 3.970 29 C -0.152 4.152 30 H 0.122 0.878 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.176 0.824 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.239 0.761 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.080 0.920 46 H 0.105 0.895 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.426 19.414 -8.799 26.910 hybrid contribution -0.970 -1.086 -0.652 1.596 sum -17.396 18.329 -9.451 26.979 Atomic orbital electron populations 1.23124 0.78054 1.04495 1.01291 1.86112 1.21610 1.25860 1.88201 1.19840 0.93066 0.85250 0.97374 1.21658 1.00733 0.92133 1.04678 1.21979 0.95778 0.98212 0.99431 1.22604 0.91434 0.96299 0.99033 1.67447 1.40020 0.97502 1.09715 1.19901 0.87696 0.93367 1.00316 1.20453 1.01934 0.94691 0.95733 1.20294 0.77532 0.80273 0.90796 1.90708 1.51276 1.52991 1.46237 1.45907 1.54974 1.27452 1.08613 1.22667 0.98701 0.95030 0.83063 0.87929 1.23835 0.94038 0.94155 0.91674 1.88779 1.82626 1.15930 1.40278 1.23801 0.96873 0.82269 0.96685 1.22435 0.97071 0.87291 0.93230 1.45413 1.50881 1.01351 1.35353 1.18905 1.15815 0.79527 1.20108 0.89915 1.24846 0.97049 0.98148 1.00377 1.69865 1.19995 1.34794 1.31806 0.86082 0.77642 0.84428 0.77499 1.21566 1.20479 1.21573 1.22389 0.92345 0.83451 0.98795 1.22583 0.98601 0.93202 1.00814 0.87756 0.92486 0.92599 0.84319 0.84502 0.82386 0.86733 0.86750 0.76070 0.91987 0.89249 0.93610 0.94072 0.93571 0.94541 0.92016 0.89528 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.83 101.05 0.99 1.14 16 2 O -0.31 -3.04 9.54 -19.48 -0.19 -3.23 16 3 C 0.09 1.00 6.67 -39.07 -0.26 0.73 16 4 C -0.17 -1.41 9.14 -39.14 -0.36 -1.76 16 5 C -0.13 -1.04 10.11 -39.46 -0.40 -1.44 16 6 C 0.06 0.60 11.18 -17.54 -0.20 0.40 16 7 N -0.44 -5.33 10.27 -9.35 -0.10 -5.42 16 8 C 0.13 1.52 5.29 -82.42 -0.44 1.09 16 9 C -0.09 -0.91 5.78 -29.03 -0.17 -1.08 16 10 C 0.53 6.99 7.82 -10.98 -0.09 6.90 16 11 O -0.54 -9.22 15.68 5.56 0.09 -9.14 16 12 N -0.72 -8.75 5.20 -51.72 -0.27 -9.02 16 13 C 0.11 1.62 3.51 -65.77 -0.23 1.39 16 14 H 0.10 1.61 7.54 -51.93 -0.39 1.22 16 15 C 0.04 0.65 7.42 38.24 0.28 0.93 16 16 O -0.36 -6.83 11.32 -35.23 -0.40 -7.22 16 17 C 0.04 0.88 1.66 -90.67 -0.15 0.73 16 18 C 0.13 2.73 8.20 -8.04 -0.07 2.66 16 19 N -0.60 -15.56 3.73 -184.62 -0.69 -16.25 16 20 C -0.22 -6.02 10.73 -15.06 -0.16 -6.18 16 21 H 0.08 2.21 7.84 -52.48 -0.41 1.80 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 23 N -0.92 -27.08 11.82 55.49 0.66 -26.42 16 24 Si 0.91 21.82 29.56 -169.99 -5.02 16.80 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 C 0.16 3.75 6.73 -7.90 -0.05 3.70 16 29 C -0.11 -1.87 6.20 -25.49 -0.16 -2.03 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.31 7.69 -51.93 -0.40 -0.09 16 32 H 0.06 0.23 7.71 -51.93 -0.40 -0.17 16 33 H 0.14 0.79 6.45 -52.49 -0.34 0.45 16 34 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.16 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.11 0.97 7.51 -51.93 -0.39 0.58 16 38 H 0.40 3.98 8.41 -40.82 -0.34 3.64 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.05 0.91 7.91 -51.93 -0.41 0.50 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.06 1.56 7.40 -51.93 -0.38 1.18 16 46 H 0.09 1.43 7.45 -51.93 -0.39 1.04 16 47 H 0.08 1.36 7.82 -51.93 -0.41 0.96 16 LS Contribution 391.20 15.07 5.90 5.90 Total: -1.00 -36.04 391.20 -8.34 -44.38 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.78 Total: 2.75 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -1.54 Total: 6.88 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: -0.40 Total: -57.12 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.50 Total: -19.59 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.04 -8.34 -44.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053907369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.634 kcal (2) G-P(sol) polarization free energy of solvation -36.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds