Wall clock time and date at job start Wed Apr 1 2020 05:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35917 * 116.99660 * 2 1 4 4 C 1.39134 * 120.47408 * 0.20144 * 3 2 1 5 5 C 1.38538 * 118.37428 * 180.27054 * 4 3 2 6 6 C 1.38255 * 119.21856 * 359.74925 * 5 4 3 7 7 N 1.31849 * 120.88744 * 0.02562 * 6 5 4 8 8 C 1.31837 * 121.78167 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.65917 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.46758 * 89.99602 * 9 8 7 11 11 O 1.21282 * 120.00427 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99484 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99647 * 179.97438 * 12 10 9 14 14 H 1.08999 * 110.77267 * 31.47334 * 13 12 10 15 15 C 1.55056 * 111.04946 * 267.81061 * 13 12 10 16 16 O 1.44604 * 103.66832 * 205.24216 * 15 13 12 17 17 C 1.42834 * 106.73730 * 39.09251 * 16 15 13 18 18 C 1.52649 * 115.96943 * 202.46991 * 17 16 15 19 19 N 1.47226 * 87.78450 * 218.40508 * 18 17 16 20 20 C 1.36927 * 135.97019 * 206.37798 * 19 18 17 21 21 H 1.08006 * 120.00179 * 6.48240 * 20 19 18 22 22 C 1.38815 * 120.00379 * 186.48545 * 20 19 18 23 23 N 1.31623 * 119.99457 * 6.41318 * 22 20 19 24 24 Si 1.86799 * 120.00066 * 186.41286 * 22 20 19 25 25 H 1.48494 * 109.47199 * 265.01504 * 24 22 20 26 26 H 1.48494 * 109.47283 * 25.02312 * 24 22 20 27 27 H 1.48503 * 109.46714 * 145.01728 * 24 22 20 28 28 C 1.47220 * 88.06380 * 26.63410 * 19 18 17 29 29 C 1.53333 * 108.32566 * 334.30051 * 17 16 15 30 30 H 1.09002 * 109.46997 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47562 * 300.00268 * 1 2 3 32 32 H 1.09001 * 109.47337 * 60.00916 * 1 2 3 33 33 H 1.08000 * 120.81404 * 0.02562 * 4 3 2 34 34 H 1.08000 * 120.39331 * 179.77571 * 5 4 3 35 35 H 1.08003 * 119.55574 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.46988 * 329.99842 * 9 8 7 37 37 H 1.08997 * 109.47236 * 209.99312 * 9 8 7 38 38 H 0.96997 * 120.00085 * 359.97438 * 12 10 9 39 39 H 1.09001 * 110.58601 * 323.78818 * 15 13 12 40 40 H 1.09002 * 110.58703 * 86.69894 * 15 13 12 41 41 H 1.09005 * 113.49880 * 103.68011 * 18 17 16 42 42 H 1.08993 * 113.56001 * 333.14639 * 18 17 16 43 43 H 0.96996 * 119.99426 * 180.02562 * 23 22 20 44 44 H 1.08998 * 113.49939 * 88.09171 * 28 19 18 45 45 H 1.09002 * 113.50289 * 218.63708 * 28 19 18 46 46 H 1.09004 * 110.55634 * 120.19461 * 29 17 16 47 47 H 1.09002 * 110.56452 * 243.04112 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2978 2.3841 0.0042 5 6 1.9714 3.5947 -0.0017 6 6 3.3540 3.5976 -0.0063 7 7 4.0333 2.4676 -0.0055 8 6 3.4305 1.2951 0.0000 9 6 4.2542 0.0331 0.0000 10 6 4.5346 -0.3836 1.4208 11 8 4.1072 0.2786 2.3427 12 7 5.2603 -1.4924 1.6671 13 6 5.5334 -1.8972 3.0483 14 1 4.7131 -1.6081 3.7052 15 6 6.8763 -1.3041 3.5474 16 8 7.2911 -2.2225 4.5844 17 6 6.9620 -3.5350 4.1271 18 6 6.8034 -4.5997 5.2095 19 7 7.4615 -5.5467 4.2941 20 6 7.4512 -6.9029 4.1063 21 1 6.7620 -7.5201 4.6637 22 6 8.3264 -7.4848 3.1995 23 7 9.2503 -6.7526 2.6141 24 14 8.1931 -9.3069 2.8102 25 1 9.1368 -10.0669 3.6687 26 1 6.8058 -9.7684 3.0703 27 1 8.5306 -9.5339 1.3820 28 6 8.1405 -4.3973 3.6733 29 6 5.7987 -3.4222 3.1346 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 0.2183 2.3518 0.0080 34 1 1.4231 4.5251 -0.0023 35 1 3.8847 4.5383 -0.0113 36 1 5.1960 0.2140 -0.5182 37 1 3.7054 -0.7590 -0.5094 38 1 5.6018 -2.0222 0.9298 39 1 7.6086 -1.2811 2.7403 40 1 6.7253 -0.3056 3.9577 41 1 5.7645 -4.8518 5.4223 42 1 7.3807 -4.3940 6.1108 43 1 9.8617 -7.1591 1.9802 44 1 9.0818 -4.1357 4.1565 45 1 8.2299 -4.4785 2.5900 46 1 6.0874 -3.8164 2.1602 47 1 4.9196 -3.9430 3.5142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053907369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:29 Heat of formation + Delta-G solvation = -38.523889 kcal Electronic energy + Delta-G solvation = -30229.333463 eV Core-core repulsion = 25992.983067 eV Total energy + Delta-G solvation = -4236.350396 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.90913 -41.55246 -40.28499 -39.06119 -37.98968 -35.68974 -34.19570 -34.17091 -32.50820 -31.60812 -30.01985 -28.95888 -28.27758 -27.42372 -26.59264 -24.15768 -23.89922 -23.83437 -22.48875 -21.57706 -20.48657 -19.07423 -18.76306 -18.37800 -18.13604 -17.76003 -17.03598 -17.01844 -16.73872 -16.58748 -16.37359 -16.12236 -15.67274 -15.29677 -15.29145 -14.83599 -14.70818 -14.55208 -14.38884 -14.13869 -14.05803 -13.94922 -13.36083 -13.20737 -12.94980 -12.85455 -12.82282 -12.61902 -12.51654 -12.34868 -12.33623 -12.30340 -11.97764 -11.80693 -11.48702 -11.09316 -10.87755 -10.63095 -10.56191 -10.45238 -10.07889 -9.32499 -9.00174 -7.94645 -5.28654 0.11194 0.31206 1.47678 1.49302 1.59099 1.60453 2.02578 2.25646 2.43646 2.80684 2.93630 3.26143 3.30577 3.37590 3.55183 3.62460 3.65619 3.68297 3.83859 3.89727 4.07104 4.09645 4.14225 4.28704 4.35266 4.37131 4.48763 4.51664 4.65071 4.67200 4.71417 4.74584 4.80125 4.82132 4.91487 4.92560 4.96304 5.05867 5.06510 5.13359 5.15021 5.42943 5.43264 5.51909 5.83172 6.05063 6.23293 6.50430 6.86342 7.01989 7.20339 7.55020 8.54772 9.24505 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.002168 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.924996 B =12909.801654 C =13610.089178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.325 6.325 3 C 0.078 3.922 4 C -0.169 4.169 5 C -0.127 4.127 6 C 0.046 3.954 7 N -0.469 5.469 8 C 0.094 3.906 9 C -0.081 4.081 10 C 0.527 3.473 11 O -0.576 6.576 12 N -0.706 5.706 13 C 0.127 3.873 14 H 0.097 0.903 15 C 0.039 3.961 16 O -0.373 6.373 17 C 0.069 3.931 18 C 0.123 3.877 19 N -0.626 5.626 20 C -0.230 4.230 21 H 0.091 0.909 22 C -0.065 4.065 23 N -0.953 5.953 24 Si 0.984 3.016 25 H -0.289 1.289 26 H -0.263 1.263 27 H -0.291 1.291 28 C 0.155 3.845 29 C -0.105 4.105 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.166 0.834 34 H 0.172 0.828 35 H 0.180 0.820 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.417 0.583 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.068 0.932 42 H 0.037 0.963 43 H 0.251 0.749 44 H 0.008 0.992 45 H 0.042 0.958 46 H 0.087 0.913 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.698 19.989 -10.373 29.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.237 6.237 3 C 0.030 3.970 4 C -0.196 4.196 5 C -0.146 4.146 6 C -0.111 4.111 7 N -0.178 5.178 8 C -0.045 4.045 9 C -0.121 4.121 10 C 0.315 3.685 11 O -0.455 6.455 12 N -0.360 5.360 13 C 0.021 3.979 14 H 0.115 0.885 15 C -0.039 4.039 16 O -0.290 6.290 17 C 0.028 3.972 18 C -0.003 4.003 19 N -0.354 5.354 20 C -0.357 4.357 21 H 0.108 0.892 22 C -0.258 4.258 23 N -0.601 5.601 24 Si 0.811 3.189 25 H -0.217 1.217 26 H -0.188 1.188 27 H -0.218 1.218 28 C 0.028 3.972 29 C -0.143 4.143 30 H 0.135 0.865 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.184 0.816 34 H 0.190 0.810 35 H 0.197 0.803 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.255 0.745 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.026 0.974 45 H 0.061 0.939 46 H 0.106 0.894 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.848 20.019 -9.647 29.139 hybrid contribution -0.254 -1.161 -0.340 1.236 sum -19.101 18.857 -9.988 28.639 Atomic orbital electron populations 1.23390 0.76237 1.05784 1.02369 1.86070 1.23581 1.25867 1.88232 1.20008 0.93111 0.86238 0.97642 1.22067 1.02155 0.91669 1.03681 1.22382 0.95333 0.99473 0.97417 1.23120 0.92660 0.96443 0.98881 1.67409 1.41271 0.98351 1.10796 1.20104 0.88675 0.93650 1.02069 1.20465 1.02898 0.95075 0.93672 1.20799 0.76488 0.79591 0.91641 1.90683 1.52898 1.54256 1.47690 1.45789 1.54675 1.27478 1.08035 1.22349 0.97814 0.93422 0.84328 0.88481 1.24013 0.94764 0.93880 0.91261 1.88761 1.82954 1.15850 1.41434 1.23396 0.95620 0.82165 0.95992 1.22552 0.97709 0.86957 0.93049 1.45707 1.51396 1.01452 1.36818 1.19334 1.15703 0.80806 1.19862 0.89170 1.25728 0.96901 1.02640 1.00520 1.70049 1.20926 1.36598 1.32555 0.84988 0.78171 0.78950 0.76748 1.21658 1.18769 1.21766 1.22312 0.92952 0.84670 0.97233 1.22492 0.97336 0.94621 0.99851 0.86495 0.92080 0.90761 0.81631 0.81010 0.80309 0.85294 0.84973 0.74499 0.91264 0.88361 0.91397 0.94482 0.94060 0.97378 0.93931 0.89441 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.83 113.37 1.11 1.28 16 2 O -0.33 -6.07 9.54 -92.62 -0.88 -6.95 16 3 C 0.08 1.59 6.67 22.60 0.15 1.74 16 4 C -0.17 -2.52 9.14 22.56 0.21 -2.32 16 5 C -0.13 -1.67 10.11 22.35 0.23 -1.45 16 6 C 0.05 0.81 11.18 84.69 0.95 1.75 16 7 N -0.47 -11.18 10.27 -183.50 -1.88 -13.07 16 8 C 0.09 2.20 5.29 42.67 0.23 2.42 16 9 C -0.08 -1.62 5.78 29.10 0.17 -1.45 16 10 C 0.53 13.61 7.82 87.66 0.69 14.29 16 11 O -0.58 -19.67 15.68 -3.03 -0.05 -19.71 16 12 N -0.71 -16.38 5.20 -435.93 -2.27 -18.65 16 13 C 0.13 3.57 3.51 46.39 0.16 3.73 16 14 H 0.10 2.93 7.54 -2.39 -0.02 2.91 16 15 C 0.04 1.18 7.42 72.69 0.54 1.72 16 16 O -0.37 -14.03 11.32 -148.98 -1.69 -15.72 16 17 C 0.07 2.72 1.66 -10.82 -0.02 2.70 16 18 C 0.12 5.27 8.20 83.40 0.68 5.96 16 19 N -0.63 -32.67 3.73 -739.12 -2.75 -35.42 16 20 C -0.23 -12.79 10.73 84.04 0.90 -11.89 16 21 H 0.09 4.76 7.84 -2.91 -0.02 4.73 16 22 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 23 N -0.95 -57.42 11.82 21.65 0.26 -57.16 16 24 Si 0.98 44.94 29.56 68.60 2.03 46.97 16 25 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 26 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 27 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 28 C 0.15 7.64 6.73 83.49 0.56 8.20 16 29 C -0.10 -3.33 6.20 31.40 0.19 -3.14 16 30 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.54 7.69 -2.39 -0.02 0.52 16 32 H 0.07 0.44 7.71 -2.39 -0.02 0.42 16 33 H 0.17 1.39 6.45 -2.91 -0.02 1.37 16 34 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 35 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.13 2.08 7.51 -2.39 -0.02 2.06 16 38 H 0.42 7.58 8.41 -92.71 -0.78 6.80 16 39 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 41 H 0.07 2.61 7.91 -2.38 -0.02 2.59 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 44 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.04 2.23 7.40 -2.39 -0.02 2.21 16 46 H 0.09 2.80 7.45 -2.39 -0.02 2.78 16 47 H 0.09 2.83 7.82 -2.39 -0.02 2.81 16 Total: -1.00 -79.32 391.20 0.20 -79.12 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.22 Total: 20.23 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 7.22 Total: 20.37 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -6.65 Total: -124.30 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -2.62 Total: -42.39 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -79.32 0.20 -79.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053907369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.601 kcal (2) G-P(sol) polarization free energy of solvation -79.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds