Wall clock time and date at job start Wed Apr 1 2020 05:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35421 * 116.99884 * 2 1 4 4 N 1.32241 * 119.80246 * 0.29775 * 3 2 1 5 5 C 1.31879 * 121.79657 * 180.33269 * 4 3 2 6 6 C 1.38359 * 121.18916 * 359.65392 * 5 4 3 7 7 C 1.38335 * 119.45896 * 0.02562 * 6 5 4 8 8 C 1.39996 * 118.34750 * 359.97438 * 7 6 5 9 9 C 1.47516 * 120.59669 * 180.02562 * 8 7 6 10 10 O 1.21582 * 120.00472 * 126.37794 * 9 8 7 11 11 N 1.34791 * 119.99898 * 306.37712 * 9 8 7 12 12 C 1.46985 * 120.71882 * 354.08224 * 11 9 8 13 13 C 1.53155 * 108.43467 * 234.57027 * 12 11 9 14 14 C 1.52505 * 109.79912 * 305.46526 * 13 12 11 15 15 H 1.08995 * 108.93862 * 179.01634 * 14 13 12 16 16 O 1.42698 * 110.61564 * 298.71657 * 14 13 12 17 17 C 1.43072 * 113.87404 * 185.34453 * 16 14 13 18 18 C 1.53235 * 109.44187 * 298.34712 * 17 16 14 19 19 N 1.47170 * 108.69487 * 51.59370 * 18 17 16 20 20 C 1.36939 * 121.22500 * 129.02776 * 19 18 17 21 21 H 1.08006 * 119.99629 * 214.95938 * 20 19 18 22 22 C 1.38810 * 120.00172 * 34.95447 * 20 19 18 23 23 N 1.31618 * 119.99915 * 355.69453 * 22 20 19 24 24 Si 1.86799 * 119.99902 * 175.68905 * 22 20 19 25 25 H 1.48500 * 109.46892 * 90.00422 * 24 22 20 26 26 H 1.48495 * 109.47060 * 210.00090 * 24 22 20 27 27 H 1.48502 * 109.47125 * 330.00592 * 24 22 20 28 28 C 1.47592 * 117.55123 * 309.04562 * 19 18 17 29 29 H 1.08995 * 111.17313 * 172.81039 * 28 19 18 30 30 C 1.46785 * 120.71892 * 174.10387 * 11 9 8 31 31 H 1.09002 * 109.47345 * 59.99757 * 1 2 3 32 32 H 1.09000 * 109.47280 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47203 * 299.99236 * 1 2 3 34 34 H 1.08005 * 119.40480 * 179.67357 * 5 4 3 35 35 H 1.07996 * 120.26824 * 180.02562 * 6 5 4 36 36 H 1.07998 * 120.82777 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.64181 * 114.88257 * 12 11 9 38 38 H 1.09000 * 109.64403 * 354.25022 * 12 11 9 39 39 H 1.09001 * 109.41474 * 185.36727 * 13 12 11 40 40 H 1.08997 * 109.41574 * 65.56817 * 13 12 11 41 41 H 1.08996 * 109.47983 * 58.33685 * 17 16 14 42 42 H 1.09002 * 109.47920 * 178.35596 * 17 16 14 43 43 H 1.08999 * 109.60234 * 291.82743 * 18 17 16 44 44 H 1.09007 * 109.60013 * 171.35445 * 18 17 16 45 45 H 0.96998 * 119.99814 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.51632 * 245.59691 * 30 11 9 47 47 H 1.08996 * 109.52671 * 5.77755 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3197 2.3132 0.0060 5 6 1.8771 3.5084 -0.0003 6 6 3.2526 3.6574 -0.0063 7 6 4.0588 2.5333 -0.0063 8 6 3.4449 1.2751 0.0004 9 6 4.2569 0.0435 0.0013 10 8 4.0736 -0.8049 0.8526 11 7 5.2021 -0.1413 -0.9417 12 6 5.3507 0.8100 -2.0523 13 6 5.2699 0.0330 -3.3697 14 6 6.2972 -1.0941 -3.3685 15 1 6.2158 -1.6480 -4.3036 16 8 7.6192 -0.5688 -3.2553 17 6 8.6469 -1.5577 -3.3685 18 6 8.5006 -2.5776 -2.2343 19 7 7.1129 -3.0674 -2.2164 20 6 6.8333 -4.4079 -2.2067 21 1 5.9667 -4.7825 -2.7313 22 6 7.6637 -5.2852 -1.5230 23 7 8.7652 -4.8415 -0.9554 24 14 7.2178 -7.0956 -1.4082 25 1 7.8088 -7.8248 -2.5590 26 1 7.7498 -7.6570 -0.1406 27 1 5.7405 -7.2441 -1.4340 28 6 6.0336 -2.0607 -2.2097 29 1 5.0566 -2.5302 -2.3236 30 6 6.1049 -1.2971 -0.8821 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8901 34 1 1.2485 4.3866 -0.0004 35 1 3.6933 4.6434 -0.0110 36 1 5.1349 2.6240 -0.0105 37 1 6.3168 1.3095 -1.9801 38 1 4.5494 1.5479 -2.0125 39 1 5.4731 0.7077 -4.2013 40 1 4.2706 -0.3876 -3.4815 41 1 8.5576 -2.0665 -4.3284 42 1 9.6229 -1.0770 -3.3014 43 1 8.7324 -2.1010 -1.2818 44 1 9.1808 -3.4124 -2.4032 45 1 9.3453 -5.4545 -0.4773 46 1 7.1256 -0.9535 -0.7138 47 1 5.8019 -1.9544 -0.0671 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074331458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:58 Heat of formation + Delta-G solvation = -34.499549 kcal Electronic energy + Delta-G solvation = -32205.618387 eV Core-core repulsion = 27969.442500 eV Total energy + Delta-G solvation = -4236.175887 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.09210 -39.77109 -38.35162 -37.99869 -35.67895 -34.60670 -33.02625 -31.61316 -31.49560 -30.96151 -29.42807 -27.58536 -27.26491 -25.52543 -24.01424 -23.70867 -23.11929 -22.65298 -21.42599 -19.94430 -18.62138 -18.26607 -17.33024 -17.20079 -16.86574 -16.22989 -15.73126 -15.42677 -15.35687 -15.17582 -14.96357 -14.42132 -14.33307 -14.17608 -13.90211 -13.57983 -13.42895 -13.33381 -13.11298 -12.79917 -12.61427 -12.31147 -12.28710 -11.96703 -11.88677 -11.38739 -11.32927 -11.05006 -10.87739 -10.82659 -10.58596 -10.22471 -10.21805 -10.14470 -10.07848 -10.03289 -9.62144 -9.44415 -8.92535 -8.69985 -8.55221 -8.21908 -6.63081 -5.86255 -3.40204 0.65380 1.02392 2.82528 2.96354 3.21708 3.35490 3.42595 3.44883 3.57673 4.03229 4.34878 4.41627 4.57487 4.58378 4.77738 4.95988 4.99641 5.14969 5.15396 5.18571 5.20281 5.32514 5.40797 5.44766 5.48725 5.65640 5.66326 5.78363 5.80332 5.83276 6.02784 6.08016 6.10281 6.12580 6.18640 6.33228 6.40552 6.47084 6.69955 6.78376 6.97673 7.05833 7.16228 7.53371 7.58814 7.72584 7.75016 7.92859 8.38927 8.46563 9.12850 9.69499 10.31054 11.19508 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014126 B = 0.003472 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.622466 B = 8063.647503 C = 9250.552232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.287 6.287 3 C 0.361 3.639 4 N -0.543 5.543 5 C 0.154 3.846 6 C -0.217 4.217 7 C -0.011 4.011 8 C -0.191 4.191 9 C 0.565 3.435 10 O -0.523 6.523 11 N -0.600 5.600 12 C 0.112 3.888 13 C -0.122 4.122 14 C 0.081 3.919 15 H 0.051 0.949 16 O -0.388 6.388 17 C 0.037 3.963 18 C 0.136 3.864 19 N -0.585 5.585 20 C -0.258 4.258 21 H 0.066 0.934 22 C 0.015 3.985 23 N -0.901 5.901 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.288 1.288 27 H -0.277 1.277 28 C 0.135 3.865 29 H 0.074 0.926 30 C 0.107 3.893 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.162 0.838 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.039 0.961 42 H 0.079 0.921 43 H 0.026 0.974 44 H 0.105 0.895 45 H 0.257 0.743 46 H 0.070 0.930 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.366 18.464 -2.514 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.192 6.192 3 C 0.181 3.819 4 N -0.267 5.267 5 C -0.003 4.003 6 C -0.237 4.237 7 C -0.037 4.037 8 C -0.197 4.197 9 C 0.351 3.649 10 O -0.399 6.399 11 N -0.333 5.333 12 C -0.011 4.011 13 C -0.161 4.161 14 C 0.021 3.979 15 H 0.069 0.931 16 O -0.308 6.308 17 C -0.041 4.041 18 C 0.011 3.989 19 N -0.308 5.308 20 C -0.387 4.387 21 H 0.084 0.916 22 C -0.184 4.184 23 N -0.544 5.544 24 Si 0.734 3.266 25 H -0.214 1.214 26 H -0.214 1.214 27 H -0.202 1.202 28 C 0.026 3.974 29 H 0.093 0.907 30 C -0.016 4.016 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.180 0.820 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.057 0.943 42 H 0.097 0.903 43 H 0.044 0.956 44 H 0.123 0.877 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.077 17.642 -1.915 20.919 hybrid contribution 0.495 -0.963 0.064 1.084 sum -10.583 16.679 -1.851 19.840 Atomic orbital electron populations 1.22927 0.77055 1.03370 1.02245 1.86387 1.22900 1.23652 1.86270 1.19757 0.87970 0.85027 0.89136 1.67416 1.40362 0.98666 1.20231 1.22581 0.93049 0.93635 0.91009 1.21907 0.94709 0.99783 1.07331 1.21641 1.01041 0.90026 0.90956 1.20010 0.91696 0.95689 1.12306 1.17809 0.79681 0.85418 0.81995 1.90813 1.67351 1.43737 1.37991 1.48200 1.33788 1.26608 1.24707 1.21712 1.02044 0.91451 0.85899 1.21786 0.98791 0.98001 0.97499 1.22205 0.83226 0.93741 0.98703 0.93110 1.87701 1.14225 1.34560 1.94279 1.23395 0.89527 0.91136 1.00020 1.21605 0.87797 0.95997 0.93515 1.44165 0.99475 1.01178 1.85963 1.19112 1.11338 0.81825 1.26443 0.91617 1.25335 0.97591 0.98915 0.96606 1.69878 1.12627 1.34334 1.37580 0.86268 0.78423 0.84714 0.77228 1.21358 1.21405 1.20246 1.21606 0.94055 0.89951 0.91757 0.90737 1.22337 0.92256 0.85811 1.01169 0.92244 0.88340 0.92188 0.82043 0.83907 0.83532 0.90502 0.90626 0.90452 0.90564 0.94255 0.90260 0.95571 0.87737 0.93310 0.91183 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 101.05 1.05 1.47 16 2 O -0.29 -4.44 9.69 -20.89 -0.20 -4.65 16 3 C 0.36 5.20 7.50 -16.61 -0.12 5.07 16 4 N -0.54 -6.48 9.21 -12.98 -0.12 -6.60 16 5 C 0.15 1.33 11.17 -17.49 -0.20 1.14 16 6 C -0.22 -1.72 10.09 -39.50 -0.40 -2.12 16 7 C -0.01 -0.11 7.90 -38.89 -0.31 -0.42 16 8 C -0.19 -2.75 4.64 -104.69 -0.49 -3.23 16 9 C 0.57 10.24 6.85 -12.47 -0.09 10.16 16 10 O -0.52 -11.76 16.19 2.36 0.04 -11.72 16 11 N -0.60 -10.28 2.96 -174.01 -0.52 -10.80 16 12 C 0.11 1.50 5.46 -3.70 -0.02 1.48 16 13 C -0.12 -1.69 5.82 -26.90 -0.16 -1.85 16 14 C 0.08 1.44 2.72 -26.89 -0.07 1.37 16 15 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 16 O -0.39 -7.17 9.59 -35.23 -0.34 -7.51 16 17 C 0.04 0.71 6.98 37.28 0.26 0.97 16 18 C 0.14 3.17 4.88 -3.56 -0.02 3.15 16 19 N -0.59 -14.40 2.71 -163.87 -0.44 -14.85 16 20 C -0.26 -6.99 9.67 -15.06 -0.15 -7.14 16 21 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 22 C 0.02 0.41 5.33 -17.43 -0.09 0.32 16 23 N -0.90 -25.44 10.68 55.49 0.59 -24.85 16 24 Si 0.90 21.65 29.56 -169.99 -5.02 16.63 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 28 C 0.13 2.85 3.00 -67.07 -0.20 2.65 16 29 H 0.07 1.65 8.03 -51.93 -0.42 1.23 16 30 C 0.11 2.23 5.63 -3.72 -0.02 2.21 16 31 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 32 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 34 H 0.16 0.81 8.06 -52.48 -0.42 0.39 16 35 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.15 1.31 7.80 -52.49 -0.41 0.90 16 37 H 0.08 1.00 7.94 -51.93 -0.41 0.59 16 38 H 0.08 0.85 5.36 -51.93 -0.28 0.57 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.03 0.65 7.17 -51.93 -0.37 0.28 16 44 H 0.10 2.70 6.11 -51.93 -0.32 2.38 16 45 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.07 1.52 6.56 -51.93 -0.34 1.17 16 47 H 0.09 2.17 6.99 -51.93 -0.36 1.80 16 LS Contribution 373.17 15.07 5.62 5.62 Total: -1.00 -33.29 373.17 -8.08 -41.37 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.68 Total: 2.12 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: -1.02 Total: 15.22 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.49 Total: -57.10 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.50 Total: -23.88 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.29 -8.08 -41.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074331458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.875 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds