Wall clock time and date at job start Wed Apr 1 2020 05:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35733 * 117.00030 * 2 1 4 4 C 1.39282 * 120.84677 * 0.20671 * 3 2 1 5 5 C 1.37953 * 119.09396 * 180.24722 * 4 3 2 6 6 N 1.31972 * 120.82061 * 359.79563 * 5 4 3 7 7 C 1.31948 * 121.86777 * 359.97099 * 6 5 4 8 8 C 1.37991 * 120.81634 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.45199 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47203 * 265.00361 * 9 8 7 11 11 O 1.21280 * 120.00086 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00018 * 180.02562 * 10 9 8 13 13 C 1.47051 * 120.11994 * 359.97162 * 12 10 9 14 14 C 1.53541 * 107.35808 * 130.24991 * 13 12 10 15 15 O 1.42653 * 108.38460 * 55.59254 * 14 13 12 16 16 C 1.42770 * 115.69016 * 295.54130 * 15 14 13 17 17 H 1.08992 * 112.74223 * 290.34659 * 16 15 14 18 18 C 1.55400 * 107.09048 * 166.05116 * 16 15 14 19 19 N 1.47480 * 104.78770 * 281.69903 * 18 16 15 20 20 C 1.36938 * 125.68598 * 155.57810 * 19 18 16 21 21 H 1.07999 * 119.99813 * 180.02562 * 20 19 18 22 22 C 1.38815 * 120.00199 * 0.02784 * 20 19 18 23 23 N 1.31617 * 119.99679 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99957 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46916 * 90.00002 * 24 22 20 26 26 H 1.48502 * 109.47436 * 210.00040 * 24 22 20 27 27 H 1.48499 * 109.47469 * 330.00331 * 24 22 20 28 28 C 1.47215 * 108.62304 * 335.60294 * 19 18 16 29 29 C 1.45666 * 120.11842 * 179.97438 * 12 10 9 30 30 H 1.08997 * 110.55441 * 345.87574 * 29 12 10 31 31 H 1.09006 * 109.47183 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46889 * 299.99638 * 1 2 3 33 33 H 1.08994 * 109.46985 * 60.00240 * 1 2 3 34 34 H 1.08001 * 120.45755 * 0.02562 * 4 3 2 35 35 H 1.07999 * 119.59061 * 179.76343 * 5 4 3 36 36 H 1.07996 * 119.58971 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47308 * 145.00174 * 9 8 7 38 38 H 1.09001 * 109.47075 * 24.99753 * 9 8 7 39 39 H 1.09002 * 109.87209 * 10.79027 * 13 12 10 40 40 H 1.08995 * 109.87909 * 249.71436 * 13 12 10 41 41 H 1.09004 * 109.68064 * 295.87493 * 14 13 12 42 42 H 1.08998 * 109.71482 * 175.33500 * 14 13 12 43 43 H 1.08999 * 110.37656 * 40.53232 * 18 16 15 44 44 H 1.09007 * 110.37264 * 162.75727 * 18 16 15 45 45 H 0.96999 * 119.99563 * 180.02562 * 23 22 20 46 46 H 1.08999 * 109.95888 * 241.88717 * 28 19 18 47 47 H 1.08995 * 109.95869 * 120.64351 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3886 0.0043 5 6 1.9676 3.5980 -0.0010 6 7 3.2865 3.6457 -0.0061 7 6 4.0231 2.5509 -0.0057 8 6 3.4345 1.3029 -0.0004 9 6 4.2838 0.0579 -0.0006 10 6 4.4594 -0.4303 -1.4155 11 8 3.9451 0.1730 -2.3333 12 7 5.1870 -1.5379 -1.6608 13 6 5.8113 -2.2717 -0.5498 14 6 5.4433 -3.7532 -0.7153 15 8 5.8538 -4.1764 -2.0142 16 6 5.1893 -3.5458 -3.1093 17 1 4.1448 -3.8444 -3.1968 18 6 6.0100 -3.8689 -4.3888 19 7 7.1608 -2.9478 -4.3404 20 6 8.3700 -3.1474 -4.9513 21 1 9.1523 -2.4091 -4.8545 22 6 8.5902 -4.2986 -5.6951 23 7 7.6367 -5.1980 -5.8136 24 14 10.2395 -4.5704 -6.5290 25 1 11.1489 -5.2928 -5.6035 26 1 10.0445 -5.3765 -7.7608 27 1 10.8363 -3.2582 -6.8854 28 6 6.7929 -1.7783 -3.5255 29 6 5.3579 -2.0124 -3.0273 30 1 4.6475 -1.5234 -3.6939 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 0.2245 2.3566 0.0081 35 1 1.4008 4.5173 -0.0016 36 1 5.0999 2.6328 -0.0103 37 1 3.7954 -0.7152 0.5925 38 1 5.2596 0.2837 0.4295 39 1 5.4302 -1.8990 0.4010 40 1 6.8940 -2.1522 -0.5887 41 1 4.3652 -3.8773 -0.6124 42 1 5.9551 -4.3460 0.0428 43 1 6.3513 -4.9039 -4.3694 44 1 5.4110 -3.6842 -5.2806 45 1 7.7907 -6.0025 -6.3330 46 1 6.8332 -0.8740 -4.1328 47 1 7.4712 -1.6877 -2.6772 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083117530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:14 Heat of formation + Delta-G solvation = -27.419458 kcal Electronic energy + Delta-G solvation = -31541.605808 eV Core-core repulsion = 27305.736936 eV Total energy + Delta-G solvation = -4235.868871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.10591 -40.24035 -38.48783 -38.21571 -35.70090 -34.60904 -33.57808 -32.19488 -31.45144 -29.79027 -28.85270 -27.88153 -27.61120 -26.83161 -24.40641 -23.20445 -23.15596 -22.83460 -20.53922 -20.28926 -18.67842 -18.38036 -17.42747 -17.39092 -17.01851 -16.49491 -16.10530 -15.62080 -15.41186 -15.13830 -15.04622 -14.87980 -14.52264 -14.44738 -14.22378 -13.84118 -13.68137 -13.46975 -13.29194 -12.81704 -12.57765 -12.55879 -12.11871 -11.94620 -11.88507 -11.78432 -11.44785 -11.17049 -11.08849 -10.93996 -10.75352 -10.61858 -10.14482 -9.87875 -9.81695 -9.73288 -9.56284 -9.48557 -9.32926 -8.91951 -8.66141 -8.21484 -6.82446 -5.63304 -3.04326 0.84813 1.13911 2.72355 2.82160 3.01462 3.43248 3.47903 3.49963 3.61315 4.17006 4.19940 4.37257 4.51158 4.52100 4.58635 4.63867 4.76559 4.80575 4.93557 4.96829 5.06373 5.07120 5.14386 5.24347 5.31904 5.33749 5.44234 5.46109 5.51477 5.65913 5.70542 5.73495 5.80938 5.87436 5.89339 6.09776 6.28645 6.31239 6.51328 6.66849 6.85948 6.90035 7.25787 7.50169 7.60648 7.75169 7.80412 7.92511 8.28623 8.38442 9.22391 9.83520 10.46837 11.41489 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.002664 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.745519 B =10507.480489 C =11066.892283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.184 3.816 4 C -0.263 4.263 5 C 0.133 3.867 6 N -0.507 5.507 7 C 0.146 3.854 8 C -0.148 4.148 9 C -0.088 4.088 10 C 0.517 3.483 11 O -0.535 6.535 12 N -0.598 5.598 13 C 0.071 3.929 14 C 0.047 3.953 15 O -0.353 6.353 16 C 0.054 3.946 17 H 0.069 0.931 18 C 0.160 3.840 19 N -0.595 5.595 20 C -0.218 4.218 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.923 5.923 24 Si 0.916 3.084 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.136 3.864 29 C 0.101 3.899 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.138 0.862 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.047 0.953 42 H 0.100 0.900 43 H 0.123 0.877 44 H 0.030 0.970 45 H 0.253 0.747 46 H 0.027 0.973 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.446 9.974 17.811 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.216 6.216 3 C 0.130 3.870 4 C -0.284 4.284 5 C -0.024 4.024 6 N -0.219 5.219 7 C -0.010 4.010 8 C -0.151 4.151 9 C -0.128 4.128 10 C 0.305 3.695 11 O -0.411 6.411 12 N -0.332 5.332 13 C -0.052 4.052 14 C -0.031 4.031 15 O -0.271 6.271 16 C -0.006 4.006 17 H 0.087 0.913 18 C 0.035 3.965 19 N -0.321 5.321 20 C -0.347 4.347 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.571 5.571 24 Si 0.747 3.253 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.208 1.208 28 C 0.009 3.991 29 C -0.003 4.003 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.156 0.844 35 H 0.174 0.826 36 H 0.178 0.822 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.118 0.882 43 H 0.140 0.860 44 H 0.048 0.952 45 H 0.063 0.937 46 H 0.044 0.956 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -13.989 10.589 17.124 24.516 hybrid contribution -0.136 -0.623 -0.335 0.720 sum -14.125 9.967 16.789 24.098 Atomic orbital electron populations 1.23139 0.77738 1.04450 1.01547 1.86070 1.21889 1.26243 1.87447 1.19092 0.91799 0.84699 0.91425 1.22165 1.01421 0.93175 1.11603 1.22532 0.90347 0.96900 0.92589 1.67729 1.07087 1.31877 1.15203 1.22525 1.00266 0.86098 0.92098 1.19746 0.90842 0.96430 1.08085 1.20435 1.00907 0.95838 0.95643 1.20447 0.78135 0.80000 0.90898 1.90700 1.48118 1.55998 1.46308 1.47690 1.51149 1.26704 1.07621 1.22559 0.99531 0.93747 0.89376 1.22840 0.99170 0.93360 0.87774 1.88017 1.63225 1.63649 1.12187 1.24159 0.96320 0.89882 0.90221 0.91293 1.22139 0.86476 0.99949 0.87951 1.44334 1.11958 1.17571 1.58276 1.19045 0.88973 1.03204 1.23434 0.90448 1.24767 0.98191 0.96985 1.00618 1.69731 1.31423 1.10863 1.45119 0.86046 0.82949 0.77643 0.78685 1.21603 1.21670 1.20782 1.21366 0.91848 0.91606 0.94263 1.22288 0.99634 0.96088 0.82263 0.87751 0.87826 0.92416 0.92260 0.84430 0.82605 0.82215 0.87638 0.87647 0.89305 0.89983 0.93475 0.88238 0.85958 0.95219 0.93656 0.95556 0.95475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.84 101.05 0.99 1.17 16 2 O -0.31 -3.35 9.77 -18.91 -0.18 -3.53 16 3 C 0.18 2.12 6.70 -38.82 -0.26 1.86 16 4 C -0.26 -2.54 9.11 -39.30 -0.36 -2.90 16 5 C 0.13 1.34 11.17 -17.60 -0.20 1.14 16 6 N -0.51 -6.20 10.36 -13.33 -0.14 -6.33 16 7 C 0.15 1.71 10.84 -17.59 -0.19 1.52 16 8 C -0.15 -1.76 4.40 -104.34 -0.46 -2.22 16 9 C -0.09 -0.95 3.95 -29.03 -0.11 -1.06 16 10 C 0.52 7.91 7.67 -10.99 -0.08 7.82 16 11 O -0.53 -10.30 15.46 5.56 0.09 -10.22 16 12 N -0.60 -9.33 2.72 -164.65 -0.45 -9.78 16 13 C 0.07 0.88 6.27 -3.46 -0.02 0.86 16 14 C 0.05 0.63 7.02 37.44 0.26 0.90 16 15 O -0.35 -6.86 10.09 -35.23 -0.36 -7.22 16 16 C 0.05 1.07 4.12 -24.68 -0.10 0.97 16 17 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 18 C 0.16 3.95 5.47 -2.23 -0.01 3.94 16 19 N -0.60 -15.59 3.40 -169.95 -0.58 -16.17 16 20 C -0.22 -6.18 10.28 -15.06 -0.15 -6.34 16 21 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 22 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 23 N -0.92 -26.99 10.09 55.49 0.56 -26.43 16 24 Si 0.92 22.31 29.55 -169.99 -5.02 17.29 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 28 C 0.14 3.03 6.88 -3.29 -0.02 3.01 16 29 C 0.10 1.95 3.07 -67.24 -0.21 1.75 16 30 H 0.10 2.14 7.10 -51.93 -0.37 1.78 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.28 7.70 -51.93 -0.40 -0.12 16 33 H 0.06 0.38 7.72 -51.93 -0.40 -0.02 16 34 H 0.14 0.93 6.47 -52.49 -0.34 0.59 16 35 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.11 0.98 7.23 -51.93 -0.38 0.60 16 38 H 0.11 0.85 7.92 -51.93 -0.41 0.44 16 39 H 0.09 0.74 5.95 -51.93 -0.31 0.43 16 40 H 0.08 1.08 7.56 -51.93 -0.39 0.69 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.12 3.41 5.86 -51.93 -0.30 3.11 16 44 H 0.03 0.77 8.14 -51.92 -0.42 0.34 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.03 0.60 7.25 -51.93 -0.38 0.23 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -35.96 376.91 -8.03 -43.99 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.61 Total: 0.69 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -1.02 Total: 12.02 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.60 Total: -58.71 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.45 Total: -20.96 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.96 -8.03 -43.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083117530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.569 kcal (2) G-P(sol) polarization free energy of solvation -35.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds