Wall clock time and date at job start Wed Apr 1 2020 05:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35733 * 117.00030 * 2 1 4 4 C 1.39282 * 120.84677 * 0.20671 * 3 2 1 5 5 C 1.37953 * 119.09396 * 180.24722 * 4 3 2 6 6 N 1.31972 * 120.82061 * 359.79563 * 5 4 3 7 7 C 1.31948 * 121.86777 * 359.97099 * 6 5 4 8 8 C 1.37991 * 120.81634 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.45199 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47203 * 265.00361 * 9 8 7 11 11 O 1.21280 * 120.00086 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00018 * 180.02562 * 10 9 8 13 13 C 1.47051 * 120.11994 * 359.97162 * 12 10 9 14 14 C 1.53541 * 107.35808 * 130.24991 * 13 12 10 15 15 O 1.42653 * 108.38460 * 55.59254 * 14 13 12 16 16 C 1.42770 * 115.69016 * 295.54130 * 15 14 13 17 17 H 1.08992 * 112.74223 * 290.34659 * 16 15 14 18 18 C 1.55400 * 107.09048 * 166.05116 * 16 15 14 19 19 N 1.47480 * 104.78770 * 281.69903 * 18 16 15 20 20 C 1.36938 * 125.68598 * 155.57810 * 19 18 16 21 21 H 1.07999 * 119.99813 * 180.02562 * 20 19 18 22 22 C 1.38815 * 120.00199 * 0.02784 * 20 19 18 23 23 N 1.31617 * 119.99679 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99957 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46916 * 90.00002 * 24 22 20 26 26 H 1.48502 * 109.47436 * 210.00040 * 24 22 20 27 27 H 1.48499 * 109.47469 * 330.00331 * 24 22 20 28 28 C 1.47215 * 108.62304 * 335.60294 * 19 18 16 29 29 C 1.45666 * 120.11842 * 179.97438 * 12 10 9 30 30 H 1.08997 * 110.55441 * 345.87574 * 29 12 10 31 31 H 1.09006 * 109.47183 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46889 * 299.99638 * 1 2 3 33 33 H 1.08994 * 109.46985 * 60.00240 * 1 2 3 34 34 H 1.08001 * 120.45755 * 0.02562 * 4 3 2 35 35 H 1.07999 * 119.59061 * 179.76343 * 5 4 3 36 36 H 1.07996 * 119.58971 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47308 * 145.00174 * 9 8 7 38 38 H 1.09001 * 109.47075 * 24.99753 * 9 8 7 39 39 H 1.09002 * 109.87209 * 10.79027 * 13 12 10 40 40 H 1.08995 * 109.87909 * 249.71436 * 13 12 10 41 41 H 1.09004 * 109.68064 * 295.87493 * 14 13 12 42 42 H 1.08998 * 109.71482 * 175.33500 * 14 13 12 43 43 H 1.08999 * 110.37656 * 40.53232 * 18 16 15 44 44 H 1.09007 * 110.37264 * 162.75727 * 18 16 15 45 45 H 0.96999 * 119.99563 * 180.02562 * 23 22 20 46 46 H 1.08999 * 109.95888 * 241.88717 * 28 19 18 47 47 H 1.08995 * 109.95869 * 120.64351 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3886 0.0043 5 6 1.9676 3.5980 -0.0010 6 7 3.2865 3.6457 -0.0061 7 6 4.0231 2.5509 -0.0057 8 6 3.4345 1.3029 -0.0004 9 6 4.2838 0.0579 -0.0006 10 6 4.4594 -0.4303 -1.4155 11 8 3.9451 0.1730 -2.3333 12 7 5.1870 -1.5379 -1.6608 13 6 5.8113 -2.2717 -0.5498 14 6 5.4433 -3.7532 -0.7153 15 8 5.8538 -4.1764 -2.0142 16 6 5.1893 -3.5458 -3.1093 17 1 4.1448 -3.8444 -3.1968 18 6 6.0100 -3.8689 -4.3888 19 7 7.1608 -2.9478 -4.3404 20 6 8.3700 -3.1474 -4.9513 21 1 9.1523 -2.4091 -4.8545 22 6 8.5902 -4.2986 -5.6951 23 7 7.6367 -5.1980 -5.8136 24 14 10.2395 -4.5704 -6.5290 25 1 11.1489 -5.2928 -5.6035 26 1 10.0445 -5.3765 -7.7608 27 1 10.8363 -3.2582 -6.8854 28 6 6.7929 -1.7783 -3.5255 29 6 5.3579 -2.0124 -3.0273 30 1 4.6475 -1.5234 -3.6939 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 0.2245 2.3566 0.0081 35 1 1.4008 4.5173 -0.0016 36 1 5.0999 2.6328 -0.0103 37 1 3.7954 -0.7152 0.5925 38 1 5.2596 0.2837 0.4295 39 1 5.4302 -1.8990 0.4010 40 1 6.8940 -2.1522 -0.5887 41 1 4.3652 -3.8773 -0.6124 42 1 5.9551 -4.3460 0.0428 43 1 6.3513 -4.9039 -4.3694 44 1 5.4110 -3.6842 -5.2806 45 1 7.7907 -6.0025 -6.3330 46 1 6.8332 -0.8740 -4.1328 47 1 7.4712 -1.6877 -2.6772 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083117530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:12 Heat of formation + Delta-G solvation = -53.260715 kcal Electronic energy + Delta-G solvation = -31542.726369 eV Core-core repulsion = 27305.736936 eV Total energy + Delta-G solvation = -4236.989432 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.03270 -41.41958 -39.65239 -39.14020 -37.40610 -35.94628 -34.58890 -33.98801 -32.19377 -31.46216 -29.92940 -29.21155 -28.58072 -28.16155 -26.26927 -24.41325 -23.89659 -23.78627 -22.27435 -21.75571 -19.79986 -19.26927 -19.04591 -18.51508 -18.18241 -17.90247 -16.95145 -16.84066 -16.68176 -16.49736 -16.09349 -15.98066 -15.86030 -15.56066 -15.25473 -15.16552 -14.91169 -14.59590 -14.32539 -14.29039 -13.92722 -13.63267 -13.49944 -13.25757 -13.08970 -12.89224 -12.72365 -12.60438 -12.55778 -12.47906 -12.14579 -12.09028 -12.03771 -11.81838 -11.37391 -11.03556 -10.88116 -10.78451 -10.52369 -10.10505 -9.73510 -9.55562 -8.92571 -7.78047 -5.23013 0.07707 0.35357 1.47105 1.49723 1.56783 1.58316 1.81735 2.17918 2.50075 2.80825 2.86373 3.32915 3.44733 3.48606 3.58140 3.63672 3.69682 3.81723 3.88894 3.93054 4.05014 4.13162 4.21243 4.26272 4.31141 4.33083 4.34200 4.40119 4.41902 4.58542 4.61723 4.68685 4.74661 4.79783 4.81324 4.91276 4.95085 4.96812 5.07054 5.28026 5.44142 5.45037 5.58007 5.72725 6.19778 6.23830 6.34851 6.48711 7.03151 7.07309 7.10929 7.73091 8.36814 9.24460 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.002664 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.745519 B =10507.480489 C =11066.892283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.169 3.831 4 C -0.263 4.263 5 C 0.125 3.875 6 N -0.534 5.534 7 C 0.133 3.867 8 C -0.167 4.167 9 C -0.076 4.076 10 C 0.516 3.484 11 O -0.581 6.581 12 N -0.598 5.598 13 C 0.071 3.929 14 C 0.038 3.962 15 O -0.385 6.385 16 C 0.074 3.926 17 H 0.088 0.912 18 C 0.162 3.838 19 N -0.614 5.614 20 C -0.240 4.240 21 H 0.079 0.921 22 C -0.063 4.063 23 N -0.947 5.947 24 Si 0.984 3.016 25 H -0.283 1.283 26 H -0.292 1.292 27 H -0.272 1.272 28 C 0.139 3.861 29 C 0.117 3.883 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.165 0.835 35 H 0.184 0.816 36 H 0.173 0.827 37 H 0.129 0.871 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.129 0.871 43 H 0.090 0.910 44 H 0.006 0.994 45 H 0.249 0.751 46 H 0.012 0.988 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.091 10.534 20.503 27.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.235 6.235 3 C 0.115 3.885 4 C -0.283 4.283 5 C -0.031 4.031 6 N -0.246 5.246 7 C -0.023 4.023 8 C -0.170 4.170 9 C -0.116 4.116 10 C 0.307 3.693 11 O -0.460 6.460 12 N -0.331 5.331 13 C -0.051 4.051 14 C -0.038 4.038 15 O -0.304 6.304 16 C 0.015 3.985 17 H 0.106 0.894 18 C 0.036 3.964 19 N -0.340 5.340 20 C -0.369 4.369 21 H 0.096 0.904 22 C -0.255 4.255 23 N -0.596 5.596 24 Si 0.812 3.188 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.198 1.198 28 C 0.012 3.988 29 C 0.011 3.989 30 H 0.105 0.895 31 H 0.136 0.864 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.182 0.818 35 H 0.201 0.799 36 H 0.190 0.810 37 H 0.147 0.853 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.147 0.853 43 H 0.107 0.893 44 H 0.024 0.976 45 H 0.059 0.941 46 H 0.030 0.970 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -14.644 11.160 19.872 27.091 hybrid contribution -0.019 -0.764 -1.132 1.366 sum -14.663 10.397 18.741 25.968 Atomic orbital electron populations 1.23415 0.75894 1.05843 1.02559 1.86033 1.23893 1.26150 1.87378 1.19373 0.92174 0.85508 0.91446 1.22473 1.02819 0.92475 1.10536 1.23058 0.90009 0.98326 0.91700 1.67744 1.08251 1.32409 1.16236 1.22808 1.01062 0.86226 0.92166 1.19921 0.91449 0.96757 1.08915 1.20479 1.02816 0.95960 0.92353 1.21299 0.76679 0.78947 0.92424 1.90682 1.49845 1.57242 1.48226 1.47757 1.51473 1.27261 1.06607 1.22825 0.99255 0.92784 0.90212 1.23244 1.00733 0.94540 0.85310 1.87940 1.63973 1.64238 1.14213 1.23739 0.96048 0.90079 0.88673 0.89422 1.21864 0.86510 0.97971 0.90025 1.44577 1.11790 1.19084 1.58593 1.19388 0.89993 1.03487 1.23986 0.90358 1.25629 1.01716 0.96774 1.01430 1.69992 1.33118 1.11008 1.45502 0.85005 0.78796 0.77681 0.77356 1.20984 1.21821 1.19754 1.21405 0.94025 0.89759 0.93600 1.21780 0.96901 0.95595 0.84579 0.89539 0.86377 0.90336 0.92253 0.81763 0.79904 0.81016 0.85342 0.84395 0.84198 0.90653 0.91756 0.85331 0.89252 0.97645 0.94123 0.96979 0.95020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.84 113.37 1.12 1.30 16 2 O -0.32 -6.35 9.77 -90.56 -0.88 -7.24 16 3 C 0.17 3.58 6.70 22.76 0.15 3.74 16 4 C -0.26 -4.54 9.11 22.45 0.20 -4.33 16 5 C 0.12 2.30 11.17 84.60 0.95 3.25 16 6 N -0.53 -12.45 10.36 -196.09 -2.03 -14.48 16 7 C 0.13 2.94 10.84 84.62 0.92 3.86 16 8 C -0.17 -3.65 4.40 -19.68 -0.09 -3.74 16 9 C -0.08 -1.40 3.95 29.10 0.11 -1.29 16 10 C 0.52 14.88 7.67 87.66 0.67 15.55 16 11 O -0.58 -22.27 15.46 -3.03 -0.05 -22.32 16 12 N -0.60 -17.60 2.72 -793.23 -2.16 -19.76 16 13 C 0.07 1.51 6.27 86.46 0.54 2.05 16 14 C 0.04 0.92 7.02 72.16 0.51 1.43 16 15 O -0.38 -14.63 10.09 -148.98 -1.50 -16.13 16 16 C 0.07 2.97 4.12 31.92 0.13 3.10 16 17 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 18 C 0.16 8.35 5.47 87.02 0.48 8.82 16 19 N -0.61 -33.31 3.40 -691.60 -2.35 -35.67 16 20 C -0.24 -13.95 10.28 84.03 0.86 -13.08 16 21 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 22 C -0.06 -3.64 5.49 84.86 0.47 -3.17 16 23 N -0.95 -57.27 10.09 21.65 0.22 -57.06 16 24 Si 0.98 46.57 29.55 68.60 2.03 48.60 16 25 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 27 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 28 C 0.14 6.32 6.88 86.48 0.59 6.91 16 29 C 0.12 4.54 3.07 45.89 0.14 4.68 16 30 H 0.09 3.67 7.10 -2.39 -0.02 3.65 16 31 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.08 0.53 7.70 -2.39 -0.02 0.51 16 33 H 0.06 0.65 7.72 -2.39 -0.02 0.63 16 34 H 0.16 1.76 6.47 -2.91 -0.02 1.75 16 35 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 36 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.13 1.79 7.23 -2.39 -0.02 1.78 16 38 H 0.14 1.62 7.92 -2.39 -0.02 1.60 16 39 H 0.14 1.56 5.95 -2.39 -0.01 1.55 16 40 H 0.08 1.76 7.56 -2.39 -0.02 1.74 16 41 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.09 5.23 5.86 -2.39 -0.01 5.22 16 44 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 45 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 46 H 0.01 0.58 8.14 -2.39 -0.02 0.57 16 47 H 0.03 1.41 7.25 -2.39 -0.02 1.39 16 Total: -1.00 -82.42 376.91 2.01 -80.40 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.99 Total: 14.58 kcal Atomic # 6 Polarization: 21.32 SS G_CDS: 7.76 Total: 29.07 kcal Atomic # 7 Polarization: -120.64 SS G_CDS: -6.33 Total: -126.96 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -2.44 Total: -45.69 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -82.42 2.01 -80.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083117530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.141 kcal (2) G-P(sol) polarization free energy of solvation -82.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds