Wall clock time and date at job start Wed Apr 1 2020 04:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46500 * 119.99878 * 2 1 4 4 C 1.53002 * 109.47123 * 276.12641 * 3 2 1 5 5 H 1.08999 * 112.96573 * 69.58032 * 4 3 2 6 6 C 1.53953 * 113.76850 * 297.90094 * 4 3 2 7 7 C 1.53941 * 86.28829 * 222.09119 * 6 4 3 8 8 N 1.47579 * 113.76870 * 201.25880 * 4 3 2 9 9 C 1.36940 * 134.49314 * 318.92850 * 8 4 3 10 10 H 1.07997 * 120.00011 * 6.01846 * 9 8 4 11 11 C 1.38810 * 119.99947 * 186.01412 * 9 8 4 12 12 N 1.31618 * 120.00092 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99905 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47570 * 59.99913 * 13 11 9 15 15 H 1.48499 * 109.47325 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.47093 * 300.00058 * 13 11 9 17 17 C 1.34774 * 119.99687 * 180.02562 * 2 1 3 18 18 O 1.21594 * 119.99721 * 175.72033 * 17 2 1 19 19 C 1.47519 * 120.00048 * 355.71653 * 17 2 1 20 20 C 1.39866 * 120.71343 * 47.15397 * 19 17 2 21 21 C 1.38607 * 118.64085 * 179.91895 * 20 19 17 22 22 C 1.38094 * 119.53365 * 359.96014 * 21 20 19 23 23 N 1.32435 * 120.63970 * 0.17124 * 22 21 20 24 24 C 1.31998 * 122.27674 * 359.51530 * 23 22 21 25 25 O 1.35437 * 119.83143 * 180.36940 * 24 23 22 26 26 C 1.50927 * 121.02167 * 180.32845 * 22 21 20 27 27 C 1.52931 * 109.77693 * 342.75437 * 26 22 21 28 28 O 1.43217 * 108.52369 * 49.53536 * 27 26 22 29 29 C 1.42733 * 113.07194 * 289.23858 * 28 27 26 30 30 H 1.08997 * 109.46985 * 95.01505 * 1 2 3 31 31 H 1.08994 * 109.47061 * 215.01937 * 1 2 3 32 32 H 1.09000 * 109.46815 * 335.01694 * 1 2 3 33 33 H 1.09005 * 109.46725 * 156.12571 * 3 2 1 34 34 H 1.08997 * 109.47400 * 36.12400 * 3 2 1 35 35 H 1.09000 * 113.73942 * 336.43927 * 6 4 3 36 36 H 1.08997 * 113.74328 * 107.64094 * 6 4 3 37 37 H 1.09000 * 113.76714 * 137.90582 * 7 6 4 38 38 H 1.09000 * 113.77457 * 269.19611 * 7 6 4 39 39 H 0.96996 * 120.00093 * 180.02562 * 12 11 9 40 40 H 1.08004 * 120.67624 * 359.94526 * 20 19 17 41 41 H 0.96691 * 113.99874 * 270.27148 * 25 24 23 42 42 H 1.09004 * 109.41749 * 222.66597 * 26 22 21 43 43 H 1.08999 * 109.37641 * 102.82034 * 26 22 21 44 44 H 1.09003 * 109.63318 * 289.83029 * 27 26 22 45 45 H 1.08997 * 109.63189 * 169.24026 * 27 26 22 46 46 H 1.08997 * 109.34410 * 291.30879 * 29 28 27 47 47 H 1.09003 * 109.34222 * 171.78771 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3192 1.7874 -1.4343 5 1 1.3673 2.1195 -1.8486 6 6 3.1097 0.8521 -2.3674 7 6 3.7717 2.1272 -2.9202 8 7 3.4203 2.7509 -1.6270 9 6 3.9162 3.7997 -0.8993 10 1 3.5312 4.0008 0.0895 11 6 4.9137 4.6043 -1.4326 12 7 5.3827 4.3595 -2.6378 13 14 5.5906 6.0344 -0.4398 14 1 6.1787 5.5248 0.8249 15 1 6.6385 6.7320 -1.2276 16 1 4.4924 6.9840 -0.1275 17 6 2.1389 -1.1672 -0.0005 18 8 3.3523 -1.1687 -0.0791 19 6 1.4043 -2.4430 0.0943 20 6 0.2844 -2.6839 -0.7082 21 6 -0.3724 -3.8982 -0.5850 22 6 0.0907 -4.8340 0.3188 23 7 1.1521 -4.5801 1.0690 24 6 1.8175 -3.4431 0.9872 25 8 2.9013 -3.2386 1.7733 26 6 -0.5943 -6.1697 0.4752 27 6 -1.9955 -6.1072 -0.1343 28 8 -1.8951 -5.5496 -1.4496 29 6 -1.5814 -4.1572 -1.4445 30 1 -0.3633 -0.0898 -1.0237 31 1 -0.3633 -0.8416 0.5897 32 1 -0.3633 0.9315 0.4340 33 1 3.1931 1.1135 0.4160 34 1 1.6604 1.9984 0.6058 35 1 3.8000 0.1908 -1.8437 36 1 2.4878 0.3284 -3.0934 37 1 4.8448 2.0291 -3.0847 38 1 3.2485 2.5597 -3.7730 39 1 6.0800 4.9215 -3.0103 40 1 -0.0611 -1.9390 -1.4099 41 1 2.6968 -2.8346 2.6276 42 1 -0.6705 -6.4161 1.5343 43 1 -0.0114 -6.9369 -0.0344 44 1 -2.6355 -5.4765 0.4828 45 1 -2.4143 -7.1118 -0.1936 46 1 -2.4301 -3.5973 -1.0516 47 1 -1.3765 -3.8295 -2.4637 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085919248.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:22 Heat of formation + Delta-G solvation = -39.927636 kcal Electronic energy + Delta-G solvation = -31067.518712 eV Core-core repulsion = 26831.107445 eV Total energy + Delta-G solvation = -4236.411267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.32853 -40.89600 -39.72334 -39.12516 -37.85889 -36.54671 -34.72434 -34.17974 -32.80666 -31.79197 -29.85761 -29.73316 -27.71512 -26.55306 -25.92313 -25.27117 -24.36897 -23.81429 -22.41996 -20.96425 -20.57824 -19.60738 -18.73926 -18.54627 -18.16844 -17.62867 -17.25394 -17.05644 -16.81599 -16.47954 -16.10823 -15.93085 -15.77207 -15.25505 -15.06832 -14.92793 -14.78571 -14.55025 -14.22340 -13.92607 -13.74056 -13.70902 -13.38084 -13.11014 -13.05481 -12.95035 -12.88583 -12.64548 -12.58547 -12.50141 -12.31870 -11.89493 -11.82575 -11.61506 -11.32680 -11.23942 -11.02477 -10.84479 -10.58452 -10.51639 -9.83110 -9.65228 -8.88376 -7.89521 -5.22253 -0.49594 -0.08164 1.43370 1.47933 1.53440 1.57470 1.82792 2.26639 2.47236 2.49411 2.93313 3.19517 3.32392 3.39088 3.44367 3.56937 3.61069 3.88755 3.95866 4.12825 4.18232 4.22750 4.28179 4.31117 4.33224 4.45668 4.47769 4.57681 4.64212 4.68208 4.75254 4.76782 4.81648 4.84700 4.89255 4.96571 5.01110 5.07073 5.09866 5.22229 5.31480 5.47469 5.52852 5.74566 5.93910 6.13108 6.30743 6.44467 6.69871 6.91277 7.10508 7.62456 8.59369 9.28902 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022815 B = 0.002438 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.952113 B =11481.484071 C =11991.430156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.596 5.596 3 C 0.130 3.870 4 C 0.137 3.863 5 H 0.067 0.933 6 C -0.137 4.137 7 C 0.160 3.840 8 N -0.630 5.630 9 C -0.227 4.227 10 H 0.089 0.911 11 C -0.074 4.074 12 N -0.959 5.959 13 Si 0.978 3.022 14 H -0.279 1.279 15 H -0.298 1.298 16 H -0.271 1.271 17 C 0.560 3.440 18 O -0.559 6.559 19 C -0.203 4.203 20 C -0.012 4.012 21 C -0.182 4.182 22 C 0.169 3.831 23 N -0.526 5.526 24 C 0.348 3.652 25 O -0.486 6.486 26 C -0.106 4.106 27 C 0.060 3.940 28 O -0.389 6.389 29 C 0.108 3.892 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.024 0.976 38 H 0.023 0.977 39 H 0.247 0.753 40 H 0.177 0.823 41 H 0.416 0.584 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.076 0.924 45 H 0.128 0.872 46 H 0.101 0.899 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.133 -20.849 7.193 32.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.328 5.328 3 C 0.006 3.994 4 C 0.031 3.969 5 H 0.084 0.916 6 C -0.175 4.175 7 C 0.034 3.966 8 N -0.357 5.357 9 C -0.355 4.355 10 H 0.106 0.894 11 C -0.266 4.266 12 N -0.608 5.608 13 Si 0.806 3.194 14 H -0.205 1.205 15 H -0.224 1.224 16 H -0.197 1.197 17 C 0.348 3.652 18 O -0.437 6.437 19 C -0.210 4.210 20 C -0.038 4.038 21 C -0.184 4.184 22 C 0.032 3.968 23 N -0.245 5.245 24 C 0.167 3.833 25 O -0.296 6.296 26 C -0.144 4.144 27 C -0.017 4.017 28 O -0.308 6.308 29 C 0.031 3.969 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.043 0.957 38 H 0.041 0.959 39 H 0.055 0.945 40 H 0.195 0.805 41 H 0.277 0.723 42 H 0.128 0.872 43 H 0.113 0.887 44 H 0.095 0.905 45 H 0.146 0.854 46 H 0.118 0.882 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.699 -21.483 7.227 32.078 hybrid contribution 1.140 2.145 0.385 2.459 sum -21.559 -19.338 7.613 29.945 Atomic orbital electron populations 1.22330 0.76700 1.04864 1.03654 1.47702 1.08540 1.04363 1.72229 1.21479 0.96856 0.83975 0.97072 1.22681 0.91981 0.87850 0.94398 0.91563 1.23556 0.99188 0.95978 0.98746 1.22047 0.97230 0.88998 0.88291 1.46330 1.33937 1.34809 1.20584 1.19380 1.15333 1.03415 0.97385 0.89366 1.25694 1.00826 1.02283 0.97845 1.70033 1.31545 1.41687 1.17510 0.85155 0.77707 0.79119 0.77398 1.20508 1.22389 1.19679 1.18198 0.86563 0.83865 0.76601 1.90856 1.15636 1.87295 1.49926 1.20845 0.99808 0.95589 1.04739 1.21915 0.89818 0.96995 0.95051 1.21367 1.01905 0.94712 1.00412 1.21455 0.89388 0.96798 0.89141 1.67096 1.08642 1.21146 1.27651 1.19146 0.85358 0.87536 0.91221 1.84774 1.27621 1.83786 1.33369 1.21309 0.97310 0.91123 1.04624 1.22881 0.93731 1.01743 0.83307 1.88115 1.90653 1.23383 1.28608 1.21595 0.92103 0.83096 1.00134 0.90008 0.89811 0.89009 0.92819 0.89209 0.91629 0.90692 0.95728 0.95895 0.94460 0.80536 0.72296 0.87153 0.88665 0.90536 0.85397 0.88152 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 9.08 127.77 1.16 2.09 16 2 N -0.60 -15.50 2.75 -850.55 -2.34 -17.84 16 3 C 0.13 4.46 5.44 86.38 0.47 4.93 16 4 C 0.14 5.44 4.59 45.10 0.21 5.65 16 5 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 6 C -0.14 -5.68 7.21 31.25 0.23 -5.46 16 7 C 0.16 8.24 7.38 86.43 0.64 8.88 16 8 N -0.63 -33.25 3.58 -690.82 -2.47 -35.72 16 9 C -0.23 -12.93 10.51 84.03 0.88 -12.04 16 10 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 11 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 12 N -0.96 -60.69 11.57 21.65 0.25 -60.44 16 13 Si 0.98 47.07 29.55 68.60 2.03 49.10 16 14 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 15 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 16 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 17 C 0.56 17.32 6.59 86.69 0.57 17.89 16 18 O -0.56 -23.68 14.15 6.02 0.09 -23.59 16 19 C -0.20 -4.96 4.96 -19.94 -0.10 -5.06 16 20 C -0.01 -0.20 7.50 22.75 0.17 -0.03 16 21 C -0.18 -2.60 5.80 -19.85 -0.12 -2.71 16 22 C 0.17 3.01 6.68 42.51 0.28 3.29 16 23 N -0.53 -12.64 10.23 -295.95 -3.03 -15.67 16 24 C 0.35 9.25 7.75 85.17 0.66 9.91 16 25 O -0.49 -13.72 12.58 -77.29 -0.97 -14.70 16 26 C -0.11 -1.17 6.23 29.90 0.19 -0.98 16 27 C 0.06 0.40 6.84 71.96 0.49 0.89 16 28 O -0.39 -4.45 10.81 -148.98 -1.61 -6.06 16 29 C 0.11 0.90 6.66 71.20 0.47 1.38 16 30 H 0.08 0.81 7.03 -2.39 -0.02 0.80 16 31 H 0.08 0.90 6.22 -2.39 -0.01 0.88 16 32 H 0.09 1.08 7.90 -2.39 -0.02 1.06 16 33 H 0.05 2.31 7.30 -2.38 -0.02 2.29 16 34 H 0.09 2.69 7.96 -2.39 -0.02 2.67 16 35 H 0.07 3.08 6.25 -2.39 -0.01 3.07 16 36 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.02 1.43 7.46 -2.39 -0.02 1.42 16 38 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.18 1.82 6.21 -2.91 -0.02 1.80 16 41 H 0.42 7.58 9.06 -74.06 -0.67 6.91 16 42 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.08 0.28 8.07 -2.39 -0.02 0.26 16 45 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 46 H 0.10 0.32 8.14 -2.39 -0.02 0.31 16 47 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -87.08 380.01 -1.04 -88.12 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.34 Total: 12.07 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: 6.67 Total: 24.72 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -7.59 Total: -129.67 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -2.50 Total: -44.34 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -87.08 -1.04 -88.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085919248.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.194 kcal (2) G-P(sol) polarization free energy of solvation -87.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds