Wall clock time and date at job start Wed Apr 1 2020 05:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35506 * 117.00201 * 2 1 4 4 C 1.39213 * 120.89992 * 0.02663 * 3 2 1 5 5 C 1.37904 * 119.39146 * 179.97438 * 4 3 2 6 6 N 1.32075 * 121.29108 * 359.97438 * 5 4 3 7 7 C 1.32184 * 121.97773 * 359.72548 * 6 5 4 8 8 O 1.35429 * 119.77651 * 180.29338 * 7 6 5 9 9 C 1.42894 * 117.00173 * 0.24250 * 8 7 6 10 10 C 1.40290 * 120.44341 * 0.53731 * 7 6 5 11 11 C 1.47237 * 120.65060 * 179.75698 * 10 7 6 12 12 O 1.21623 * 119.99443 * 269.71896 * 11 10 7 13 13 N 1.34775 * 120.00289 * 89.72163 * 11 10 7 14 14 C 1.46498 * 119.99972 * 180.02562 * 13 11 10 15 15 H 1.08998 * 110.56191 * 32.09635 * 14 13 11 16 16 C 1.55877 * 110.06531 * 268.80145 * 14 13 11 17 17 C 1.55846 * 102.97150 * 240.84669 * 16 14 13 18 18 H 1.09002 * 115.56047 * 159.69072 * 17 16 14 19 19 C 1.55848 * 105.74102 * 288.86911 * 17 16 14 20 20 C 1.54853 * 103.44532 * 72.01260 * 19 17 16 21 21 C 1.55847 * 103.44638 * 359.97438 * 20 19 17 22 22 H 1.08997 * 115.56393 * 158.81308 * 21 20 19 23 23 N 1.50240 * 101.04996 * 33.81862 * 17 16 14 24 24 C 1.36936 * 130.84094 * 125.33662 * 23 17 16 25 25 H 1.07994 * 120.00055 * 179.97438 * 24 23 17 26 26 C 1.38810 * 119.99700 * 359.97438 * 24 23 17 27 27 N 1.31624 * 120.00368 * 0.02562 * 26 24 23 28 28 Si 1.86804 * 120.00009 * 180.02562 * 26 24 23 29 29 H 1.48498 * 109.46852 * 59.99864 * 28 26 24 30 30 H 1.48501 * 109.47078 * 180.02562 * 28 26 24 31 31 H 1.48506 * 109.46941 * 299.99873 * 28 26 24 32 32 H 1.09006 * 109.47286 * 59.99561 * 1 2 3 33 33 H 1.08997 * 109.47228 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46855 * 299.99862 * 1 2 3 35 35 H 1.08001 * 120.30541 * 359.97438 * 4 3 2 36 36 H 1.08002 * 119.35279 * 179.97438 * 5 4 3 37 37 H 1.08998 * 109.47019 * 180.02562 * 9 8 7 38 38 H 1.09004 * 109.47389 * 300.00390 * 9 8 7 39 39 H 1.08999 * 109.47148 * 59.99890 * 9 8 7 40 40 H 0.97000 * 119.99820 * 359.97438 * 13 11 10 41 41 H 1.09006 * 110.09627 * 122.86684 * 16 14 13 42 42 H 1.09001 * 111.60505 * 359.53768 * 16 14 13 43 43 H 1.09000 * 110.62572 * 190.49964 * 19 17 16 44 44 H 1.09000 * 110.62759 * 313.51846 * 19 17 16 45 45 H 1.08997 * 110.62526 * 241.50943 * 20 19 17 46 46 H 1.09000 * 110.76127 * 118.55016 * 20 19 17 47 47 H 0.96994 * 120.00344 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3045 2.3867 0.0006 5 6 1.9627 3.5985 0.0011 6 7 3.2819 3.6626 0.0016 7 6 4.0355 2.5766 0.0069 8 8 5.3847 2.6942 0.0132 9 6 5.9204 4.0189 0.0190 10 6 3.4471 1.3030 0.0011 11 6 4.2822 0.0904 0.0016 12 8 4.6275 -0.4106 -1.0515 13 7 4.6639 -0.4645 1.1691 14 6 5.4953 -1.6707 1.1696 15 1 6.1595 -1.6782 0.3054 16 6 4.5935 -2.9417 1.1997 17 6 5.0164 -3.6394 2.5275 18 1 4.2986 -4.3521 2.9337 19 6 6.4489 -4.1984 2.2737 20 6 7.3325 -2.9270 2.2495 21 6 6.3135 -1.7728 2.4913 22 1 6.7380 -0.8415 2.8661 23 7 5.3207 -2.4500 3.3935 24 6 4.8410 -2.0931 4.6255 25 1 5.1857 -1.1846 5.0967 26 6 3.9117 -2.8992 5.2685 27 7 3.4920 -4.0068 4.6944 28 14 3.2568 -2.4121 6.9488 29 1 2.5823 -1.0925 6.8536 30 1 2.2848 -3.4329 7.4162 31 1 4.3832 -2.3239 7.9126 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8901 35 1 0.2250 2.3529 0.0006 36 1 1.3882 4.5130 0.0011 37 1 7.0093 3.9705 0.0233 38 1 5.5841 4.5508 -0.8711 39 1 5.5763 4.5461 0.9088 40 1 4.3888 -0.0647 2.0089 41 1 4.8155 -3.5789 0.3435 42 1 3.5350 -2.6824 1.2224 43 1 6.7517 -4.8611 3.0845 44 1 6.4948 -4.7163 1.3157 45 1 7.8167 -2.8143 1.2795 46 1 8.0751 -2.9573 3.0469 47 1 2.8424 -4.5698 5.1436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097519869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:25 Heat of formation + Delta-G solvation = -17.919903 kcal Electronic energy + Delta-G solvation = -31990.617231 eV Core-core repulsion = 27755.160291 eV Total energy + Delta-G solvation = -4235.456940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.14819 -39.44044 -39.26617 -37.99750 -37.39251 -33.59773 -32.51820 -31.94037 -30.90165 -29.05856 -28.72669 -28.09930 -27.67216 -26.91026 -24.63069 -24.04151 -22.61746 -21.53423 -20.03292 -19.71386 -19.04041 -18.62959 -17.78241 -17.26400 -16.93790 -16.59979 -16.37758 -15.75765 -15.61707 -15.29677 -14.83839 -14.71949 -14.16688 -14.04575 -13.92578 -13.57379 -13.42952 -13.24867 -13.04753 -12.66284 -12.00768 -11.98351 -11.84180 -11.76131 -11.61336 -11.27658 -11.14219 -11.05924 -10.91038 -10.86981 -10.45726 -10.31160 -10.21014 -10.09279 -9.85074 -9.59023 -9.17232 -9.08579 -9.04335 -8.92520 -8.71949 -8.30494 -6.90229 -5.70844 -3.09533 0.82850 1.15591 2.53680 3.01130 3.32827 3.37082 3.41865 3.42743 3.46857 3.75091 4.19164 4.43245 4.48368 4.79904 4.91875 4.92984 4.98355 5.14489 5.19562 5.20529 5.32661 5.37589 5.42119 5.44765 5.56364 5.71260 5.73729 5.79328 5.92074 5.93965 6.11641 6.19395 6.22469 6.39893 6.50612 6.56562 6.68521 6.81771 6.90151 6.97006 7.02882 7.06037 7.21932 7.41268 7.50701 7.64628 7.83459 8.12086 8.21718 8.73589 9.10828 9.73889 10.56128 11.37941 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009957 B = 0.004023 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.552188 B = 6958.766944 C = 7734.782878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.292 6.292 3 C 0.236 3.764 4 C -0.301 4.301 5 C 0.186 3.814 6 N -0.563 5.563 7 C 0.385 3.615 8 O -0.294 6.294 9 C 0.041 3.959 10 C -0.230 4.230 11 C 0.584 3.416 12 O -0.543 6.543 13 N -0.691 5.691 14 C 0.130 3.870 15 H 0.081 0.919 16 C -0.140 4.140 17 C 0.153 3.847 18 H 0.152 0.848 19 C -0.138 4.138 20 C -0.128 4.128 21 C 0.125 3.875 22 H 0.087 0.913 23 N -0.591 5.591 24 C -0.212 4.212 25 H 0.077 0.923 26 C -0.010 4.010 27 N -0.920 5.920 28 Si 0.913 3.087 29 H -0.287 1.287 30 H -0.290 1.290 31 H -0.286 1.286 32 H 0.060 0.940 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.146 0.854 36 H 0.165 0.835 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.402 0.598 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.056 0.944 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.373 13.213 -9.477 16.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.201 6.201 3 C 0.180 3.820 4 C -0.322 4.322 5 C 0.031 3.969 6 N -0.291 5.291 7 C 0.206 3.794 8 O -0.199 6.199 9 C -0.054 4.054 10 C -0.237 4.237 11 C 0.368 3.632 12 O -0.421 6.421 13 N -0.339 5.339 14 C 0.024 3.976 15 H 0.099 0.901 16 C -0.180 4.180 17 C 0.046 3.954 18 H 0.169 0.831 19 C -0.177 4.177 20 C -0.168 4.168 21 C 0.017 3.983 22 H 0.105 0.895 23 N -0.312 5.312 24 C -0.340 4.340 25 H 0.094 0.906 26 C -0.206 4.206 27 N -0.568 5.568 28 Si 0.744 3.256 29 H -0.214 1.214 30 H -0.216 1.216 31 H -0.213 1.213 32 H 0.078 0.922 33 H 0.126 0.874 34 H 0.081 0.919 35 H 0.164 0.836 36 H 0.182 0.818 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.236 0.764 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.604 13.144 -9.923 16.673 hybrid contribution -1.224 0.119 1.268 1.767 sum -3.828 13.262 -8.655 16.293 Atomic orbital electron populations 1.23243 0.76993 1.05025 1.01639 1.86149 1.22398 1.25401 1.86166 1.18887 0.89959 0.85282 0.87827 1.21975 1.01759 0.92492 1.16006 1.22221 0.88475 0.97225 0.89019 1.67397 1.07952 1.30384 1.23328 1.19319 0.84471 0.87492 0.88103 1.86267 1.15320 1.31748 1.86571 1.22932 0.98712 0.81205 1.02556 1.19050 0.91489 0.93856 1.19345 1.17351 0.79193 0.82236 0.84439 1.90745 1.56433 1.63463 1.31479 1.45938 1.51755 1.28551 1.07696 1.22877 0.92248 0.83564 0.98939 0.90119 1.23596 0.99195 0.96073 0.99178 1.23739 0.94225 0.90624 0.86783 0.83145 1.23043 0.99132 0.96349 0.99189 1.22879 0.97512 0.96950 0.99434 1.23161 0.90653 0.95182 0.89314 0.89456 1.46534 1.45787 1.22554 1.16307 1.18951 1.18293 1.05203 0.91541 0.90561 1.24672 0.99925 0.97216 0.98744 1.69459 1.35026 1.14375 1.37895 0.86173 0.78415 0.77232 0.83769 1.21418 1.21631 1.21314 0.92161 0.87366 0.91883 0.83593 0.81768 0.88331 0.92100 0.91962 0.76381 0.93018 0.91902 0.92649 0.93335 0.92992 0.92498 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.84 101.05 0.99 1.24 16 2 O -0.29 -4.43 10.03 -18.21 -0.18 -4.61 16 3 C 0.24 3.49 6.74 -38.32 -0.26 3.23 16 4 C -0.30 -3.28 9.09 -39.34 -0.36 -3.63 16 5 C 0.19 1.94 11.15 -17.57 -0.20 1.74 16 6 N -0.56 -7.38 9.20 -13.06 -0.12 -7.50 16 7 C 0.39 5.96 7.51 -16.63 -0.12 5.83 16 8 O -0.29 -4.42 9.93 -17.98 -0.18 -4.60 16 9 C 0.04 0.43 10.38 101.05 1.05 1.47 16 10 C -0.23 -3.93 5.66 -104.57 -0.59 -4.52 16 11 C 0.58 11.58 6.42 -12.60 -0.08 11.50 16 12 O -0.54 -12.37 16.75 5.26 0.09 -12.29 16 13 N -0.69 -13.51 5.07 -52.02 -0.26 -13.77 16 14 C 0.13 2.61 2.84 -64.91 -0.18 2.42 16 15 H 0.08 1.63 7.23 -51.93 -0.38 1.26 16 16 C -0.14 -3.01 6.28 -23.68 -0.15 -3.16 16 17 C 0.15 3.56 4.67 -62.80 -0.29 3.26 16 18 H 0.15 3.99 5.52 -51.93 -0.29 3.70 16 19 C -0.14 -2.79 6.46 -24.23 -0.16 -2.95 16 20 C -0.13 -2.40 6.44 -24.23 -0.16 -2.56 16 21 C 0.13 2.55 5.06 -62.81 -0.32 2.23 16 22 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 23 N -0.59 -14.29 2.98 -145.82 -0.43 -14.72 16 24 C -0.21 -5.61 10.59 -15.06 -0.16 -5.77 16 25 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 26 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 27 N -0.92 -25.86 10.47 55.49 0.58 -25.28 16 28 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 29 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 30 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 31 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 32 H 0.06 0.44 7.71 -51.93 -0.40 0.04 16 33 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.51 7.71 -51.93 -0.40 0.11 16 35 H 0.15 1.10 6.45 -52.49 -0.34 0.76 16 36 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 39 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 40 H 0.40 7.83 8.64 -40.82 -0.35 7.47 16 41 H 0.05 1.04 7.85 -51.93 -0.41 0.63 16 42 H 0.06 1.47 8.01 -51.93 -0.42 1.05 16 43 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.05 0.88 7.85 -51.93 -0.41 0.48 16 45 H 0.05 0.87 7.82 -51.93 -0.41 0.46 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 385.83 15.07 5.81 5.81 Total: -1.00 -33.43 385.83 -7.51 -40.95 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.71 Total: 9.52 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -1.08 Total: 9.98 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.24 Total: -61.28 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.27 Total: -21.49 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.43 -7.51 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097519869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.027 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds