Wall clock time and date at job start Wed Apr 1 2020 05:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35506 * 117.00201 * 2 1 4 4 C 1.39213 * 120.89992 * 0.02663 * 3 2 1 5 5 C 1.37904 * 119.39146 * 179.97438 * 4 3 2 6 6 N 1.32075 * 121.29108 * 359.97438 * 5 4 3 7 7 C 1.32184 * 121.97773 * 359.72548 * 6 5 4 8 8 O 1.35429 * 119.77651 * 180.29338 * 7 6 5 9 9 C 1.42894 * 117.00173 * 0.24250 * 8 7 6 10 10 C 1.40290 * 120.44341 * 0.53731 * 7 6 5 11 11 C 1.47237 * 120.65060 * 179.75698 * 10 7 6 12 12 O 1.21623 * 119.99443 * 269.71896 * 11 10 7 13 13 N 1.34775 * 120.00289 * 89.72163 * 11 10 7 14 14 C 1.46498 * 119.99972 * 180.02562 * 13 11 10 15 15 H 1.08998 * 110.56191 * 32.09635 * 14 13 11 16 16 C 1.55877 * 110.06531 * 268.80145 * 14 13 11 17 17 C 1.55846 * 102.97150 * 240.84669 * 16 14 13 18 18 H 1.09002 * 115.56047 * 159.69072 * 17 16 14 19 19 C 1.55848 * 105.74102 * 288.86911 * 17 16 14 20 20 C 1.54853 * 103.44532 * 72.01260 * 19 17 16 21 21 C 1.55847 * 103.44638 * 359.97438 * 20 19 17 22 22 H 1.08997 * 115.56393 * 158.81308 * 21 20 19 23 23 N 1.50240 * 101.04996 * 33.81862 * 17 16 14 24 24 C 1.36936 * 130.84094 * 125.33662 * 23 17 16 25 25 H 1.07994 * 120.00055 * 179.97438 * 24 23 17 26 26 C 1.38810 * 119.99700 * 359.97438 * 24 23 17 27 27 N 1.31624 * 120.00368 * 0.02562 * 26 24 23 28 28 Si 1.86804 * 120.00009 * 180.02562 * 26 24 23 29 29 H 1.48498 * 109.46852 * 59.99864 * 28 26 24 30 30 H 1.48501 * 109.47078 * 180.02562 * 28 26 24 31 31 H 1.48506 * 109.46941 * 299.99873 * 28 26 24 32 32 H 1.09006 * 109.47286 * 59.99561 * 1 2 3 33 33 H 1.08997 * 109.47228 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46855 * 299.99862 * 1 2 3 35 35 H 1.08001 * 120.30541 * 359.97438 * 4 3 2 36 36 H 1.08002 * 119.35279 * 179.97438 * 5 4 3 37 37 H 1.08998 * 109.47019 * 180.02562 * 9 8 7 38 38 H 1.09004 * 109.47389 * 300.00390 * 9 8 7 39 39 H 1.08999 * 109.47148 * 59.99890 * 9 8 7 40 40 H 0.97000 * 119.99820 * 359.97438 * 13 11 10 41 41 H 1.09006 * 110.09627 * 122.86684 * 16 14 13 42 42 H 1.09001 * 111.60505 * 359.53768 * 16 14 13 43 43 H 1.09000 * 110.62572 * 190.49964 * 19 17 16 44 44 H 1.09000 * 110.62759 * 313.51846 * 19 17 16 45 45 H 1.08997 * 110.62526 * 241.50943 * 20 19 17 46 46 H 1.09000 * 110.76127 * 118.55016 * 20 19 17 47 47 H 0.96994 * 120.00344 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3045 2.3867 0.0006 5 6 1.9627 3.5985 0.0011 6 7 3.2819 3.6626 0.0016 7 6 4.0355 2.5766 0.0069 8 8 5.3847 2.6942 0.0132 9 6 5.9204 4.0189 0.0190 10 6 3.4471 1.3030 0.0011 11 6 4.2822 0.0904 0.0016 12 8 4.6275 -0.4106 -1.0515 13 7 4.6639 -0.4645 1.1691 14 6 5.4953 -1.6707 1.1696 15 1 6.1595 -1.6782 0.3054 16 6 4.5935 -2.9417 1.1997 17 6 5.0164 -3.6394 2.5275 18 1 4.2986 -4.3521 2.9337 19 6 6.4489 -4.1984 2.2737 20 6 7.3325 -2.9270 2.2495 21 6 6.3135 -1.7728 2.4913 22 1 6.7380 -0.8415 2.8661 23 7 5.3207 -2.4500 3.3935 24 6 4.8410 -2.0931 4.6255 25 1 5.1857 -1.1846 5.0967 26 6 3.9117 -2.8992 5.2685 27 7 3.4920 -4.0068 4.6944 28 14 3.2568 -2.4121 6.9488 29 1 2.5823 -1.0925 6.8536 30 1 2.2848 -3.4329 7.4162 31 1 4.3832 -2.3239 7.9126 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8901 35 1 0.2250 2.3529 0.0006 36 1 1.3882 4.5130 0.0011 37 1 7.0093 3.9705 0.0233 38 1 5.5841 4.5508 -0.8711 39 1 5.5763 4.5461 0.9088 40 1 4.3888 -0.0647 2.0089 41 1 4.8155 -3.5789 0.3435 42 1 3.5350 -2.6824 1.2224 43 1 6.7517 -4.8611 3.0845 44 1 6.4948 -4.7163 1.3157 45 1 7.8167 -2.8143 1.2795 46 1 8.0751 -2.9573 3.0469 47 1 2.8424 -4.5698 5.1436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097519869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:24 Heat of formation + Delta-G solvation = -42.600901 kcal Electronic energy + Delta-G solvation = -31991.687480 eV Core-core repulsion = 27755.160291 eV Total energy + Delta-G solvation = -4236.527188 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.21032 -41.05557 -40.26357 -39.58918 -38.36315 -35.27118 -34.41543 -33.06643 -31.84702 -30.95745 -30.39291 -29.29143 -28.91759 -27.78062 -26.19887 -25.56290 -23.58307 -23.02627 -21.54864 -21.49973 -20.37925 -19.99123 -18.90686 -18.76012 -18.55543 -17.66564 -17.52835 -17.04952 -16.74995 -16.67502 -16.20578 -16.01034 -15.85129 -15.32122 -15.22407 -15.02460 -14.67037 -14.49860 -14.26728 -13.83435 -13.73035 -13.62461 -12.92648 -12.86215 -12.80312 -12.78244 -12.67347 -12.64718 -12.47885 -12.16394 -12.12369 -11.98369 -11.90689 -11.71844 -11.47578 -11.08880 -10.94063 -10.87880 -10.59955 -10.08571 -9.96002 -9.71808 -8.85883 -7.74101 -5.14164 -0.16191 0.15927 1.48090 1.50043 1.52619 1.56045 1.61857 2.22823 2.42320 2.50780 2.58517 3.29807 3.38206 3.44904 3.56813 3.78443 3.92104 4.00776 4.08240 4.17430 4.26117 4.26523 4.32764 4.39036 4.43810 4.45355 4.47703 4.56103 4.63316 4.68387 4.70156 4.74920 4.82715 4.87559 4.90790 5.08414 5.11115 5.16551 5.19040 5.37930 5.51304 5.59294 5.70502 5.90356 6.05157 6.10669 6.27875 6.55550 6.69614 7.07070 7.19652 7.73252 8.59874 9.32910 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009957 B = 0.004023 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.552188 B = 6958.766944 C = 7734.782878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.330 6.330 3 C 0.222 3.778 4 C -0.288 4.288 5 C 0.194 3.806 6 N -0.565 5.565 7 C 0.378 3.622 8 O -0.319 6.319 9 C 0.037 3.963 10 C -0.272 4.272 11 C 0.587 3.413 12 O -0.582 6.582 13 N -0.690 5.690 14 C 0.139 3.861 15 H 0.085 0.915 16 C -0.130 4.130 17 C 0.141 3.859 18 H 0.117 0.883 19 C -0.130 4.130 20 C -0.119 4.119 21 C 0.127 3.873 22 H 0.099 0.901 23 N -0.609 5.609 24 C -0.217 4.217 25 H 0.082 0.918 26 C -0.064 4.064 27 N -0.946 5.946 28 Si 0.973 3.027 29 H -0.281 1.281 30 H -0.298 1.298 31 H -0.282 1.282 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.185 0.815 36 H 0.214 0.786 37 H 0.119 0.881 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.401 0.599 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.041 0.959 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.062 0.938 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.802 15.762 -9.731 18.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.240 6.240 3 C 0.167 3.833 4 C -0.309 4.309 5 C 0.040 3.960 6 N -0.293 5.293 7 C 0.199 3.801 8 O -0.226 6.226 9 C -0.057 4.057 10 C -0.279 4.279 11 C 0.373 3.627 12 O -0.463 6.463 13 N -0.337 5.337 14 C 0.032 3.968 15 H 0.103 0.897 16 C -0.170 4.170 17 C 0.035 3.965 18 H 0.134 0.866 19 C -0.169 4.169 20 C -0.158 4.158 21 C 0.020 3.980 22 H 0.117 0.883 23 N -0.330 5.330 24 C -0.346 4.346 25 H 0.099 0.901 26 C -0.257 4.257 27 N -0.596 5.596 28 Si 0.803 3.197 29 H -0.207 1.207 30 H -0.224 1.224 31 H -0.208 1.208 32 H 0.105 0.895 33 H 0.129 0.871 34 H 0.098 0.902 35 H 0.202 0.798 36 H 0.231 0.769 37 H 0.137 0.863 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.235 0.765 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.018 15.723 -10.182 18.973 hybrid contribution -1.158 -0.612 1.297 1.843 sum -4.176 15.110 -8.885 18.019 Atomic orbital electron populations 1.23568 0.74511 1.06038 1.03714 1.86097 1.25179 1.26436 1.86296 1.19173 0.89526 0.86470 0.88128 1.22376 1.03430 0.90982 1.14122 1.23115 0.87765 0.98928 0.86224 1.67534 1.09157 1.29081 1.23560 1.19388 0.84894 0.87498 0.88346 1.86224 1.15554 1.34225 1.86555 1.23186 0.99806 0.79641 1.03106 1.19057 0.92482 0.93145 1.23222 1.17795 0.78558 0.82728 0.83572 1.90695 1.58037 1.64971 1.32580 1.45936 1.51662 1.28278 1.07832 1.22741 0.91935 0.83216 0.98894 0.89743 1.23443 0.97747 0.96997 0.98809 1.23580 0.95417 0.90352 0.87152 0.86562 1.22937 0.97179 0.96977 0.99842 1.22831 0.96831 0.94907 1.01242 1.23335 0.90321 0.96030 0.88323 0.88340 1.46704 1.46746 1.23388 1.16199 1.19290 1.17823 1.05082 0.92371 0.90061 1.25403 1.00798 0.97563 1.01941 1.69710 1.35616 1.15332 1.38930 0.85219 0.77607 0.76736 0.80137 1.20719 1.22411 1.20820 0.89511 0.87132 0.90204 0.79795 0.76907 0.86306 0.91478 0.91373 0.76495 0.91796 0.94727 0.93970 0.91078 0.90146 0.91942 0.94465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.84 113.37 1.12 1.38 16 2 O -0.33 -10.04 10.03 -88.07 -0.88 -10.92 16 3 C 0.22 6.43 6.74 23.09 0.16 6.58 16 4 C -0.29 -5.40 9.09 22.43 0.20 -5.20 16 5 C 0.19 3.34 11.15 84.58 0.94 4.28 16 6 N -0.57 -13.61 9.20 -308.27 -2.84 -16.45 16 7 C 0.38 11.50 7.51 85.14 0.64 12.14 16 8 O -0.32 -9.57 9.93 -87.25 -0.87 -10.44 16 9 C 0.04 0.72 10.38 113.37 1.18 1.89 16 10 C -0.27 -9.36 5.66 -19.83 -0.11 -9.47 16 11 C 0.59 23.96 6.42 86.61 0.56 24.52 16 12 O -0.58 -27.34 16.75 -4.10 -0.07 -27.41 16 13 N -0.69 -27.59 5.07 -436.75 -2.21 -29.80 16 14 C 0.14 5.58 2.84 46.95 0.13 5.72 16 15 H 0.08 3.38 7.23 -2.39 -0.02 3.36 16 16 C -0.13 -5.70 6.28 32.57 0.20 -5.49 16 17 C 0.14 6.73 4.67 46.23 0.22 6.95 16 18 H 0.12 6.45 5.52 -2.39 -0.01 6.44 16 19 C -0.13 -5.20 6.46 32.21 0.21 -4.99 16 20 C -0.12 -4.25 6.44 32.21 0.21 -4.04 16 21 C 0.13 5.09 5.06 46.20 0.23 5.33 16 22 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 23 N -0.61 -29.75 2.98 -615.26 -1.83 -31.58 16 24 C -0.22 -11.60 10.59 84.03 0.89 -10.71 16 25 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 26 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 27 N -0.95 -54.99 10.47 21.65 0.23 -54.76 16 28 Si 0.97 44.81 29.55 68.60 2.03 46.84 16 29 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 30 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 31 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 32 H 0.09 1.05 7.71 -2.38 -0.02 1.03 16 33 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.08 1.12 7.71 -2.38 -0.02 1.10 16 35 H 0.18 1.92 6.45 -2.91 -0.02 1.90 16 36 H 0.21 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 1.20 8.10 -2.38 -0.02 1.19 16 39 H 0.07 1.23 8.11 -2.39 -0.02 1.21 16 40 H 0.40 16.08 8.64 -92.71 -0.80 15.27 16 41 H 0.06 2.60 7.85 -2.38 -0.02 2.58 16 42 H 0.03 1.68 8.01 -2.39 -0.02 1.66 16 43 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.07 2.49 7.85 -2.39 -0.02 2.47 16 45 H 0.08 2.45 7.82 -2.39 -0.02 2.44 16 46 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -75.94 385.83 0.99 -74.95 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.21 Total: 33.77 kcal Atomic # 6 Polarization: 18.57 SS G_CDS: 7.24 Total: 25.81 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -6.66 Total: -132.60 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -1.82 Total: -48.77 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -75.94 0.99 -74.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097519869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.346 kcal (2) G-P(sol) polarization free energy of solvation -75.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds