Wall clock time and date at job start Wed Apr 1 2020 05:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 116.99688 * 2 1 4 4 C 1.38750 * 120.05883 * 0.02562 * 3 2 1 5 5 C 1.38117 * 119.94586 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.05545 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11099 * 359.97411 * 6 5 4 8 8 C 1.38173 * 120.05560 * 0.05153 * 7 6 5 9 9 C 1.50693 * 120.02483 * 179.97438 * 8 7 6 10 10 N 1.46502 * 112.85181 * 106.49662 * 9 8 7 11 11 C 1.34785 * 119.99806 * 309.66405 * 10 9 8 12 12 O 1.21585 * 119.99587 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00031 * 180.02562 * 11 10 9 14 14 C 1.46491 * 119.99905 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47234 * 180.02562 * 14 13 11 16 16 O 1.21295 * 120.00029 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00124 * 180.02562 * 15 14 13 18 18 C 1.37103 * 119.99982 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99592 * 359.97438 * 18 17 15 20 20 C 1.38944 * 119.99935 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99902 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00175 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47225 * 90.00030 * 22 20 18 24 24 H 1.48500 * 109.47185 * 210.00522 * 22 20 18 25 25 H 1.48498 * 109.46950 * 330.00399 * 22 20 18 26 26 C 1.53776 * 113.61997 * 335.18379 * 9 8 7 27 27 C 1.53776 * 87.08452 * 220.02078 * 26 9 8 28 28 C 1.53778 * 87.08141 * 25.43345 * 27 26 9 29 29 H 1.08998 * 109.47223 * 299.99482 * 1 2 3 30 30 H 1.09001 * 109.47417 * 59.99353 * 1 2 3 31 31 H 1.09005 * 109.47383 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.02767 * 0.04009 * 4 3 2 33 33 H 1.08001 * 119.97789 * 180.24810 * 5 4 3 34 34 H 1.07997 * 119.94444 * 180.02562 * 6 5 4 35 35 H 1.07999 * 119.97318 * 180.02562 * 7 6 5 36 36 H 0.96997 * 120.00269 * 129.65768 * 10 9 8 37 37 H 0.97001 * 119.99844 * 359.97438 * 13 11 10 38 38 H 1.09002 * 109.47709 * 299.99990 * 14 13 11 39 39 H 1.09003 * 109.47125 * 60.00254 * 14 13 11 40 40 H 0.97001 * 119.99848 * 359.97438 * 17 15 14 41 41 H 0.97002 * 119.99948 * 179.97438 * 21 20 18 42 42 H 1.09003 * 113.61360 * 334.57146 * 26 9 8 43 43 H 1.09002 * 113.61474 * 105.47205 * 26 9 8 44 44 H 1.08998 * 113.61693 * 270.88327 * 27 26 9 45 45 H 1.09003 * 113.61133 * 139.98043 * 27 26 9 46 46 H 1.09002 * 113.61582 * 220.02206 * 28 27 26 47 47 H 1.09003 * 113.61646 * 89.11428 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9207 3.6048 0.0000 6 6 3.3019 3.6758 -0.0005 7 6 4.0559 2.5172 0.0000 8 6 3.4310 1.2848 0.0000 9 6 4.2537 0.0222 0.0000 10 7 4.2431 -0.6637 1.2945 11 6 4.5164 0.0215 2.4225 12 8 4.7723 1.2088 2.3656 13 7 4.5072 -0.6096 3.6133 14 6 4.8049 0.1351 4.8392 15 6 4.7296 -0.7949 6.0227 16 8 4.4540 -1.9646 5.8582 17 7 4.9676 -0.3267 7.2639 18 6 4.8987 -1.1727 8.3406 19 1 4.6533 -2.2142 8.1941 20 6 5.1435 -0.6898 9.6202 21 7 5.0769 -1.5006 10.6523 22 14 5.5673 1.1117 9.8736 23 1 4.3199 1.8883 10.0881 24 1 6.4475 1.2509 11.0615 25 1 6.2715 1.6282 8.6726 26 6 5.6615 0.2042 -0.5913 27 6 5.4725 -1.1677 -1.2599 28 6 3.9589 -0.9051 -1.1909 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 0.2128 2.3204 0.0016 33 1 1.3339 4.5114 0.0045 34 1 3.7921 4.6381 -0.0005 35 1 5.1344 2.5753 0.0000 36 1 4.0393 -1.6109 1.3398 37 1 4.3035 -1.5569 3.6585 38 1 5.8073 0.5581 4.7732 39 1 4.0787 0.9388 4.9615 40 1 5.1877 0.6088 7.3954 41 1 5.2482 -1.1636 11.5457 42 1 5.7341 1.0291 -1.3002 43 1 6.4518 0.2189 0.1592 44 1 5.7993 -2.0036 -0.6414 45 1 5.8616 -1.2150 -2.2770 46 1 3.3746 -1.7858 -0.9243 47 1 3.5660 -0.3834 -2.0636 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117432393.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:15 Heat of formation + Delta-G solvation = -39.896834 kcal Electronic energy + Delta-G solvation = -30910.545498 eV Core-core repulsion = 26674.135567 eV Total energy + Delta-G solvation = -4236.409931 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.10063 -39.64201 -38.75995 -37.93082 -37.20829 -34.40570 -33.64579 -32.93975 -31.76813 -31.25696 -30.15780 -27.75317 -27.46451 -25.94575 -25.13298 -24.12604 -22.08922 -21.85468 -20.86714 -19.65602 -19.24645 -18.77524 -18.17379 -17.94790 -16.59484 -16.11834 -15.92017 -15.78587 -15.57288 -15.30751 -15.14583 -14.78712 -14.57291 -14.38470 -14.05908 -13.88545 -13.82385 -13.60641 -13.10043 -12.75589 -12.57663 -12.44570 -12.35354 -12.13058 -12.09790 -11.98401 -11.63033 -11.36550 -11.22486 -11.21825 -11.08009 -10.64475 -10.62353 -10.49270 -10.04776 -9.98044 -9.67390 -9.04336 -8.79711 -8.73050 -8.58525 -8.27942 -8.18459 -6.38856 -3.91240 1.27792 1.44031 2.83974 3.01497 3.06166 3.13958 3.17511 3.44884 3.61899 3.74235 4.05429 4.33317 4.35363 4.48752 4.54490 4.65732 4.68063 4.77606 4.92451 4.96306 5.00083 5.13706 5.16481 5.25483 5.33239 5.41527 5.54032 5.54952 5.68052 5.71381 5.73427 5.84787 5.87968 5.89979 5.92121 5.94164 6.06911 6.28094 6.38244 6.53305 6.71326 6.74697 6.75671 7.15679 7.31143 7.47671 8.02985 8.30090 8.47284 8.83837 8.88592 9.32386 9.66707 10.73454 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.002603 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.025230 B =10753.682527 C =11187.725630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.309 6.309 3 C 0.140 3.860 4 C -0.218 4.218 5 C -0.080 4.080 6 C -0.163 4.163 7 C -0.032 4.032 8 C -0.103 4.103 9 C 0.226 3.774 10 N -0.721 5.721 11 C 0.707 3.293 12 O -0.586 6.586 13 N -0.727 5.727 14 C 0.129 3.871 15 C 0.439 3.561 16 O -0.579 6.579 17 N -0.578 5.578 18 C -0.309 4.309 19 H 0.121 0.879 20 C 0.045 3.955 21 N -0.876 5.876 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.267 1.267 26 C -0.144 4.144 27 C -0.142 4.142 28 C -0.124 4.124 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.397 0.603 37 H 0.406 0.594 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.374 0.626 41 H 0.275 0.725 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.183 7.292 -26.777 28.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.094 3.906 4 C -0.237 4.237 5 C -0.099 4.099 6 C -0.182 4.182 7 C -0.051 4.051 8 C -0.105 4.105 9 C 0.139 3.861 10 N -0.376 5.376 11 C 0.407 3.593 12 O -0.464 6.464 13 N -0.385 5.385 14 C 0.000 4.000 15 C 0.226 3.774 16 O -0.463 6.463 17 N -0.215 5.215 18 C -0.438 4.438 19 H 0.139 0.861 20 C -0.159 4.159 21 N -0.515 5.515 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.192 1.192 26 C -0.183 4.183 27 C -0.179 4.179 28 C -0.162 4.162 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.232 0.768 37 H 0.243 0.757 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.207 0.793 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.088 0.912 46 H 0.095 0.905 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.030 7.347 -26.636 28.085 hybrid contribution -0.217 0.754 0.754 1.088 sum -5.247 8.102 -25.883 27.624 Atomic orbital electron populations 1.23021 0.78914 1.03745 1.01093 1.86096 1.20782 1.26757 1.88550 1.18805 0.91594 0.84171 0.96034 1.21125 0.99675 0.92496 1.10406 1.20883 0.94739 0.96754 0.97505 1.21005 0.93834 0.98386 1.04940 1.20766 0.99956 0.90587 0.93784 1.18990 0.89868 0.95110 1.06560 1.19502 0.94376 0.89771 0.82489 1.44715 1.76411 1.12257 1.04207 1.15824 0.78262 0.85137 0.80110 1.90897 1.56106 1.13372 1.86033 1.44753 1.75433 1.14010 1.04300 1.20745 1.02066 0.94009 0.83150 1.19701 0.84833 0.88988 0.83928 1.90532 1.53518 1.17613 1.84667 1.42120 1.62262 1.10918 1.06248 1.19440 1.45639 0.95344 0.83354 0.86121 1.25057 0.97267 0.98436 0.95151 1.69621 1.47579 1.35185 0.99112 0.86673 0.79354 0.84596 0.78903 1.19421 1.20001 1.19193 1.23396 0.97219 0.97650 1.00038 1.22868 0.96179 0.97799 1.01095 1.23150 0.96716 0.99320 0.97035 0.92840 0.92952 0.88386 0.85884 0.86242 0.86173 0.85444 0.76798 0.75680 0.90036 0.90135 0.79258 0.91425 0.89258 0.90686 0.89988 0.91164 0.90535 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.44 9.16 -19.43 -0.18 -3.61 16 3 C 0.14 1.72 6.54 -39.22 -0.26 1.46 16 4 C -0.22 -2.44 9.04 -39.44 -0.36 -2.79 16 5 C -0.08 -0.87 10.04 -39.61 -0.40 -1.26 16 6 C -0.16 -1.86 10.04 -39.56 -0.40 -2.26 16 7 C -0.03 -0.41 7.61 -39.60 -0.30 -0.71 16 8 C -0.10 -1.31 3.88 -104.47 -0.41 -1.72 16 9 C 0.23 2.56 0.55 -132.16 -0.07 2.49 16 10 N -0.72 -9.08 5.22 -52.74 -0.28 -9.36 16 11 C 0.71 11.34 8.32 -86.92 -0.72 10.62 16 12 O -0.59 -10.77 14.05 5.29 0.07 -10.70 16 13 N -0.73 -12.13 5.53 -66.42 -0.37 -12.50 16 14 C 0.13 2.33 6.15 -5.20 -0.03 2.30 16 15 C 0.44 9.86 7.85 -10.98 -0.09 9.77 16 16 O -0.58 -14.83 15.24 5.54 0.08 -14.75 16 17 N -0.58 -13.66 5.09 -10.96 -0.06 -13.71 16 18 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 19 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 20 C 0.04 1.22 5.50 -17.47 -0.10 1.12 16 21 N -0.88 -25.22 13.96 55.50 0.77 -24.45 16 22 Si 0.88 19.24 27.74 -169.99 -4.71 14.53 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 26 C -0.14 -1.45 6.43 -25.92 -0.17 -1.62 16 27 C -0.14 -1.16 7.99 -25.92 -0.21 -1.37 16 28 C -0.12 -1.09 6.32 -25.92 -0.16 -1.26 16 29 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 30 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.12 1.11 6.30 -52.49 -0.33 0.78 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.13 1.54 6.82 -52.49 -0.36 1.18 16 36 H 0.40 4.26 8.64 -40.82 -0.35 3.91 16 37 H 0.41 6.69 7.45 -40.82 -0.30 6.38 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.37 7.85 5.76 -40.82 -0.24 7.61 16 41 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.09 0.80 7.24 -51.93 -0.38 0.43 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.65 8.11 -51.93 -0.42 0.22 16 47 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 LS Contribution 387.38 15.07 5.84 5.84 Total: -1.00 -33.96 387.38 -8.18 -42.14 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: -6.53 Total: 19.36 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -2.82 Total: 7.20 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.08 Total: -60.01 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.02 Total: -29.06 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.96 -8.18 -42.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117432393.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.242 kcal (2) G-P(sol) polarization free energy of solvation -33.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds