Wall clock time and date at job start Wed Apr 1 2020 05:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 116.99688 * 2 1 4 4 C 1.38750 * 120.05883 * 0.02562 * 3 2 1 5 5 C 1.38117 * 119.94586 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.05545 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11099 * 359.97411 * 6 5 4 8 8 C 1.38173 * 120.05560 * 0.05153 * 7 6 5 9 9 C 1.50693 * 120.02483 * 179.97438 * 8 7 6 10 10 N 1.46502 * 112.85181 * 106.49662 * 9 8 7 11 11 C 1.34785 * 119.99806 * 309.66405 * 10 9 8 12 12 O 1.21585 * 119.99587 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00031 * 180.02562 * 11 10 9 14 14 C 1.46491 * 119.99905 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47234 * 180.02562 * 14 13 11 16 16 O 1.21295 * 120.00029 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00124 * 180.02562 * 15 14 13 18 18 C 1.37103 * 119.99982 * 179.97438 * 17 15 14 19 19 H 1.08005 * 119.99592 * 359.97438 * 18 17 15 20 20 C 1.38944 * 119.99935 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99902 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00175 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47225 * 90.00030 * 22 20 18 24 24 H 1.48500 * 109.47185 * 210.00522 * 22 20 18 25 25 H 1.48498 * 109.46950 * 330.00399 * 22 20 18 26 26 C 1.53776 * 113.61997 * 335.18379 * 9 8 7 27 27 C 1.53776 * 87.08452 * 220.02078 * 26 9 8 28 28 C 1.53778 * 87.08141 * 25.43345 * 27 26 9 29 29 H 1.08998 * 109.47223 * 299.99482 * 1 2 3 30 30 H 1.09001 * 109.47417 * 59.99353 * 1 2 3 31 31 H 1.09005 * 109.47383 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.02767 * 0.04009 * 4 3 2 33 33 H 1.08001 * 119.97789 * 180.24810 * 5 4 3 34 34 H 1.07997 * 119.94444 * 180.02562 * 6 5 4 35 35 H 1.07999 * 119.97318 * 180.02562 * 7 6 5 36 36 H 0.96997 * 120.00269 * 129.65768 * 10 9 8 37 37 H 0.97001 * 119.99844 * 359.97438 * 13 11 10 38 38 H 1.09002 * 109.47709 * 299.99990 * 14 13 11 39 39 H 1.09003 * 109.47125 * 60.00254 * 14 13 11 40 40 H 0.97001 * 119.99848 * 359.97438 * 17 15 14 41 41 H 0.97002 * 119.99948 * 179.97438 * 21 20 18 42 42 H 1.09003 * 113.61360 * 334.57146 * 26 9 8 43 43 H 1.09002 * 113.61474 * 105.47205 * 26 9 8 44 44 H 1.08998 * 113.61693 * 270.88327 * 27 26 9 45 45 H 1.09003 * 113.61133 * 139.98043 * 27 26 9 46 46 H 1.09002 * 113.61582 * 220.02206 * 28 27 26 47 47 H 1.09003 * 113.61646 * 89.11428 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9207 3.6048 0.0000 6 6 3.3019 3.6758 -0.0005 7 6 4.0559 2.5172 0.0000 8 6 3.4310 1.2848 0.0000 9 6 4.2537 0.0222 0.0000 10 7 4.2431 -0.6637 1.2945 11 6 4.5164 0.0215 2.4225 12 8 4.7723 1.2088 2.3656 13 7 4.5072 -0.6096 3.6133 14 6 4.8049 0.1351 4.8392 15 6 4.7296 -0.7949 6.0227 16 8 4.4540 -1.9646 5.8582 17 7 4.9676 -0.3267 7.2639 18 6 4.8987 -1.1727 8.3406 19 1 4.6533 -2.2142 8.1941 20 6 5.1435 -0.6898 9.6202 21 7 5.0769 -1.5006 10.6523 22 14 5.5673 1.1117 9.8736 23 1 4.3199 1.8883 10.0881 24 1 6.4475 1.2509 11.0615 25 1 6.2715 1.6282 8.6726 26 6 5.6615 0.2042 -0.5913 27 6 5.4725 -1.1677 -1.2599 28 6 3.9589 -0.9051 -1.1909 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 0.2128 2.3204 0.0016 33 1 1.3339 4.5114 0.0045 34 1 3.7921 4.6381 -0.0005 35 1 5.1344 2.5753 0.0000 36 1 4.0393 -1.6109 1.3398 37 1 4.3035 -1.5569 3.6585 38 1 5.8073 0.5581 4.7732 39 1 4.0787 0.9388 4.9615 40 1 5.1877 0.6088 7.3954 41 1 5.2482 -1.1636 11.5457 42 1 5.7341 1.0291 -1.3002 43 1 6.4518 0.2189 0.1592 44 1 5.7993 -2.0036 -0.6414 45 1 5.8616 -1.2150 -2.2770 46 1 3.3746 -1.7858 -0.9243 47 1 3.5660 -0.3834 -2.0636 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117432393.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:14 Heat of formation + Delta-G solvation = -64.901182 kcal Electronic energy + Delta-G solvation = -30911.629768 eV Core-core repulsion = 26674.135567 eV Total energy + Delta-G solvation = -4237.494201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.01267 -40.83328 -40.17628 -39.15755 -38.00429 -36.25710 -35.19095 -34.05636 -33.79103 -32.09647 -30.96806 -29.30122 -28.15974 -26.73850 -26.39921 -25.57222 -22.90176 -22.72816 -21.99829 -21.46209 -20.64380 -20.07269 -19.50722 -18.92871 -17.56028 -17.37523 -17.04839 -16.94783 -16.70560 -16.53204 -16.49946 -16.06436 -15.66759 -15.47042 -15.29325 -15.21470 -14.88797 -14.63081 -14.46205 -14.27734 -13.98123 -13.75107 -13.49358 -13.28479 -13.05053 -12.95705 -12.77745 -12.45280 -12.39020 -12.12362 -12.00673 -11.95198 -11.79895 -11.58670 -11.47062 -11.31441 -11.18233 -10.65167 -10.33982 -10.24479 -9.76883 -9.64450 -9.02043 -8.46108 -6.07970 0.42487 0.58625 1.30663 1.33447 1.43162 1.66514 1.78749 2.19941 2.23200 2.45306 2.76738 2.91591 3.10251 3.36321 3.55594 3.72188 3.75498 3.93050 4.00034 4.06708 4.19254 4.31828 4.35644 4.39857 4.42126 4.45112 4.53932 4.61336 4.74282 4.82120 4.84832 4.87664 5.07543 5.09889 5.12218 5.16972 5.31674 5.34783 5.46522 5.49637 5.54944 5.67543 5.78459 5.87878 5.93266 6.02830 6.48722 6.52873 6.77671 7.09639 7.28578 7.65146 7.77980 8.70451 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.002603 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.025230 B =10753.682527 C =11187.725630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.321 6.321 3 C 0.126 3.874 4 C -0.227 4.227 5 C -0.085 4.085 6 C -0.174 4.174 7 C -0.049 4.049 8 C -0.121 4.121 9 C 0.213 3.787 10 N -0.709 5.709 11 C 0.706 3.294 12 O -0.609 6.609 13 N -0.731 5.731 14 C 0.143 3.857 15 C 0.446 3.554 16 O -0.614 6.614 17 N -0.578 5.578 18 C -0.331 4.331 19 H 0.063 0.937 20 C -0.007 4.007 21 N -0.926 5.926 22 Si 0.958 3.042 23 H -0.257 1.257 24 H -0.272 1.272 25 H -0.233 1.233 26 C -0.144 4.144 27 C -0.131 4.131 28 C -0.113 4.113 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.136 0.864 35 H 0.123 0.877 36 H 0.406 0.594 37 H 0.406 0.594 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.391 0.609 41 H 0.281 0.719 42 H 0.098 0.902 43 H 0.054 0.946 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.402 9.565 -28.546 30.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.234 6.234 3 C 0.080 3.920 4 C -0.245 4.245 5 C -0.103 4.103 6 C -0.192 4.192 7 C -0.067 4.067 8 C -0.123 4.123 9 C 0.126 3.874 10 N -0.364 5.364 11 C 0.406 3.594 12 O -0.489 6.489 13 N -0.389 5.389 14 C 0.015 3.985 15 C 0.234 3.766 16 O -0.500 6.500 17 N -0.218 5.218 18 C -0.460 4.460 19 H 0.081 0.919 20 C -0.207 4.207 21 N -0.566 5.566 22 Si 0.778 3.222 23 H -0.181 1.181 24 H -0.197 1.197 25 H -0.157 1.157 26 C -0.183 4.183 27 C -0.169 4.169 28 C -0.151 4.151 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.133 0.867 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.154 0.846 35 H 0.141 0.859 36 H 0.242 0.758 37 H 0.243 0.757 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.227 0.773 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.259 9.604 -28.459 30.492 hybrid contribution -0.232 -0.060 1.229 1.252 sum -5.491 9.544 -27.230 29.372 Atomic orbital electron populations 1.23248 0.77364 1.05130 1.01674 1.86068 1.22428 1.26430 1.88486 1.19003 0.91802 0.84931 0.96272 1.21435 1.00747 0.92384 1.09941 1.21219 0.94771 0.97669 0.96667 1.21281 0.94391 0.98795 1.04749 1.20884 1.00001 0.91230 0.94608 1.19190 0.90445 0.95543 1.07121 1.19807 0.95191 0.90152 0.82285 1.44673 1.75182 1.12613 1.03896 1.15913 0.78147 0.84941 0.80423 1.90880 1.57228 1.14371 1.86371 1.44740 1.75909 1.13943 1.04281 1.20601 1.03553 0.92895 0.81491 1.20520 0.82390 0.89055 0.84669 1.90520 1.54345 1.19692 1.85416 1.41921 1.63043 1.11238 1.05611 1.19035 1.47605 0.93879 0.85511 0.91853 1.26049 0.96197 1.04507 0.93958 1.69780 1.48591 1.38257 0.99966 0.85455 0.79766 0.76926 0.80051 1.18104 1.19702 1.15686 1.23399 0.95776 0.99272 0.99837 1.22835 0.95650 0.96508 1.01883 1.23100 0.97216 0.98818 0.95932 0.93183 0.91378 0.86700 0.84060 0.83841 0.84632 0.85864 0.75789 0.75658 0.88272 0.88664 0.77276 0.90904 0.88391 0.92674 0.89970 0.89388 0.90049 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.32 -6.69 9.16 -92.46 -0.85 -7.53 16 3 C 0.13 2.94 6.54 22.51 0.15 3.09 16 4 C -0.23 -4.68 9.04 22.36 0.20 -4.48 16 5 C -0.09 -1.68 10.04 22.25 0.22 -1.46 16 6 C -0.17 -3.75 10.04 22.28 0.22 -3.53 16 7 C -0.05 -1.19 7.61 22.26 0.17 -1.02 16 8 C -0.12 -2.97 3.88 -19.77 -0.08 -3.05 16 9 C 0.21 4.59 0.55 3.38 0.00 4.59 16 10 N -0.71 -17.25 5.22 -439.02 -2.29 -19.54 16 11 C 0.71 22.02 8.32 179.05 1.49 23.51 16 12 O -0.61 -21.79 14.05 -3.98 -0.06 -21.85 16 13 N -0.73 -23.74 5.53 -482.31 -2.67 -26.41 16 14 C 0.14 4.94 6.15 85.63 0.53 5.47 16 15 C 0.45 19.95 7.85 87.66 0.69 20.63 16 16 O -0.61 -32.20 15.24 -3.08 -0.05 -32.24 16 17 N -0.58 -27.10 5.09 -306.97 -1.56 -28.67 16 18 C -0.33 -19.03 10.16 84.04 0.85 -18.18 16 19 H 0.06 4.29 7.39 -2.91 -0.02 4.26 16 20 C -0.01 -0.39 5.50 84.92 0.47 0.08 16 21 N -0.93 -54.79 13.96 21.66 0.30 -54.49 16 22 Si 0.96 38.59 27.74 68.60 1.90 40.49 16 23 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 25 H -0.23 -8.09 6.52 99.48 0.65 -7.44 16 26 C -0.14 -2.78 6.43 31.12 0.20 -2.58 16 27 C -0.13 -1.91 7.99 31.12 0.25 -1.66 16 28 C -0.11 -1.79 6.32 31.12 0.20 -1.60 16 29 H 0.05 0.72 7.66 -2.39 -0.02 0.70 16 30 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 31 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.14 2.25 6.30 -2.91 -0.02 2.23 16 33 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.12 2.97 6.82 -2.91 -0.02 2.95 16 36 H 0.41 8.34 8.64 -92.71 -0.80 7.54 16 37 H 0.41 13.27 7.45 -92.71 -0.69 12.58 16 38 H 0.10 3.14 8.14 -2.39 -0.02 3.13 16 39 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 40 H 0.39 15.51 5.76 -92.71 -0.53 14.97 16 41 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 42 H 0.10 1.68 7.24 -2.39 -0.02 1.66 16 43 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.08 1.22 8.11 -2.39 -0.02 1.20 16 47 H 0.10 1.46 8.09 -2.39 -0.02 1.44 16 Total: -1.00 -76.39 387.38 0.36 -76.03 By element: Atomic # 1 Polarization: 54.03 SS G_CDS: -1.05 Total: 52.98 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 6.67 Total: 21.22 kcal Atomic # 7 Polarization: -122.88 SS G_CDS: -6.22 Total: -129.10 kcal Atomic # 8 Polarization: -60.67 SS G_CDS: -0.95 Total: -61.62 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 1.90 Total: 40.49 kcal Total: -76.39 0.36 -76.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117432393.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.130 kcal (2) G-P(sol) polarization free energy of solvation -76.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds