Wall clock time and date at job start Wed Apr 1 2020 05:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35907 * 116.99703 * 2 1 4 4 C 1.38846 * 119.98664 * 0.02562 * 3 2 1 5 5 C 1.38252 * 120.23716 * 179.97438 * 4 3 2 6 6 C 1.38004 * 120.20831 * 359.97438 * 5 4 3 7 7 C 1.39570 * 119.96427 * 0.02562 * 6 5 4 8 8 C 1.47854 * 120.11617 * 180.02562 * 7 6 5 9 9 O 1.21551 * 119.99965 * 24.48555 * 8 7 6 10 10 N 1.34774 * 120.00068 * 204.48411 * 8 7 6 11 11 C 1.47432 * 125.64552 * 5.47917 * 10 8 7 12 12 C 1.55131 * 104.72185 * 155.81721 * 11 10 8 13 13 C 1.55166 * 101.48465 * 37.29392 * 12 11 10 14 14 H 1.08997 * 110.71886 * 82.69592 * 13 12 11 15 15 N 1.46899 * 110.71561 * 205.96728 * 13 12 11 16 16 C 1.46900 * 110.99843 * 199.97565 * 15 13 12 17 17 C 1.50704 * 109.47395 * 180.02562 * 16 15 13 18 18 O 1.21286 * 119.99638 * 0.02562 * 17 16 15 19 19 N 1.34775 * 119.99884 * 179.97438 * 17 16 15 20 20 C 1.37093 * 119.99578 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00421 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00101 * 180.02562 * 20 19 17 23 23 N 1.31406 * 120.00246 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 119.99646 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.46843 * 90.00139 * 24 22 20 26 26 H 1.48501 * 109.46898 * 210.00028 * 24 22 20 27 27 H 1.48494 * 109.47201 * 330.00071 * 24 22 20 28 28 C 1.47021 * 125.65233 * 185.78650 * 10 8 7 29 29 C 1.38455 * 119.98236 * 179.72808 * 3 2 1 30 30 H 1.09007 * 109.46878 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46939 * 299.99299 * 1 2 3 32 32 H 1.08992 * 109.47326 * 59.99671 * 1 2 3 33 33 H 1.07996 * 119.88244 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.89484 * 179.97438 * 5 4 3 35 35 H 1.07995 * 120.01534 * 179.97438 * 6 5 4 36 36 H 1.09003 * 110.36425 * 274.74308 * 11 10 8 37 37 H 1.08998 * 110.36640 * 37.06744 * 11 10 8 38 38 H 1.08998 * 111.19378 * 279.19020 * 12 11 10 39 39 H 1.08997 * 110.90653 * 155.26691 * 12 11 10 40 40 H 1.00904 * 110.99760 * 76.02595 * 15 13 12 41 41 H 1.09010 * 109.47176 * 300.00578 * 16 15 13 42 42 H 1.08993 * 109.47373 * 60.00039 * 16 15 13 43 43 H 0.96998 * 120.00313 * 0.02562 * 19 17 16 44 44 H 0.96999 * 120.00107 * 179.97438 * 23 22 20 45 45 H 1.09000 * 109.88052 * 300.44217 * 28 10 8 46 46 H 1.08996 * 109.88272 * 61.60293 * 28 10 8 47 47 H 1.08006 * 120.10377 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2894 2.3752 0.0005 5 6 1.9116 3.6098 0.0011 6 6 3.2892 3.6931 0.0016 7 6 4.0580 2.5283 0.0011 8 6 5.5341 2.6137 0.0022 9 8 6.0852 3.6047 0.4398 10 7 6.2685 1.5926 -0.4819 11 6 5.7345 0.3879 -1.1431 12 6 6.9000 -0.1250 -2.0291 13 6 8.1273 0.1717 -1.1273 14 1 8.2682 -0.6225 -0.3942 15 7 9.3378 0.3518 -1.9399 16 6 10.5485 0.1611 -1.1301 17 6 11.7672 0.3538 -1.9955 18 8 11.6396 0.6239 -3.1710 19 7 12.9988 0.2269 -1.4629 20 6 14.1073 0.4017 -2.2503 21 1 13.9938 0.6415 -3.2972 22 6 15.3771 0.2705 -1.7015 23 7 16.4397 0.4385 -2.4561 24 14 15.5735 -0.1449 0.1092 25 1 15.6195 -1.6197 0.2765 26 1 16.8343 0.4508 0.6197 27 1 14.4228 0.4040 0.8706 28 6 7.7345 1.4926 -0.4326 29 6 3.4286 1.2831 0.0057 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 0.2111 2.3162 0.0014 34 1 1.3178 4.5119 0.0011 35 1 3.7719 4.6592 0.0016 36 1 5.4605 -0.3621 -0.4010 37 1 4.8735 0.6441 -1.7605 38 1 6.9586 0.4318 -2.9643 39 1 6.8035 -1.1941 -2.2181 40 1 9.3412 1.2558 -2.3881 41 1 10.5611 0.8884 -0.3183 42 1 10.5530 -0.8467 -0.7150 43 1 13.1008 0.0112 -0.5228 44 1 17.3261 0.3472 -2.0728 45 1 8.1815 2.3357 -0.9594 46 1 8.0705 1.4803 0.6042 47 1 4.0183 0.3782 0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187357364.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:59 Heat of formation + Delta-G solvation = -53.449630 kcal Electronic energy + Delta-G solvation = -29333.993676 eV Core-core repulsion = 25096.996051 eV Total energy + Delta-G solvation = -4236.997624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.04256 -40.02935 -38.68194 -37.97161 -37.28321 -34.93375 -33.87609 -32.08857 -31.65688 -30.88342 -30.58424 -28.82558 -27.78946 -26.43886 -24.82439 -23.64850 -22.83692 -22.65075 -21.02606 -20.20373 -19.40872 -18.49032 -18.18806 -17.29994 -16.81855 -16.53513 -16.46228 -16.23904 -15.91761 -15.53857 -15.39849 -14.81926 -14.69594 -14.25024 -14.09466 -14.07338 -13.80958 -13.44050 -13.22645 -13.11491 -12.91488 -12.75181 -12.57966 -12.44671 -12.22009 -12.20809 -12.03793 -11.71295 -11.61352 -11.55710 -11.24356 -11.15459 -11.01412 -10.59174 -10.25224 -9.97347 -9.57465 -9.50266 -8.99161 -8.71823 -8.62441 -8.24903 -8.17418 -6.30896 -3.82430 0.40689 0.93445 2.46373 2.56617 2.76698 3.03312 3.07392 3.15785 3.37976 3.72865 3.91854 4.09389 4.11734 4.21436 4.33978 4.41968 4.55574 4.61035 4.62117 4.77414 4.82276 4.84986 4.91742 4.94134 4.97631 4.98896 5.09757 5.22443 5.24301 5.38109 5.50577 5.55712 5.61898 5.70602 5.74147 5.80567 5.85395 5.87456 5.89670 5.97305 6.04022 6.14664 6.83372 6.99715 7.16882 7.45162 7.57800 7.84119 8.14300 8.59384 8.94912 9.42289 9.81897 10.82140 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024362 B = 0.001763 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.041217 B =15879.376255 C =16252.854255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.119 3.881 4 C -0.186 4.186 5 C -0.087 4.087 6 C -0.099 4.099 7 C -0.088 4.088 8 C 0.572 3.428 9 O -0.531 6.531 10 N -0.609 5.609 11 C 0.092 3.908 12 C -0.122 4.122 13 C 0.078 3.922 14 H 0.097 0.903 15 N -0.652 5.652 16 C 0.044 3.956 17 C 0.449 3.551 18 O -0.565 6.565 19 N -0.589 5.589 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.076 3.924 29 C -0.130 4.130 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.355 0.645 41 H 0.047 0.953 42 H 0.090 0.910 43 H 0.371 0.629 44 H 0.273 0.727 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.689 -0.953 8.829 35.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.229 6.229 3 C 0.074 3.926 4 C -0.205 4.205 5 C -0.105 4.105 6 C -0.118 4.118 7 C -0.091 4.091 8 C 0.361 3.639 9 O -0.408 6.408 10 N -0.343 5.343 11 C -0.031 4.031 12 C -0.160 4.160 13 C -0.034 4.034 14 H 0.115 0.885 15 N -0.284 5.284 16 C -0.088 4.088 17 C 0.235 3.765 18 O -0.447 6.447 19 N -0.229 5.229 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.049 4.049 29 C -0.149 4.149 30 H 0.120 0.880 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.176 0.824 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.088 0.912 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -34.151 -1.010 8.012 35.093 hybrid contribution 0.084 0.617 2.057 2.150 sum -34.067 -0.393 10.069 35.526 Atomic orbital electron populations 1.23096 0.78081 1.04263 1.01415 1.86093 1.21591 1.26461 1.88738 1.18854 0.92014 0.84481 0.97235 1.21460 1.00365 0.92392 1.06317 1.20936 0.94217 0.97320 0.98011 1.21186 0.93398 0.98157 0.99057 1.19643 0.92636 0.93571 1.03295 1.17919 0.86257 0.81782 0.77903 1.90813 1.72797 1.30217 1.47012 1.48276 1.07478 1.20094 1.58407 1.22810 0.98087 0.86540 0.95620 1.22887 0.91949 1.02702 0.98466 1.22728 0.90981 0.95234 0.94481 0.88505 1.60210 0.99153 1.39499 1.29521 1.21793 0.90185 1.01984 0.94871 1.19664 0.83673 0.84390 0.88797 1.90570 1.85732 1.51845 1.16511 1.42197 1.05857 1.64078 1.10744 1.19433 0.82269 1.45471 0.96264 0.86260 1.25042 0.95130 0.97648 0.98312 1.69619 0.98078 1.48542 1.35806 0.86670 0.78572 0.79319 0.84817 1.19582 1.20180 1.19505 1.22973 0.79976 0.99864 1.02048 1.21048 0.91965 0.98408 1.03488 0.87968 0.92561 0.92492 0.85027 0.84902 0.84573 0.90620 0.89744 0.89611 0.88981 0.82382 0.93455 0.89189 0.79667 0.91600 0.90808 0.91151 0.83474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.09 9.81 101.05 0.99 1.08 16 2 O -0.32 -2.31 10.49 -19.45 -0.20 -2.51 16 3 C 0.12 0.95 6.68 -39.28 -0.26 0.69 16 4 C -0.19 -1.23 9.03 -39.35 -0.36 -1.59 16 5 C -0.09 -0.60 10.03 -39.66 -0.40 -1.00 16 6 C -0.10 -0.92 9.59 -39.17 -0.38 -1.29 16 7 C -0.09 -0.91 5.67 -104.99 -0.59 -1.51 16 8 C 0.57 7.32 7.64 -12.33 -0.09 7.23 16 9 O -0.53 -8.72 16.93 5.32 0.09 -8.63 16 10 N -0.61 -6.67 3.32 -171.49 -0.57 -7.24 16 11 C 0.09 0.73 5.00 -2.41 -0.01 0.72 16 12 C -0.12 -1.07 6.78 -24.46 -0.17 -1.23 16 13 C 0.08 0.82 3.23 -65.88 -0.21 0.61 16 14 H 0.10 0.91 7.90 -51.93 -0.41 0.50 16 15 N -0.65 -9.44 5.98 -106.05 -0.63 -10.07 16 16 C 0.04 0.70 6.02 -4.97 -0.03 0.67 16 17 C 0.45 10.06 7.82 -10.98 -0.09 9.98 16 18 O -0.56 -15.05 15.78 5.55 0.09 -14.96 16 19 N -0.59 -13.97 5.09 -10.96 -0.06 -14.03 16 20 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 21 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 22 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 23 N -0.88 -25.79 13.96 55.50 0.77 -25.01 16 24 Si 0.88 19.40 27.74 -169.99 -4.71 14.68 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 28 C 0.08 0.87 6.52 -3.07 -0.02 0.85 16 29 C -0.13 -1.14 8.01 -39.02 -0.31 -1.45 16 30 H 0.10 0.19 8.14 -51.92 -0.42 -0.23 16 31 H 0.06 0.15 7.66 -51.93 -0.40 -0.25 16 32 H 0.06 0.15 7.66 -51.93 -0.40 -0.25 16 33 H 0.13 0.54 6.28 -52.49 -0.33 0.21 16 34 H 0.13 0.59 8.06 -52.48 -0.42 0.16 16 35 H 0.14 1.27 7.84 -52.49 -0.41 0.86 16 36 H 0.08 0.48 6.84 -51.93 -0.36 0.12 16 37 H 0.08 0.61 6.82 -51.93 -0.35 0.26 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.36 5.52 7.86 -39.29 -0.31 5.22 16 41 H 0.05 0.67 8.13 -51.92 -0.42 0.24 16 42 H 0.09 1.24 8.09 -51.93 -0.42 0.82 16 43 H 0.37 7.70 5.76 -40.82 -0.24 7.46 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.07 0.97 7.57 -51.93 -0.39 0.57 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.15 1.12 4.61 -52.48 -0.24 0.88 16 LS Contribution 386.85 15.07 5.83 5.83 Total: -1.00 -36.05 386.85 -7.92 -43.97 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -6.35 Total: 11.97 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -2.18 Total: 5.99 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.49 Total: -56.35 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.03 Total: -26.10 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.68 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.05 -7.92 -43.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187357364.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.476 kcal (2) G-P(sol) polarization free energy of solvation -36.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds