Wall clock time and date at job start Wed Apr 1 2020 05:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35907 * 116.99703 * 2 1 4 4 C 1.38846 * 119.98664 * 0.02562 * 3 2 1 5 5 C 1.38252 * 120.23716 * 179.97438 * 4 3 2 6 6 C 1.38004 * 120.20831 * 359.97438 * 5 4 3 7 7 C 1.39570 * 119.96427 * 0.02562 * 6 5 4 8 8 C 1.47854 * 120.11617 * 180.02562 * 7 6 5 9 9 O 1.21551 * 119.99965 * 24.48555 * 8 7 6 10 10 N 1.34774 * 120.00068 * 204.48411 * 8 7 6 11 11 C 1.47432 * 125.64552 * 5.47917 * 10 8 7 12 12 C 1.55131 * 104.72185 * 155.81721 * 11 10 8 13 13 C 1.55166 * 101.48465 * 37.29392 * 12 11 10 14 14 H 1.08997 * 110.71886 * 82.69592 * 13 12 11 15 15 N 1.46899 * 110.71561 * 205.96728 * 13 12 11 16 16 C 1.46900 * 110.99843 * 199.97565 * 15 13 12 17 17 C 1.50704 * 109.47395 * 180.02562 * 16 15 13 18 18 O 1.21286 * 119.99638 * 0.02562 * 17 16 15 19 19 N 1.34775 * 119.99884 * 179.97438 * 17 16 15 20 20 C 1.37093 * 119.99578 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00421 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00101 * 180.02562 * 20 19 17 23 23 N 1.31406 * 120.00246 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 119.99646 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.46843 * 90.00139 * 24 22 20 26 26 H 1.48501 * 109.46898 * 210.00028 * 24 22 20 27 27 H 1.48494 * 109.47201 * 330.00071 * 24 22 20 28 28 C 1.47021 * 125.65233 * 185.78650 * 10 8 7 29 29 C 1.38455 * 119.98236 * 179.72808 * 3 2 1 30 30 H 1.09007 * 109.46878 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46939 * 299.99299 * 1 2 3 32 32 H 1.08992 * 109.47326 * 59.99671 * 1 2 3 33 33 H 1.07996 * 119.88244 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.89484 * 179.97438 * 5 4 3 35 35 H 1.07995 * 120.01534 * 179.97438 * 6 5 4 36 36 H 1.09003 * 110.36425 * 274.74308 * 11 10 8 37 37 H 1.08998 * 110.36640 * 37.06744 * 11 10 8 38 38 H 1.08998 * 111.19378 * 279.19020 * 12 11 10 39 39 H 1.08997 * 110.90653 * 155.26691 * 12 11 10 40 40 H 1.00904 * 110.99760 * 76.02595 * 15 13 12 41 41 H 1.09010 * 109.47176 * 300.00578 * 16 15 13 42 42 H 1.08993 * 109.47373 * 60.00039 * 16 15 13 43 43 H 0.96998 * 120.00313 * 0.02562 * 19 17 16 44 44 H 0.96999 * 120.00107 * 179.97438 * 23 22 20 45 45 H 1.09000 * 109.88052 * 300.44217 * 28 10 8 46 46 H 1.08996 * 109.88272 * 61.60293 * 28 10 8 47 47 H 1.08006 * 120.10377 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2894 2.3752 0.0005 5 6 1.9116 3.6098 0.0011 6 6 3.2892 3.6931 0.0016 7 6 4.0580 2.5283 0.0011 8 6 5.5341 2.6137 0.0022 9 8 6.0852 3.6047 0.4398 10 7 6.2685 1.5926 -0.4819 11 6 5.7345 0.3879 -1.1431 12 6 6.9000 -0.1250 -2.0291 13 6 8.1273 0.1717 -1.1273 14 1 8.2682 -0.6225 -0.3942 15 7 9.3378 0.3518 -1.9399 16 6 10.5485 0.1611 -1.1301 17 6 11.7672 0.3538 -1.9955 18 8 11.6396 0.6239 -3.1710 19 7 12.9988 0.2269 -1.4629 20 6 14.1073 0.4017 -2.2503 21 1 13.9938 0.6415 -3.2972 22 6 15.3771 0.2705 -1.7015 23 7 16.4397 0.4385 -2.4561 24 14 15.5735 -0.1449 0.1092 25 1 15.6195 -1.6197 0.2765 26 1 16.8343 0.4508 0.6197 27 1 14.4228 0.4040 0.8706 28 6 7.7345 1.4926 -0.4326 29 6 3.4286 1.2831 0.0057 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 0.2111 2.3162 0.0014 34 1 1.3178 4.5119 0.0011 35 1 3.7719 4.6592 0.0016 36 1 5.4605 -0.3621 -0.4010 37 1 4.8735 0.6441 -1.7605 38 1 6.9586 0.4318 -2.9643 39 1 6.8035 -1.1941 -2.2181 40 1 9.3412 1.2558 -2.3881 41 1 10.5611 0.8884 -0.3183 42 1 10.5530 -0.8467 -0.7150 43 1 13.1008 0.0112 -0.5228 44 1 17.3261 0.3472 -2.0728 45 1 8.1815 2.3357 -0.9594 46 1 8.0705 1.4803 0.6042 47 1 4.0183 0.3782 0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187357364.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:57 Heat of formation + Delta-G solvation = -82.037304 kcal Electronic energy + Delta-G solvation = -29335.233330 eV Core-core repulsion = 25096.996051 eV Total energy + Delta-G solvation = -4238.237279 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.77808 -40.72709 -40.26861 -39.01203 -37.98987 -36.27690 -35.66148 -33.75689 -32.81092 -31.67689 -31.19394 -29.78389 -28.27744 -27.76686 -25.99322 -24.96474 -23.48195 -23.34290 -21.87137 -21.29154 -20.94727 -20.30005 -18.97758 -18.06255 -17.76900 -17.61858 -17.11807 -17.04563 -16.83655 -16.63038 -16.44664 -16.32451 -15.85362 -15.44824 -15.14457 -14.91336 -14.71961 -14.56306 -14.45732 -14.16992 -14.03928 -13.85271 -13.60099 -13.43792 -13.30272 -13.13293 -12.94547 -12.80822 -12.52172 -12.43460 -12.39631 -12.03847 -11.98590 -11.86624 -11.77361 -11.51546 -11.19360 -10.45320 -10.25160 -10.13647 -9.85099 -9.41119 -9.28761 -8.41525 -6.02553 -0.25103 0.34874 1.30546 1.35754 1.44593 1.63168 1.76003 1.95365 2.22961 2.30479 2.67836 2.74787 3.14673 3.21396 3.42842 3.58298 3.69059 3.77298 4.03773 4.05546 4.12015 4.15470 4.21126 4.22701 4.32372 4.42296 4.42871 4.45153 4.46340 4.52524 4.58329 4.70993 4.73761 4.78437 4.85273 5.01758 5.13302 5.17716 5.21215 5.28072 5.37530 5.52443 5.57729 5.89183 6.01493 6.23474 6.31842 6.37239 6.59040 6.87677 6.91880 7.39255 7.95795 8.76088 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.024362 B = 0.001763 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.041217 B =15879.376255 C =16252.854255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.329 6.329 3 C 0.115 3.885 4 C -0.179 4.179 5 C -0.082 4.082 6 C -0.117 4.117 7 C -0.107 4.107 8 C 0.566 3.434 9 O -0.582 6.582 10 N -0.607 5.607 11 C 0.095 3.905 12 C -0.116 4.116 13 C 0.085 3.915 14 H 0.123 0.877 15 N -0.666 5.666 16 C 0.058 3.942 17 C 0.447 3.553 18 O -0.615 6.615 19 N -0.590 5.590 20 C -0.330 4.330 21 H 0.055 0.945 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.965 3.035 25 H -0.255 1.255 26 H -0.276 1.276 27 H -0.232 1.232 28 C 0.076 3.924 29 C -0.133 4.133 30 H 0.118 0.882 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.162 0.838 34 H 0.160 0.840 35 H 0.124 0.876 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.344 0.656 41 H 0.074 0.926 42 H 0.125 0.875 43 H 0.390 0.610 44 H 0.279 0.721 45 H 0.049 0.951 46 H 0.071 0.929 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.062 -3.000 11.863 39.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.069 3.931 4 C -0.197 4.197 5 C -0.100 4.100 6 C -0.136 4.136 7 C -0.110 4.110 8 C 0.357 3.643 9 O -0.463 6.463 10 N -0.340 5.340 11 C -0.027 4.027 12 C -0.155 4.155 13 C -0.026 4.026 14 H 0.141 0.859 15 N -0.297 5.297 16 C -0.074 4.074 17 C 0.235 3.765 18 O -0.500 6.500 19 N -0.232 5.232 20 C -0.459 4.459 21 H 0.073 0.927 22 C -0.214 4.214 23 N -0.575 5.575 24 Si 0.785 3.215 25 H -0.179 1.179 26 H -0.201 1.201 27 H -0.156 1.156 28 C -0.049 4.049 29 C -0.152 4.152 30 H 0.136 0.864 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.179 0.821 34 H 0.178 0.822 35 H 0.142 0.858 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.132 0.868 40 H 0.164 0.836 41 H 0.092 0.908 42 H 0.143 0.857 43 H 0.226 0.774 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -37.575 -3.102 11.043 39.287 hybrid contribution 0.991 1.259 0.954 1.865 sum -36.584 -1.843 11.997 38.545 Atomic orbital electron populations 1.23401 0.76137 1.05807 1.02502 1.86078 1.23626 1.26074 1.88547 1.18963 0.91907 0.85332 0.96875 1.21813 1.01861 0.91606 1.04455 1.21220 0.93247 0.98772 0.96759 1.21277 0.94666 0.97513 1.00172 1.19514 0.91136 0.94799 1.05540 1.18404 0.87436 0.81320 0.77185 1.90769 1.73899 1.32168 1.49514 1.48369 1.07292 1.20580 1.57726 1.23007 0.97854 0.85739 0.96054 1.22890 0.91218 1.03808 0.97561 1.22827 0.89804 0.95142 0.94849 0.85919 1.60259 1.00059 1.38979 1.30389 1.21744 0.87164 1.04672 0.93800 1.20996 0.85045 0.81537 0.88898 1.90549 1.86727 1.53298 1.19376 1.42024 1.05116 1.64819 1.11232 1.19012 0.84828 1.47548 0.94544 0.92707 1.26126 0.93783 0.96500 1.04962 1.69803 0.98994 1.49645 1.39012 0.85361 0.79692 0.79865 0.76574 1.17882 1.20148 1.15558 1.22913 0.80497 0.99618 1.01858 1.21075 0.92743 0.97881 1.03506 0.86396 0.91460 0.91326 0.82077 0.82245 0.85758 0.87952 0.88908 0.91164 0.86834 0.83631 0.90819 0.85738 0.77427 0.91146 0.93234 0.91028 0.82604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.17 16 2 O -0.33 -3.87 10.49 -92.51 -0.97 -4.85 16 3 C 0.11 1.55 6.68 22.47 0.15 1.70 16 4 C -0.18 -1.84 9.03 22.42 0.20 -1.64 16 5 C -0.08 -0.98 10.03 22.22 0.22 -0.76 16 6 C -0.12 -2.16 9.59 22.54 0.22 -1.95 16 7 C -0.11 -2.19 5.67 -20.10 -0.11 -2.31 16 8 C 0.57 14.81 7.64 86.79 0.66 15.48 16 9 O -0.58 -20.18 16.93 -3.88 -0.07 -20.24 16 10 N -0.61 -12.95 3.32 -814.74 -2.71 -15.66 16 11 C 0.09 1.29 5.00 86.93 0.43 1.73 16 12 C -0.12 -1.79 6.78 32.07 0.22 -1.57 16 13 C 0.08 1.60 3.23 46.11 0.15 1.75 16 14 H 0.12 1.76 7.90 -2.39 -0.02 1.74 16 15 N -0.67 -18.45 5.98 -489.43 -2.93 -21.38 16 16 C 0.06 1.70 6.02 85.56 0.52 2.22 16 17 C 0.45 20.09 7.82 87.66 0.69 20.78 16 18 O -0.61 -34.19 15.78 -3.05 -0.05 -34.24 16 19 N -0.59 -27.87 5.09 -306.99 -1.56 -29.43 16 20 C -0.33 -19.51 10.16 84.04 0.85 -18.65 16 21 H 0.05 3.86 7.39 -2.91 -0.02 3.84 16 22 C -0.02 -0.84 5.50 84.93 0.47 -0.38 16 23 N -0.93 -56.76 13.96 21.66 0.30 -56.46 16 24 Si 0.97 39.02 27.74 68.60 1.90 40.92 16 25 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 26 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.23 -7.92 6.52 99.48 0.65 -7.27 16 28 C 0.08 1.70 6.52 86.73 0.57 2.26 16 29 C -0.13 -2.12 8.01 22.63 0.18 -1.94 16 30 H 0.12 0.06 8.14 -2.38 -0.02 0.04 16 31 H 0.07 0.11 7.66 -2.39 -0.02 0.09 16 32 H 0.07 0.11 7.66 -2.39 -0.02 0.09 16 33 H 0.16 0.64 6.28 -2.91 -0.02 0.62 16 34 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 35 H 0.12 2.49 7.84 -2.91 -0.02 2.47 16 36 H 0.10 0.92 6.84 -2.39 -0.02 0.90 16 37 H 0.09 1.16 6.82 -2.39 -0.02 1.14 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.34 10.88 7.86 -89.69 -0.70 10.17 16 41 H 0.07 1.83 8.13 -2.38 -0.02 1.81 16 42 H 0.12 2.87 8.09 -2.39 -0.02 2.85 16 43 H 0.39 15.17 5.76 -92.71 -0.53 14.64 16 44 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 45 H 0.05 1.35 7.57 -2.39 -0.02 1.33 16 46 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.16 2.02 4.61 -2.91 -0.01 2.01 16 Total: -1.00 -86.72 386.85 0.18 -86.54 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: -0.27 Total: 36.89 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 6.52 Total: 17.90 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -6.90 Total: -122.93 kcal Atomic # 8 Polarization: -58.24 SS G_CDS: -1.08 Total: -59.33 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 1.90 Total: 40.92 kcal Total: -86.72 0.18 -86.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187357364.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.508 kcal (2) G-P(sol) polarization free energy of solvation -86.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds