Wall clock time and date at job start Wed Apr 1 2020 05:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35897 * 117.00184 * 2 1 4 4 C 1.38757 * 120.05655 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94748 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05482 * 0.02562 * 5 4 3 7 7 C 1.38239 * 120.11122 * 359.73742 * 6 5 4 8 8 C 1.38166 * 120.05491 * 0.51679 * 7 6 5 9 9 C 1.50708 * 120.02756 * 179.76721 * 8 7 6 10 10 H 1.09000 * 109.46833 * 221.30250 * 9 8 7 11 11 C 1.52999 * 109.46914 * 341.29406 * 9 8 7 12 12 N 1.46501 * 109.46987 * 174.99885 * 11 9 8 13 13 C 1.34776 * 119.99890 * 180.02562 * 12 11 9 14 14 O 1.21281 * 120.00175 * 354.98553 * 13 12 11 15 15 C 1.50704 * 119.99983 * 174.99193 * 13 12 11 16 16 C 1.50696 * 115.55149 * 279.07905 * 15 13 12 17 17 N 1.34777 * 119.99579 * 294.18259 * 16 15 13 18 18 O 1.21278 * 120.00408 * 114.17997 * 16 15 13 19 19 C 1.53003 * 117.49858 * 133.36718 * 15 13 12 20 20 C 1.52999 * 59.99991 * 252.51030 * 19 15 13 21 21 N 1.46494 * 109.47360 * 101.29693 * 9 8 7 22 22 C 1.36933 * 120.00000 * 303.81256 * 21 9 8 23 23 H 1.08001 * 120.00421 * 354.57782 * 22 21 9 24 24 C 1.38815 * 120.00207 * 174.29592 * 22 21 9 25 25 N 1.31622 * 119.99718 * 0.27825 * 24 22 21 26 26 Si 1.86792 * 120.00313 * 180.27709 * 24 22 21 27 27 H 1.48492 * 109.47396 * 60.00117 * 26 24 22 28 28 H 1.48505 * 109.47104 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47126 * 300.00138 * 26 24 22 30 30 H 1.09001 * 109.46980 * 59.99921 * 1 2 3 31 31 H 1.09005 * 109.47096 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47505 * 299.99903 * 1 2 3 33 33 H 1.08003 * 120.02506 * 359.94975 * 4 3 2 34 34 H 1.07998 * 119.97317 * 179.97438 * 5 4 3 35 35 H 1.08004 * 119.93976 * 180.02562 * 6 5 4 36 36 H 1.07997 * 119.97321 * 180.25292 * 7 6 5 37 37 H 1.08997 * 109.47686 * 295.00075 * 11 9 8 38 38 H 1.09006 * 109.46869 * 55.00516 * 11 9 8 39 39 H 0.96993 * 119.99862 * 0.02562 * 12 11 9 40 40 H 0.96996 * 119.99997 * 5.00456 * 17 16 15 41 41 H 0.97005 * 119.99994 * 184.99128 * 17 16 15 42 42 H 1.08995 * 117.49862 * 359.97438 * 19 15 13 43 43 H 1.08996 * 117.49689 * 145.02455 * 19 15 13 44 44 H 1.08997 * 117.50467 * 252.51079 * 20 19 15 45 45 H 1.09003 * 117.51766 * 107.47945 * 20 19 15 46 46 H 0.97002 * 120.00161 * 123.80804 * 21 9 8 47 47 H 0.97001 * 120.00162 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6758 0.0005 7 6 4.0559 2.5172 0.0049 8 6 3.4311 1.2849 -0.0009 9 6 4.2537 0.0221 -0.0014 10 1 3.8077 -0.7017 -0.6834 11 6 5.6786 0.3420 -0.4578 12 7 6.5089 -0.8597 -0.3446 13 6 7.8101 -0.8150 -0.6932 14 8 8.2717 0.1927 -1.1856 15 6 8.6913 -2.0172 -0.4713 16 6 9.2170 -2.1879 0.9307 17 7 10.0781 -1.2859 1.4419 18 8 8.8652 -3.1369 1.5989 19 6 9.5991 -2.4501 -1.6243 20 6 8.3689 -3.2854 -1.2641 21 7 4.2885 -0.5386 1.3516 22 6 4.7371 0.2234 2.3972 23 1 5.1468 1.2055 2.2129 24 6 4.6598 -0.2641 3.6946 25 7 4.1605 -1.4610 3.9192 26 14 5.2646 0.7784 5.1217 27 1 4.4948 2.0473 5.1689 28 1 5.0737 0.0354 6.3932 29 1 6.7068 1.0810 4.9374 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.2128 2.3204 0.0001 34 1 1.3340 4.5114 0.0011 35 1 3.7922 4.6381 0.0014 36 1 5.1343 2.5752 0.0086 37 1 5.6616 0.6755 -1.4953 38 1 6.0930 1.1304 0.1706 39 1 6.1223 -1.6874 -0.0187 40 1 10.3032 -0.4894 0.9361 41 1 10.4726 -1.4330 2.3158 42 1 9.5587 -1.8657 -2.5434 43 1 10.5769 -2.8584 -1.3689 44 1 8.5374 -4.2432 -0.7718 45 1 7.5192 -3.2504 -1.9459 46 1 3.9938 -1.4496 1.5068 47 1 4.1068 -1.8019 4.8257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198875893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:52 Heat of formation + Delta-G solvation = -38.487003 kcal Electronic energy + Delta-G solvation = -31478.365704 eV Core-core repulsion = 27242.016908 eV Total energy + Delta-G solvation = -4236.348796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.43041 -39.84396 -38.58771 -37.22173 -36.09122 -35.60689 -33.49949 -33.36403 -31.95231 -29.88937 -29.50594 -27.72100 -26.78381 -25.35166 -24.18751 -22.72967 -22.49739 -21.83107 -21.20632 -19.87707 -19.31420 -17.93656 -17.71639 -17.15265 -16.95918 -15.93508 -15.84325 -15.57892 -15.36101 -15.16868 -15.00169 -14.83938 -14.31025 -14.06713 -13.99462 -13.75173 -13.56840 -13.17138 -13.05539 -12.78791 -12.64673 -12.24245 -11.91948 -11.71655 -11.63599 -11.56539 -11.15478 -10.92609 -10.84721 -10.73601 -10.66726 -10.53762 -10.45000 -10.00864 -9.98622 -9.70709 -9.57089 -9.46036 -8.94324 -8.54816 -8.39389 -7.67256 -6.99848 -5.75782 -3.05698 1.79757 1.93022 2.48889 2.88582 3.27295 3.43837 3.48635 3.48992 3.50067 3.71347 3.85141 4.22996 4.61562 4.66815 4.75480 4.86602 5.03268 5.13661 5.15831 5.32854 5.41599 5.42698 5.47499 5.55010 5.60410 5.65616 5.70385 5.73731 5.74002 5.86545 5.91223 5.98316 6.00833 6.10137 6.36445 6.46874 6.58297 6.73676 6.85517 6.86629 6.95185 7.03648 7.25176 7.39479 7.73046 7.86894 7.92915 8.34560 8.40121 8.52258 9.53307 10.03258 10.39885 11.45677 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009439 B = 0.004148 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.777765 B = 6748.104123 C = 7994.992670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.303 6.303 3 C 0.145 3.855 4 C -0.215 4.215 5 C -0.095 4.095 6 C -0.161 4.161 7 C -0.079 4.079 8 C -0.092 4.092 9 C 0.207 3.793 10 H 0.072 0.928 11 C 0.105 3.895 12 N -0.688 5.688 13 C 0.552 3.448 14 O -0.547 6.547 15 C -0.192 4.192 16 C 0.566 3.434 17 N -0.846 5.846 18 O -0.524 6.524 19 C -0.131 4.131 20 C -0.134 4.134 21 N -0.703 5.703 22 C -0.235 4.235 23 H 0.068 0.932 24 C -0.004 4.004 25 N -0.925 5.925 26 Si 0.899 3.101 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.127 0.873 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.407 0.593 40 H 0.405 0.595 41 H 0.404 0.596 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.113 0.887 45 H 0.108 0.892 46 H 0.388 0.612 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.161 2.141 -12.747 13.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.215 6.215 3 C 0.099 3.901 4 C -0.234 4.234 5 C -0.114 4.114 6 C -0.179 4.179 7 C -0.098 4.098 8 C -0.095 4.095 9 C 0.095 3.905 10 H 0.090 0.910 11 C -0.021 4.021 12 N -0.337 5.337 13 C 0.336 3.664 14 O -0.426 6.426 15 C -0.198 4.198 16 C 0.348 3.652 17 N -0.409 5.409 18 O -0.399 6.399 19 C -0.169 4.169 20 C -0.171 4.171 21 N -0.342 5.342 22 C -0.366 4.366 23 H 0.086 0.914 24 C -0.200 4.200 25 N -0.572 5.572 26 Si 0.730 3.270 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.145 0.855 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.243 0.757 40 H 0.234 0.766 41 H 0.235 0.765 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.131 0.869 45 H 0.127 0.873 46 H 0.222 0.778 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.240 2.067 -12.615 12.978 hybrid contribution -0.110 0.686 1.612 1.756 sum 2.130 2.753 -11.002 11.540 Atomic orbital electron populations 1.22947 0.79553 1.03384 1.00560 1.86144 1.20234 1.26795 1.88353 1.18737 0.91724 0.83890 0.95741 1.21087 0.99360 0.92635 1.10334 1.20735 0.94623 0.96473 0.99530 1.20936 0.93861 0.98105 1.05017 1.20991 0.99984 0.91232 0.97558 1.19810 0.90831 0.96581 1.02315 1.19155 0.90338 0.91480 0.89489 0.90962 1.22072 0.93194 0.87088 0.99707 1.45709 1.08984 1.15056 1.63936 1.18905 0.82263 0.86853 0.78390 1.90668 1.74450 1.32586 1.44848 1.21424 1.05893 0.99142 0.93371 1.18932 0.77982 0.82236 0.86013 1.43702 1.48233 1.25533 1.23455 1.90790 1.57240 1.31816 1.60053 1.23024 0.95507 1.01615 0.96749 1.23086 0.99730 0.94013 1.00293 1.42343 1.76426 1.14446 1.00954 1.18993 1.32952 0.98935 0.85717 0.91387 1.24692 1.01342 0.96852 0.97150 1.69635 1.50564 1.16875 1.20123 0.86406 0.78479 0.79574 0.82562 1.21342 1.21751 1.21380 0.93468 0.88713 0.93033 0.86291 0.86766 0.86685 0.85507 0.92334 0.91137 0.75668 0.76621 0.76538 0.87154 0.87684 0.86896 0.87320 0.77763 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.30 -5.34 9.76 -19.42 -0.19 -5.53 16 3 C 0.14 2.62 6.66 -39.22 -0.26 2.36 16 4 C -0.22 -3.39 9.04 -39.43 -0.36 -3.75 16 5 C -0.10 -1.41 10.04 -39.61 -0.40 -1.81 16 6 C -0.16 -2.50 10.04 -39.56 -0.40 -2.89 16 7 C -0.08 -1.37 8.66 -39.61 -0.34 -1.71 16 8 C -0.09 -1.72 4.66 -104.47 -0.49 -2.20 16 9 C 0.21 3.92 2.73 -69.08 -0.19 3.73 16 10 H 0.07 1.29 7.90 -51.93 -0.41 0.88 16 11 C 0.11 1.88 4.14 -4.04 -0.02 1.86 16 12 N -0.69 -11.94 5.39 -60.29 -0.32 -12.26 16 13 C 0.55 9.27 6.97 -10.98 -0.08 9.19 16 14 O -0.55 -10.18 17.02 5.56 0.09 -10.08 16 15 C -0.19 -2.74 2.25 -156.81 -0.35 -3.10 16 16 C 0.57 9.19 7.34 -10.99 -0.08 9.11 16 17 N -0.85 -11.03 8.87 31.22 0.28 -10.76 16 18 O -0.52 -10.52 17.54 5.56 0.10 -10.43 16 19 C -0.13 -1.41 9.87 -26.73 -0.26 -1.67 16 20 C -0.13 -1.56 9.76 -26.73 -0.26 -1.82 16 21 N -0.70 -16.31 4.72 -54.55 -0.26 -16.57 16 22 C -0.23 -6.19 8.82 -15.06 -0.13 -6.32 16 23 H 0.07 1.79 6.88 -52.49 -0.36 1.43 16 24 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 25 N -0.92 -27.48 13.07 55.49 0.73 -26.76 16 26 Si 0.90 22.77 29.55 -169.99 -5.02 17.75 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 29 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 30 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 33 H 0.12 1.57 6.30 -52.48 -0.33 1.24 16 34 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 36 H 0.13 2.13 5.84 -52.49 -0.31 1.82 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.39 5.80 -51.93 -0.30 1.09 16 39 H 0.41 7.22 8.14 -40.82 -0.33 6.88 16 40 H 0.41 4.62 8.83 -40.82 -0.36 4.26 16 41 H 0.40 4.69 8.93 -40.82 -0.36 4.33 16 42 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.11 1.32 8.00 -51.93 -0.42 0.90 16 45 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.39 9.78 8.04 -40.82 -0.33 9.46 16 47 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 398.65 15.07 6.01 6.01 Total: -1.00 -34.54 398.65 -7.71 -42.26 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: -6.40 Total: 24.21 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -2.72 Total: 2.16 kcal Atomic # 7 Polarization: -66.76 SS G_CDS: 0.42 Total: -66.34 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: 0.00 Total: -26.04 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.54 -7.71 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198875893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.769 kcal (2) G-P(sol) polarization free energy of solvation -34.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds