Wall clock time and date at job start Wed Apr 1 2020 05:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35897 * 117.00184 * 2 1 4 4 C 1.38757 * 120.05655 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94748 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05482 * 0.02562 * 5 4 3 7 7 C 1.38239 * 120.11122 * 359.73742 * 6 5 4 8 8 C 1.38166 * 120.05491 * 0.51679 * 7 6 5 9 9 C 1.50708 * 120.02756 * 179.76721 * 8 7 6 10 10 H 1.09000 * 109.46833 * 221.30250 * 9 8 7 11 11 C 1.52999 * 109.46914 * 341.29406 * 9 8 7 12 12 N 1.46501 * 109.46987 * 174.99885 * 11 9 8 13 13 C 1.34776 * 119.99890 * 180.02562 * 12 11 9 14 14 O 1.21281 * 120.00175 * 354.98553 * 13 12 11 15 15 C 1.50704 * 119.99983 * 174.99193 * 13 12 11 16 16 C 1.50696 * 115.55149 * 279.07905 * 15 13 12 17 17 N 1.34777 * 119.99579 * 294.18259 * 16 15 13 18 18 O 1.21278 * 120.00408 * 114.17997 * 16 15 13 19 19 C 1.53003 * 117.49858 * 133.36718 * 15 13 12 20 20 C 1.52999 * 59.99991 * 252.51030 * 19 15 13 21 21 N 1.46494 * 109.47360 * 101.29693 * 9 8 7 22 22 C 1.36933 * 120.00000 * 303.81256 * 21 9 8 23 23 H 1.08001 * 120.00421 * 354.57782 * 22 21 9 24 24 C 1.38815 * 120.00207 * 174.29592 * 22 21 9 25 25 N 1.31622 * 119.99718 * 0.27825 * 24 22 21 26 26 Si 1.86792 * 120.00313 * 180.27709 * 24 22 21 27 27 H 1.48492 * 109.47396 * 60.00117 * 26 24 22 28 28 H 1.48505 * 109.47104 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47126 * 300.00138 * 26 24 22 30 30 H 1.09001 * 109.46980 * 59.99921 * 1 2 3 31 31 H 1.09005 * 109.47096 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47505 * 299.99903 * 1 2 3 33 33 H 1.08003 * 120.02506 * 359.94975 * 4 3 2 34 34 H 1.07998 * 119.97317 * 179.97438 * 5 4 3 35 35 H 1.08004 * 119.93976 * 180.02562 * 6 5 4 36 36 H 1.07997 * 119.97321 * 180.25292 * 7 6 5 37 37 H 1.08997 * 109.47686 * 295.00075 * 11 9 8 38 38 H 1.09006 * 109.46869 * 55.00516 * 11 9 8 39 39 H 0.96993 * 119.99862 * 0.02562 * 12 11 9 40 40 H 0.96996 * 119.99997 * 5.00456 * 17 16 15 41 41 H 0.97005 * 119.99994 * 184.99128 * 17 16 15 42 42 H 1.08995 * 117.49862 * 359.97438 * 19 15 13 43 43 H 1.08996 * 117.49689 * 145.02455 * 19 15 13 44 44 H 1.08997 * 117.50467 * 252.51079 * 20 19 15 45 45 H 1.09003 * 117.51766 * 107.47945 * 20 19 15 46 46 H 0.97002 * 120.00161 * 123.80804 * 21 9 8 47 47 H 0.97001 * 120.00162 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6758 0.0005 7 6 4.0559 2.5172 0.0049 8 6 3.4311 1.2849 -0.0009 9 6 4.2537 0.0221 -0.0014 10 1 3.8077 -0.7017 -0.6834 11 6 5.6786 0.3420 -0.4578 12 7 6.5089 -0.8597 -0.3446 13 6 7.8101 -0.8150 -0.6932 14 8 8.2717 0.1927 -1.1856 15 6 8.6913 -2.0172 -0.4713 16 6 9.2170 -2.1879 0.9307 17 7 10.0781 -1.2859 1.4419 18 8 8.8652 -3.1369 1.5989 19 6 9.5991 -2.4501 -1.6243 20 6 8.3689 -3.2854 -1.2641 21 7 4.2885 -0.5386 1.3516 22 6 4.7371 0.2234 2.3972 23 1 5.1468 1.2055 2.2129 24 6 4.6598 -0.2641 3.6946 25 7 4.1605 -1.4610 3.9192 26 14 5.2646 0.7784 5.1217 27 1 4.4948 2.0473 5.1689 28 1 5.0737 0.0354 6.3932 29 1 6.7068 1.0810 4.9374 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.2128 2.3204 0.0001 34 1 1.3340 4.5114 0.0011 35 1 3.7922 4.6381 0.0014 36 1 5.1343 2.5752 0.0086 37 1 5.6616 0.6755 -1.4953 38 1 6.0930 1.1304 0.1706 39 1 6.1223 -1.6874 -0.0187 40 1 10.3032 -0.4894 0.9361 41 1 10.4726 -1.4330 2.3158 42 1 9.5587 -1.8657 -2.5434 43 1 10.5769 -2.8584 -1.3689 44 1 8.5374 -4.2432 -0.7718 45 1 7.5192 -3.2504 -1.9459 46 1 3.9938 -1.4496 1.5068 47 1 4.1068 -1.8019 4.8257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198875893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:50 Heat of formation + Delta-G solvation = -65.515878 kcal Electronic energy + Delta-G solvation = -31479.537764 eV Core-core repulsion = 27242.016908 eV Total energy + Delta-G solvation = -4237.520856 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.68100 -41.11285 -39.94211 -38.54329 -37.39220 -36.89379 -35.09889 -34.65679 -33.63125 -31.43755 -30.84401 -29.15921 -27.91134 -26.75659 -25.82151 -24.19899 -23.41484 -23.11181 -22.47591 -21.35931 -20.58017 -19.39646 -19.13393 -18.65962 -18.11916 -17.28837 -17.14892 -17.02901 -16.67493 -16.46118 -16.28988 -16.13311 -15.85375 -15.58817 -15.42327 -15.03537 -14.97179 -14.68491 -14.34037 -14.15000 -13.97061 -13.57159 -13.40395 -13.08263 -12.86359 -12.74822 -12.69923 -12.58146 -12.28662 -12.23785 -11.90007 -11.87744 -11.75440 -11.68893 -11.53609 -11.23100 -10.94800 -10.80866 -10.74690 -9.98485 -9.70269 -9.08075 -8.84156 -7.89341 -5.15932 0.52184 0.66273 1.20040 1.41226 1.41808 1.47354 1.60423 2.11027 2.38242 2.54650 2.56881 2.74579 2.96077 3.43035 3.59622 3.72869 3.79543 3.84071 3.91529 4.01872 4.05832 4.24947 4.32150 4.37501 4.43403 4.44028 4.57794 4.60874 4.65350 4.67800 4.75011 4.80602 4.84435 4.88066 5.10495 5.12327 5.20335 5.42292 5.56401 5.57848 5.63188 5.74436 5.76780 6.02482 6.26274 6.29866 6.53782 6.65182 7.13416 7.19267 7.39371 8.08558 8.34982 9.32821 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009439 B = 0.004148 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.777765 B = 6748.104123 C = 7994.992670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.330 6.330 3 C 0.126 3.874 4 C -0.219 4.219 5 C -0.090 4.090 6 C -0.165 4.165 7 C -0.092 4.092 8 C -0.122 4.122 9 C 0.213 3.787 10 H 0.079 0.921 11 C 0.118 3.882 12 N -0.693 5.693 13 C 0.555 3.445 14 O -0.566 6.566 15 C -0.216 4.216 16 C 0.561 3.439 17 N -0.831 5.831 18 O -0.571 6.571 19 C -0.102 4.102 20 C -0.128 4.128 21 N -0.708 5.708 22 C -0.207 4.207 23 H 0.067 0.933 24 C -0.067 4.067 25 N -0.960 5.960 26 Si 0.947 3.053 27 H -0.283 1.283 28 H -0.300 1.300 29 H -0.285 1.285 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.050 0.950 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.141 0.859 36 H 0.125 0.875 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.405 0.595 40 H 0.415 0.585 41 H 0.410 0.590 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.112 0.888 45 H 0.121 0.879 46 H 0.376 0.624 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.058 3.833 -14.380 15.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.244 6.244 3 C 0.080 3.920 4 C -0.237 4.237 5 C -0.108 4.108 6 C -0.183 4.183 7 C -0.110 4.110 8 C -0.126 4.126 9 C 0.103 3.897 10 H 0.097 0.903 11 C -0.008 4.008 12 N -0.341 5.341 13 C 0.340 3.660 14 O -0.446 6.446 15 C -0.223 4.223 16 C 0.344 3.656 17 N -0.395 5.395 18 O -0.450 6.450 19 C -0.140 4.140 20 C -0.165 4.165 21 N -0.346 5.346 22 C -0.339 4.339 23 H 0.085 0.915 24 C -0.259 4.259 25 N -0.611 5.611 26 Si 0.778 3.222 27 H -0.209 1.209 28 H -0.226 1.226 29 H -0.211 1.211 30 H 0.090 0.910 31 H 0.128 0.872 32 H 0.069 0.931 33 H 0.162 0.838 34 H 0.168 0.832 35 H 0.159 0.841 36 H 0.143 0.857 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.240 0.760 40 H 0.245 0.755 41 H 0.242 0.758 42 H 0.139 0.861 43 H 0.143 0.857 44 H 0.130 0.870 45 H 0.139 0.861 46 H 0.208 0.792 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.165 3.835 -14.302 14.965 hybrid contribution -0.119 0.255 1.965 1.985 sum 2.046 4.091 -12.337 13.158 Atomic orbital electron populations 1.23216 0.77351 1.04877 1.01668 1.86096 1.22675 1.27150 1.88468 1.18998 0.91872 0.84872 0.96271 1.21442 1.00688 0.92209 1.09399 1.21196 0.94673 0.97489 0.97439 1.21282 0.94438 0.98498 1.04114 1.21116 1.00209 0.91678 0.98025 1.19795 0.91479 0.96502 1.04784 1.19233 0.91047 0.92161 0.87243 0.90303 1.21872 0.92134 0.86787 1.00006 1.45787 1.09520 1.14695 1.64112 1.19233 0.81992 0.87311 0.77514 1.90648 1.74684 1.33542 1.45685 1.21334 1.07848 0.99579 0.93501 1.19285 0.77874 0.81882 0.86543 1.43643 1.47015 1.25095 1.23709 1.90765 1.59119 1.33824 1.61301 1.23198 0.95854 0.99843 0.95084 1.23212 1.00939 0.92904 0.99487 1.42359 1.76329 1.13779 1.02083 1.19166 1.30109 0.98375 0.86250 0.91479 1.25277 1.03374 0.98003 0.99281 1.69772 1.53338 1.18395 1.19548 0.85601 0.78087 0.78324 0.80158 1.20926 1.22607 1.21129 0.90988 0.87237 0.93102 0.83816 0.83234 0.84099 0.85718 0.90817 0.93091 0.75962 0.75492 0.75776 0.86077 0.85661 0.86992 0.86075 0.79211 0.94585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.81 113.37 1.11 1.68 16 2 O -0.33 -11.53 9.76 -92.40 -0.90 -12.43 16 3 C 0.13 4.43 6.66 22.51 0.15 4.58 16 4 C -0.22 -6.37 9.04 22.37 0.20 -6.17 16 5 C -0.09 -2.37 10.04 22.25 0.22 -2.15 16 6 C -0.17 -4.72 10.04 22.28 0.22 -4.49 16 7 C -0.09 -3.10 8.66 22.25 0.19 -2.90 16 8 C -0.12 -4.54 4.66 -19.77 -0.09 -4.63 16 9 C 0.21 8.13 2.73 44.25 0.12 8.25 16 10 H 0.08 2.86 7.90 -2.39 -0.02 2.84 16 11 C 0.12 4.20 4.14 86.38 0.36 4.56 16 12 N -0.69 -24.11 5.39 -463.05 -2.49 -26.61 16 13 C 0.55 18.29 6.97 87.66 0.61 18.90 16 14 O -0.57 -20.54 17.02 -3.03 -0.05 -20.59 16 15 C -0.22 -6.00 2.25 -53.67 -0.12 -6.12 16 16 C 0.56 18.12 7.34 87.66 0.64 18.76 16 17 N -0.83 -21.19 8.87 -173.54 -1.54 -22.73 16 18 O -0.57 -23.37 17.54 -3.02 -0.05 -23.42 16 19 C -0.10 -1.96 9.87 30.59 0.30 -1.66 16 20 C -0.13 -2.81 9.76 30.59 0.30 -2.51 16 21 N -0.71 -33.53 4.72 -326.50 -1.54 -35.07 16 22 C -0.21 -11.04 8.82 84.03 0.74 -10.30 16 23 H 0.07 3.56 6.88 -2.91 -0.02 3.54 16 24 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 25 N -0.96 -58.70 13.07 21.65 0.28 -58.42 16 26 Si 0.95 47.51 29.55 68.60 2.03 49.54 16 27 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 28 H -0.30 -15.29 7.11 99.48 0.71 -14.58 16 29 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 30 H 0.07 1.36 7.66 -2.39 -0.02 1.34 16 31 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.05 1.22 7.66 -2.39 -0.02 1.20 16 33 H 0.14 3.35 6.30 -2.91 -0.02 3.33 16 34 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 35 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 36 H 0.13 4.15 5.84 -2.91 -0.02 4.13 16 37 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.05 2.02 5.80 -2.38 -0.01 2.01 16 39 H 0.41 14.63 8.14 -92.71 -0.75 13.87 16 40 H 0.41 9.03 8.83 -92.71 -0.82 8.21 16 41 H 0.41 9.35 8.93 -92.70 -0.83 8.52 16 42 H 0.12 2.11 8.14 -2.39 -0.02 2.10 16 43 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.11 2.52 8.00 -2.39 -0.02 2.50 16 45 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.38 19.57 8.04 -92.71 -0.75 18.82 16 47 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -75.89 398.65 -0.92 -76.81 By element: Atomic # 1 Polarization: 62.57 SS G_CDS: -2.08 Total: 60.49 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 5.43 Total: 12.43 kcal Atomic # 7 Polarization: -137.54 SS G_CDS: -5.29 Total: -142.83 kcal Atomic # 8 Polarization: -55.43 SS G_CDS: -1.01 Total: -56.44 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -75.89 -0.92 -76.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198875893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.297 kcal (2) G-P(sol) polarization free energy of solvation -75.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds