Wall clock time and date at job start Wed Apr 1 2020 05:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35890 * 117.00162 * 2 1 4 4 C 1.38761 * 120.05743 * 0.25215 * 3 2 1 5 5 C 1.38125 * 119.94309 * 180.32019 * 4 3 2 6 6 C 1.38284 * 120.05700 * 359.68165 * 5 4 3 7 7 C 1.38246 * 120.11215 * 0.02562 * 6 5 4 8 8 C 1.38164 * 120.05508 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.02578 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.46564 * 224.25024 * 9 8 7 11 11 C 1.52994 * 109.47070 * 344.25203 * 9 8 7 12 12 N 1.46507 * 109.46903 * 174.99909 * 11 9 8 13 13 C 1.34777 * 119.99716 * 180.02562 * 12 11 9 14 14 O 1.21275 * 120.00322 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.99793 * 180.02562 * 13 12 11 16 16 H 1.09002 * 110.21605 * 40.69761 * 15 13 12 17 17 C 1.54478 * 110.24271 * 278.76849 * 15 13 12 18 18 C 1.54856 * 101.66270 * 266.38963 * 17 15 13 19 19 C 1.51278 * 104.20931 * 335.19385 * 18 17 15 20 20 O 1.21278 * 124.94665 * 196.28736 * 19 18 17 21 21 N 1.34420 * 110.11270 * 16.26556 * 19 18 17 22 22 N 1.46496 * 109.46869 * 104.25372 * 9 8 7 23 23 C 1.36938 * 120.00019 * 299.93945 * 22 9 8 24 24 H 1.07993 * 120.00000 * 3.43324 * 23 22 9 25 25 C 1.38814 * 119.99808 * 183.43372 * 23 22 9 26 26 N 1.31622 * 119.99868 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 120.00166 * 359.97438 * 25 23 22 28 28 H 1.48496 * 109.47183 * 90.00295 * 27 25 23 29 29 H 1.48503 * 109.47312 * 209.99880 * 27 25 23 30 30 H 1.48497 * 109.47295 * 330.00247 * 27 25 23 31 31 H 1.08991 * 109.47144 * 60.00285 * 1 2 3 32 32 H 1.09002 * 109.47186 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46609 * 299.99599 * 1 2 3 34 34 H 1.08004 * 120.02611 * 0.02596 * 4 3 2 35 35 H 1.08005 * 119.96656 * 179.70452 * 5 4 3 36 36 H 1.07997 * 119.94317 * 180.02562 * 6 5 4 37 37 H 1.08002 * 119.96804 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.47340 * 55.00152 * 11 9 8 39 39 H 1.09007 * 109.47346 * 294.99819 * 11 9 8 40 40 H 0.96993 * 119.99919 * 0.02562 * 12 11 9 41 41 H 1.09002 * 110.97056 * 24.53852 * 17 15 13 42 42 H 1.09000 * 110.97001 * 148.29349 * 17 15 13 43 43 H 1.08997 * 110.46954 * 216.51546 * 18 17 15 44 44 H 1.09000 * 110.48883 * 93.87853 * 18 17 15 45 45 H 0.97008 * 124.34471 * 180.43315 * 21 19 18 46 46 H 0.96997 * 119.99932 * 119.94177 * 22 9 8 47 47 H 0.96998 * 119.99712 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0053 5 6 1.9210 3.6047 -0.0014 6 6 3.3020 3.6757 -0.0067 7 6 4.0560 2.5170 -0.0059 8 6 3.4311 1.2848 -0.0003 9 6 4.2538 0.0221 0.0001 10 1 3.8326 -0.6861 -0.7136 11 6 5.6939 0.3515 -0.3977 12 7 6.5201 -0.8528 -0.2821 13 6 7.8329 -0.8008 -0.5828 14 8 8.3301 0.2428 -0.9495 15 6 8.6827 -2.0398 -0.4645 16 1 8.1364 -2.9078 -0.8334 17 6 9.1059 -2.2593 1.0049 18 6 10.4829 -1.5519 1.0431 19 6 10.9602 -1.5907 -0.3919 20 8 12.1029 -1.3976 -0.7494 21 7 9.9336 -1.8710 -1.2131 22 7 4.2403 -0.5691 1.3404 23 6 4.7249 0.1405 2.4066 24 1 5.0657 1.1561 2.2693 25 6 4.7782 -0.4455 3.6638 26 7 5.2444 0.2364 4.6886 27 14 4.1882 -2.2018 3.9014 28 1 5.3217 -3.1376 3.6905 29 1 3.6617 -2.3650 5.2804 30 1 3.1121 -2.4993 2.9223 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3632 0.5138 0.8901 34 1 0.2128 2.3204 0.0098 35 1 1.3340 4.5114 -0.0021 36 1 3.7923 4.6380 -0.0115 37 1 5.1345 2.5751 -0.0105 38 1 6.0853 1.1254 0.2627 39 1 5.7139 0.7084 -1.4275 40 1 6.1224 -1.6875 0.0109 41 1 8.4026 -1.7839 1.6886 42 1 9.2062 -3.3216 1.2274 43 1 11.1726 -2.0948 1.6893 44 1 10.3732 -0.5214 1.3808 45 1 10.0099 -1.9518 -2.1768 46 1 3.8882 -1.4632 1.4726 47 1 5.2813 -0.1730 5.5671 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198967615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:07 Heat of formation + Delta-G solvation = -56.067349 kcal Electronic energy + Delta-G solvation = -31287.753595 eV Core-core repulsion = 27050.642458 eV Total energy + Delta-G solvation = -4237.111137 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.73157 -39.97890 -38.76243 -37.33620 -36.23368 -35.74056 -33.55983 -32.08683 -31.28625 -30.31294 -29.71187 -28.81865 -27.36137 -26.58499 -24.36633 -22.87681 -22.35045 -21.56158 -20.60098 -20.11183 -19.80378 -18.13098 -17.71362 -17.50484 -17.35267 -16.03276 -15.65842 -15.55900 -15.33189 -15.28902 -14.89495 -14.66653 -14.40833 -14.27464 -13.93305 -13.60327 -13.59616 -13.30036 -13.07307 -12.82927 -12.78386 -12.63593 -12.32782 -12.24040 -11.77327 -11.72729 -11.47053 -11.27806 -11.13464 -11.04196 -10.84457 -10.67724 -10.52438 -10.15451 -10.09357 -9.83222 -9.62661 -9.12171 -8.94720 -8.61523 -8.46146 -7.78500 -7.38727 -5.82682 -3.21007 1.72707 1.85370 2.60183 2.79053 3.13822 3.26345 3.31051 3.38220 3.57750 3.65503 4.15077 4.35367 4.43530 4.50417 4.73686 4.90872 5.04461 5.06828 5.09664 5.22123 5.28971 5.32296 5.33784 5.37528 5.48640 5.53124 5.61376 5.69336 5.74148 5.80334 5.85832 5.89592 5.94033 6.03354 6.17472 6.38514 6.51336 6.65293 6.68807 6.79587 6.86141 6.96198 6.97109 7.17089 7.74394 7.83335 7.91062 8.24334 8.34133 8.50096 9.10680 9.82119 10.00059 11.34971 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010605 B = 0.003664 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.740820 B = 7639.166542 C = 8961.979328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.307 6.307 3 C 0.141 3.859 4 C -0.214 4.214 5 C -0.093 4.093 6 C -0.157 4.157 7 C -0.074 4.074 8 C -0.096 4.096 9 C 0.215 3.785 10 H 0.073 0.927 11 C 0.110 3.890 12 N -0.698 5.698 13 C 0.497 3.503 14 O -0.539 6.539 15 C 0.114 3.886 16 H 0.110 0.890 17 C -0.123 4.123 18 C -0.156 4.156 19 C 0.530 3.470 20 O -0.539 6.539 21 N -0.709 5.709 22 N -0.732 5.732 23 C -0.237 4.237 24 H 0.092 0.908 25 C 0.010 3.990 26 N -0.929 5.929 27 Si 0.877 3.123 28 H -0.284 1.284 29 H -0.294 1.294 30 H -0.276 1.276 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.130 0.870 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.401 0.599 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.411 0.589 46 H 0.364 0.636 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.106 -4.361 -11.302 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.220 6.220 3 C 0.095 3.905 4 C -0.233 4.233 5 C -0.111 4.111 6 C -0.176 4.176 7 C -0.093 4.093 8 C -0.100 4.100 9 C 0.104 3.896 10 H 0.091 0.909 11 C -0.016 4.016 12 N -0.348 5.348 13 C 0.280 3.720 14 O -0.416 6.416 15 C 0.004 3.996 16 H 0.127 0.873 17 C -0.161 4.161 18 C -0.196 4.196 19 C 0.317 3.683 20 O -0.416 6.416 21 N -0.363 5.363 22 N -0.373 5.373 23 C -0.366 4.366 24 H 0.109 0.891 25 C -0.186 4.186 26 N -0.576 5.576 27 Si 0.708 3.292 28 H -0.211 1.211 29 H -0.221 1.221 30 H -0.203 1.203 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.148 0.852 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.236 0.764 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.250 0.750 46 H 0.198 0.802 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.963 -3.548 -11.441 12.617 hybrid contribution -1.278 -1.286 0.344 1.845 sum -5.241 -4.834 -11.098 13.190 Atomic orbital electron populations 1.22956 0.79501 1.03305 1.00807 1.86097 1.20299 1.27038 1.88608 1.18726 0.91701 0.83813 0.96227 1.21082 0.99353 0.92624 1.10249 1.20770 0.94671 0.96525 0.99132 1.20976 0.93834 0.98282 1.04465 1.21036 1.00190 0.91156 0.96877 1.19754 0.90694 0.96563 1.02985 1.19082 0.90817 0.91357 0.88348 0.90861 1.21947 0.92196 0.87503 0.99953 1.45667 1.08219 1.14062 1.66834 1.20770 0.82708 0.90394 0.78148 1.90707 1.72574 1.31442 1.46872 1.21565 0.86349 0.96878 0.94821 0.87253 1.22676 0.97339 1.02648 0.93448 1.22389 0.97762 1.04469 0.95024 1.20852 0.84334 0.73919 0.89188 1.90730 1.19225 1.50179 1.81454 1.45852 1.08001 1.72467 1.10005 1.42760 1.74525 1.16964 1.03029 1.18956 1.33659 0.97940 0.86090 0.89052 1.24634 1.00977 0.97325 0.95674 1.69699 1.51613 1.36499 0.99836 0.86672 0.78702 0.86624 0.77205 1.21093 1.22061 1.20257 0.93278 0.88816 0.92951 0.86269 0.86647 0.86493 0.85233 0.90460 0.92377 0.76449 0.87495 0.88822 0.87739 0.87186 0.75029 0.80213 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.33 16 2 O -0.31 -4.83 9.81 -19.40 -0.19 -5.02 16 3 C 0.14 2.35 6.66 -39.21 -0.26 2.08 16 4 C -0.21 -3.16 9.04 -39.43 -0.36 -3.52 16 5 C -0.09 -1.32 10.04 -39.61 -0.40 -1.71 16 6 C -0.16 -2.38 10.04 -39.56 -0.40 -2.77 16 7 C -0.07 -1.24 8.83 -39.61 -0.35 -1.58 16 8 C -0.10 -1.67 4.75 -104.47 -0.50 -2.17 16 9 C 0.21 3.59 2.70 -69.09 -0.19 3.40 16 10 H 0.07 1.10 7.98 -51.93 -0.41 0.69 16 11 C 0.11 1.78 3.97 -4.04 -0.02 1.76 16 12 N -0.70 -10.09 5.39 -60.29 -0.32 -10.42 16 13 C 0.50 7.41 7.00 -10.98 -0.08 7.33 16 14 O -0.54 -10.22 16.57 5.56 0.09 -10.13 16 15 C 0.11 1.27 3.92 -68.17 -0.27 1.01 16 16 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 17 C -0.12 -1.35 6.71 -24.98 -0.17 -1.52 16 18 C -0.16 -1.95 6.86 -26.62 -0.18 -2.13 16 19 C 0.53 7.85 8.43 -10.86 -0.09 7.76 16 20 O -0.54 -9.95 18.03 5.56 0.10 -9.85 16 21 N -0.71 -8.72 5.46 -53.89 -0.29 -9.01 16 22 N -0.73 -14.59 4.53 -54.55 -0.25 -14.84 16 23 C -0.24 -5.84 9.28 -15.06 -0.14 -5.98 16 24 H 0.09 2.52 7.29 -52.49 -0.38 2.14 16 25 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 26 N -0.93 -27.33 13.97 55.49 0.78 -26.56 16 27 Si 0.88 19.94 27.77 -169.99 -4.72 15.22 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 29 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 30 H -0.28 -5.93 6.47 56.52 0.37 -5.56 16 31 H 0.05 0.46 7.67 -51.93 -0.40 0.06 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.05 0.58 7.65 -51.93 -0.40 0.18 16 34 H 0.12 1.45 6.30 -52.48 -0.33 1.12 16 35 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 36 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.13 2.14 5.83 -52.49 -0.31 1.83 16 38 H 0.08 1.48 5.86 -51.93 -0.30 1.17 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.40 5.14 8.14 -40.82 -0.33 4.81 16 41 H 0.11 1.37 7.89 -51.93 -0.41 0.96 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.41 4.45 8.96 -40.82 -0.37 4.09 16 46 H 0.36 7.20 5.87 -40.82 -0.24 6.96 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 388.46 15.07 5.85 5.85 Total: -1.00 -35.01 388.46 -7.88 -42.89 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: -6.43 Total: 18.41 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -2.49 Total: 3.45 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -0.09 Total: -60.82 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: 0.00 Total: -25.00 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.72 Total: 15.22 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.01 -7.88 -42.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198967615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.176 kcal (2) G-P(sol) polarization free energy of solvation -35.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds