Wall clock time and date at job start Wed Apr 1 2020 05:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35890 * 117.00162 * 2 1 4 4 C 1.38761 * 120.05743 * 0.25215 * 3 2 1 5 5 C 1.38125 * 119.94309 * 180.32019 * 4 3 2 6 6 C 1.38284 * 120.05700 * 359.68165 * 5 4 3 7 7 C 1.38246 * 120.11215 * 0.02562 * 6 5 4 8 8 C 1.38164 * 120.05508 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.02578 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.46564 * 224.25024 * 9 8 7 11 11 C 1.52994 * 109.47070 * 344.25203 * 9 8 7 12 12 N 1.46507 * 109.46903 * 174.99909 * 11 9 8 13 13 C 1.34777 * 119.99716 * 180.02562 * 12 11 9 14 14 O 1.21275 * 120.00322 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.99793 * 180.02562 * 13 12 11 16 16 H 1.09002 * 110.21605 * 40.69761 * 15 13 12 17 17 C 1.54478 * 110.24271 * 278.76849 * 15 13 12 18 18 C 1.54856 * 101.66270 * 266.38963 * 17 15 13 19 19 C 1.51278 * 104.20931 * 335.19385 * 18 17 15 20 20 O 1.21278 * 124.94665 * 196.28736 * 19 18 17 21 21 N 1.34420 * 110.11270 * 16.26556 * 19 18 17 22 22 N 1.46496 * 109.46869 * 104.25372 * 9 8 7 23 23 C 1.36938 * 120.00019 * 299.93945 * 22 9 8 24 24 H 1.07993 * 120.00000 * 3.43324 * 23 22 9 25 25 C 1.38814 * 119.99808 * 183.43372 * 23 22 9 26 26 N 1.31622 * 119.99868 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 120.00166 * 359.97438 * 25 23 22 28 28 H 1.48496 * 109.47183 * 90.00295 * 27 25 23 29 29 H 1.48503 * 109.47312 * 209.99880 * 27 25 23 30 30 H 1.48497 * 109.47295 * 330.00247 * 27 25 23 31 31 H 1.08991 * 109.47144 * 60.00285 * 1 2 3 32 32 H 1.09002 * 109.47186 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46609 * 299.99599 * 1 2 3 34 34 H 1.08004 * 120.02611 * 0.02596 * 4 3 2 35 35 H 1.08005 * 119.96656 * 179.70452 * 5 4 3 36 36 H 1.07997 * 119.94317 * 180.02562 * 6 5 4 37 37 H 1.08002 * 119.96804 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.47340 * 55.00152 * 11 9 8 39 39 H 1.09007 * 109.47346 * 294.99819 * 11 9 8 40 40 H 0.96993 * 119.99919 * 0.02562 * 12 11 9 41 41 H 1.09002 * 110.97056 * 24.53852 * 17 15 13 42 42 H 1.09000 * 110.97001 * 148.29349 * 17 15 13 43 43 H 1.08997 * 110.46954 * 216.51546 * 18 17 15 44 44 H 1.09000 * 110.48883 * 93.87853 * 18 17 15 45 45 H 0.97008 * 124.34471 * 180.43315 * 21 19 18 46 46 H 0.96997 * 119.99932 * 119.94177 * 22 9 8 47 47 H 0.96998 * 119.99712 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0053 5 6 1.9210 3.6047 -0.0014 6 6 3.3020 3.6757 -0.0067 7 6 4.0560 2.5170 -0.0059 8 6 3.4311 1.2848 -0.0003 9 6 4.2538 0.0221 0.0001 10 1 3.8326 -0.6861 -0.7136 11 6 5.6939 0.3515 -0.3977 12 7 6.5201 -0.8528 -0.2821 13 6 7.8329 -0.8008 -0.5828 14 8 8.3301 0.2428 -0.9495 15 6 8.6827 -2.0398 -0.4645 16 1 8.1364 -2.9078 -0.8334 17 6 9.1059 -2.2593 1.0049 18 6 10.4829 -1.5519 1.0431 19 6 10.9602 -1.5907 -0.3919 20 8 12.1029 -1.3976 -0.7494 21 7 9.9336 -1.8710 -1.2131 22 7 4.2403 -0.5691 1.3404 23 6 4.7249 0.1405 2.4066 24 1 5.0657 1.1561 2.2693 25 6 4.7782 -0.4455 3.6638 26 7 5.2444 0.2364 4.6886 27 14 4.1882 -2.2018 3.9014 28 1 5.3217 -3.1376 3.6905 29 1 3.6617 -2.3650 5.2804 30 1 3.1121 -2.4993 2.9223 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3632 0.5138 0.8901 34 1 0.2128 2.3204 0.0098 35 1 1.3340 4.5114 -0.0021 36 1 3.7923 4.6380 -0.0115 37 1 5.1345 2.5751 -0.0105 38 1 6.0853 1.1254 0.2627 39 1 5.7139 0.7084 -1.4275 40 1 6.1224 -1.6875 0.0109 41 1 8.4026 -1.7839 1.6886 42 1 9.2062 -3.3216 1.2274 43 1 11.1726 -2.0948 1.6893 44 1 10.3732 -0.5214 1.3808 45 1 10.0099 -1.9518 -2.1768 46 1 3.8882 -1.4632 1.4726 47 1 5.2813 -0.1730 5.5671 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198967615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:06 Heat of formation + Delta-G solvation = -83.873638 kcal Electronic energy + Delta-G solvation = -31288.959366 eV Core-core repulsion = 27050.642458 eV Total energy + Delta-G solvation = -4238.316908 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.86133 -41.16192 -40.01728 -38.55369 -37.49039 -37.05265 -35.08170 -33.73539 -32.28839 -31.88313 -30.89696 -30.01827 -28.44538 -27.73729 -25.94232 -24.17855 -23.58152 -22.73393 -21.70358 -21.34421 -21.11924 -19.92346 -18.89355 -18.66148 -18.46799 -17.28769 -16.94538 -16.79096 -16.52270 -16.42903 -16.20635 -16.03690 -15.83172 -15.55885 -15.22297 -14.81500 -14.71842 -14.62151 -14.37176 -14.23378 -14.04141 -13.81508 -13.58439 -13.48819 -13.16237 -12.84431 -12.71759 -12.60544 -12.43474 -12.27870 -12.19706 -11.88991 -11.77749 -11.70312 -11.55941 -11.34893 -11.04086 -10.90764 -10.10824 -9.93203 -9.71940 -9.29270 -8.90939 -7.86171 -5.21752 0.50576 0.63964 1.42844 1.46738 1.51993 1.58554 1.60397 2.07601 2.52608 2.55141 2.61019 2.92112 3.32439 3.44066 3.48512 3.72476 3.81192 3.86459 3.92557 4.01366 4.18989 4.24967 4.31893 4.37798 4.43128 4.43869 4.46187 4.60161 4.63860 4.76472 4.77596 4.79572 4.84181 4.97530 4.99994 5.14220 5.18921 5.45393 5.57590 5.60863 5.68002 5.73905 5.90805 5.93044 5.99238 6.33789 6.61985 6.65855 7.14030 7.20927 7.32016 7.91280 8.14427 9.35229 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010605 B = 0.003664 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.740820 B = 7639.166542 C = 8961.979328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.325 6.325 3 C 0.129 3.871 4 C -0.217 4.217 5 C -0.090 4.090 6 C -0.170 4.170 7 C -0.093 4.093 8 C -0.124 4.124 9 C 0.220 3.780 10 H 0.099 0.901 11 C 0.121 3.879 12 N -0.691 5.691 13 C 0.492 3.508 14 O -0.586 6.586 15 C 0.121 3.879 16 H 0.161 0.839 17 C -0.115 4.115 18 C -0.158 4.158 19 C 0.522 3.478 20 O -0.583 6.583 21 N -0.698 5.698 22 N -0.727 5.727 23 C -0.199 4.199 24 H 0.050 0.950 25 C -0.062 4.062 26 N -0.988 5.988 27 Si 0.947 3.053 28 H -0.264 1.264 29 H -0.317 1.317 30 H -0.251 1.251 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.051 0.949 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.133 0.867 37 H 0.117 0.883 38 H 0.040 0.960 39 H 0.066 0.934 40 H 0.413 0.587 41 H 0.088 0.912 42 H 0.133 0.867 43 H 0.125 0.875 44 H 0.090 0.910 45 H 0.418 0.582 46 H 0.371 0.629 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.502 -6.842 -12.701 16.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.239 6.239 3 C 0.083 3.917 4 C -0.236 4.236 5 C -0.108 4.108 6 C -0.188 4.188 7 C -0.111 4.111 8 C -0.128 4.128 9 C 0.111 3.889 10 H 0.117 0.883 11 C -0.005 4.005 12 N -0.341 5.341 13 C 0.278 3.722 14 O -0.467 6.467 15 C 0.012 3.988 16 H 0.179 0.821 17 C -0.153 4.153 18 C -0.198 4.198 19 C 0.310 3.690 20 O -0.464 6.464 21 N -0.352 5.352 22 N -0.369 5.369 23 C -0.330 4.330 24 H 0.068 0.932 25 C -0.253 4.253 26 N -0.640 5.640 27 Si 0.775 3.225 28 H -0.189 1.189 29 H -0.245 1.245 30 H -0.176 1.176 31 H 0.088 0.912 32 H 0.133 0.867 33 H 0.070 0.930 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.151 0.849 37 H 0.135 0.865 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.249 0.751 41 H 0.107 0.893 42 H 0.151 0.849 43 H 0.143 0.857 44 H 0.108 0.892 45 H 0.258 0.742 46 H 0.205 0.795 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.423 -6.072 -12.923 15.657 hybrid contribution -0.632 -0.349 0.672 0.986 sum -7.055 -6.421 -12.251 15.527 Atomic orbital electron populations 1.23263 0.77240 1.05144 1.01754 1.86050 1.22679 1.26638 1.88513 1.18901 0.91635 0.84945 0.96252 1.21458 1.00817 0.92142 1.09177 1.21183 0.94401 0.97813 0.97435 1.21263 0.94707 0.98449 1.04356 1.21109 0.99956 0.92164 0.97913 1.19816 0.91592 0.96556 1.04808 1.19210 0.90849 0.91911 0.86964 0.88317 1.21684 0.91941 0.87415 0.99457 1.45612 1.08212 1.13874 1.66436 1.21531 0.82794 0.91110 0.76811 1.90695 1.73360 1.33626 1.48978 1.21772 0.85440 0.96326 0.95305 0.82134 1.22724 0.95428 1.04563 0.92603 1.22419 0.99431 1.03948 0.93982 1.21244 0.84087 0.73260 0.90368 1.90699 1.21110 1.52261 1.82298 1.45863 1.07818 1.71039 1.10462 1.42610 1.74252 1.16896 1.03120 1.18713 1.30885 0.96214 0.87167 0.93150 1.25374 1.02508 1.02011 0.95364 1.69916 1.54917 1.38854 1.00275 0.85540 0.79282 0.81485 0.76169 1.18908 1.24492 1.17598 0.91225 0.86678 0.93011 0.83502 0.83438 0.84878 0.86481 0.94213 0.91545 0.75060 0.89334 0.84870 0.85683 0.89206 0.74196 0.79497 0.93985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.50 16 2 O -0.33 -9.41 9.81 -92.32 -0.91 -10.32 16 3 C 0.13 4.09 6.66 22.51 0.15 4.24 16 4 C -0.22 -5.93 9.04 22.37 0.20 -5.72 16 5 C -0.09 -2.39 10.04 22.25 0.22 -2.16 16 6 C -0.17 -5.08 10.04 22.28 0.22 -4.86 16 7 C -0.09 -3.20 8.83 22.25 0.20 -3.00 16 8 C -0.12 -4.30 4.75 -19.77 -0.09 -4.39 16 9 C 0.22 7.18 2.70 44.25 0.12 7.30 16 10 H 0.10 2.74 7.98 -2.38 -0.02 2.72 16 11 C 0.12 3.98 3.97 86.38 0.34 4.32 16 12 N -0.69 -19.25 5.39 -463.04 -2.49 -21.75 16 13 C 0.49 14.31 7.00 87.66 0.61 14.92 16 14 O -0.59 -22.74 16.57 -3.02 -0.05 -22.79 16 15 C 0.12 2.39 3.92 44.70 0.18 2.56 16 16 H 0.16 1.66 8.14 -2.39 -0.02 1.64 16 17 C -0.12 -2.25 6.71 31.73 0.21 -2.03 16 18 C -0.16 -3.83 6.86 30.67 0.21 -3.62 16 19 C 0.52 15.29 8.43 87.90 0.74 16.03 16 20 O -0.58 -21.87 18.03 -3.02 -0.05 -21.93 16 21 N -0.70 -16.15 5.46 -442.99 -2.42 -18.57 16 22 N -0.73 -28.19 4.53 -326.51 -1.48 -29.67 16 23 C -0.20 -9.97 9.28 84.03 0.78 -9.19 16 24 H 0.05 2.94 7.29 -2.91 -0.02 2.92 16 25 C -0.06 -3.33 5.50 84.86 0.47 -2.87 16 26 N -0.99 -60.29 13.97 21.65 0.30 -59.98 16 27 Si 0.95 40.61 27.77 68.60 1.90 42.51 16 28 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 29 H -0.32 -14.77 7.11 99.48 0.71 -14.06 16 30 H -0.25 -9.59 6.47 99.48 0.64 -8.94 16 31 H 0.07 1.04 7.67 -2.39 -0.02 1.02 16 32 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.00 7.65 -2.39 -0.02 0.98 16 34 H 0.15 3.08 6.30 -2.91 -0.02 3.06 16 35 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 36 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 37 H 0.12 4.20 5.83 -2.91 -0.02 4.18 16 38 H 0.04 1.62 5.86 -2.39 -0.01 1.61 16 39 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.41 9.52 8.14 -92.71 -0.75 8.77 16 41 H 0.09 2.14 7.89 -2.39 -0.02 2.12 16 42 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.42 8.45 8.96 -92.70 -0.83 7.62 16 46 H 0.37 13.62 5.87 -92.71 -0.54 13.07 16 47 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -81.09 388.46 -0.67 -81.76 By element: Atomic # 1 Polarization: 48.86 SS G_CDS: -1.15 Total: 47.71 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 5.68 Total: 13.02 kcal Atomic # 7 Polarization: -123.88 SS G_CDS: -6.09 Total: -129.97 kcal Atomic # 8 Polarization: -54.03 SS G_CDS: -1.01 Total: -55.04 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 1.90 Total: 42.51 kcal Total: -81.09 -0.67 -81.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198967615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.114 kcal (2) G-P(sol) polarization free energy of solvation -81.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds