Wall clock time and date at job start Wed Apr 1 2020 04:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46505 * 119.99998 * 2 1 4 4 C 1.50692 * 109.47505 * 270.00654 * 3 2 1 5 5 O 1.21280 * 120.00136 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00276 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00078 * 179.97438 * 6 4 3 8 8 H 1.08996 * 110.91542 * 37.44672 * 7 6 4 9 9 C 1.54913 * 111.00503 * 273.54320 * 7 6 4 10 10 N 1.47421 * 104.92565 * 204.86502 * 9 7 6 11 11 C 1.36942 * 125.64360 * 204.15489 * 10 9 7 12 12 H 1.08003 * 120.00198 * 354.91993 * 11 10 9 13 13 C 1.38812 * 119.99949 * 174.92366 * 11 10 9 14 14 N 1.31620 * 120.00097 * 5.98741 * 13 11 10 15 15 Si 1.86797 * 120.00022 * 185.99362 * 13 11 10 16 16 H 1.48498 * 109.47399 * 94.98795 * 15 13 11 17 17 H 1.48501 * 109.47249 * 214.98957 * 15 13 11 18 18 H 1.48502 * 109.47072 * 334.98885 * 15 13 11 19 19 C 1.47292 * 108.56183 * 24.15562 * 10 9 7 20 20 C 1.54318 * 107.30360 * 358.92465 * 19 10 9 21 21 H 1.09003 * 110.86762 * 219.38187 * 20 19 10 22 22 O 1.42901 * 110.72160 * 96.18541 * 20 19 10 23 23 C 1.34771 * 120.00185 * 180.02562 * 2 1 3 24 24 O 1.21560 * 120.00336 * 175.46341 * 23 2 1 25 25 C 1.47853 * 120.00137 * 355.45676 * 23 2 1 26 26 C 1.39574 * 120.14732 * 221.18948 * 25 23 2 27 27 C 1.37953 * 119.85097 * 179.74386 * 26 25 23 28 28 C 1.38359 * 120.14674 * 0.53693 * 27 26 25 29 29 C 1.38363 * 120.29021 * 359.74002 * 28 27 26 30 30 C 1.37949 * 120.14710 * 359.97438 * 29 28 27 31 31 H 1.08992 * 109.47117 * 95.20098 * 1 2 3 32 32 H 1.09004 * 109.46829 * 215.19694 * 1 2 3 33 33 H 1.08997 * 109.46835 * 335.19224 * 1 2 3 34 34 H 1.08999 * 109.46837 * 150.00493 * 3 2 1 35 35 H 1.09000 * 109.46698 * 30.00708 * 3 2 1 36 36 H 0.96999 * 119.99422 * 359.97438 * 6 4 3 37 37 H 1.08997 * 110.36197 * 323.75772 * 9 7 6 38 38 H 1.08991 * 110.36475 * 85.96640 * 9 7 6 39 39 H 0.96995 * 120.00302 * 180.02562 * 14 13 11 40 40 H 1.08998 * 109.85033 * 239.49763 * 19 10 9 41 41 H 1.08996 * 110.00067 * 118.42930 * 19 10 9 42 42 H 0.96698 * 113.99722 * 66.47363 * 22 20 19 43 43 H 1.08003 * 120.07078 * 0.02562 * 26 25 23 44 44 H 1.07998 * 119.93054 * 180.27737 * 27 26 25 45 45 H 1.07994 * 119.85518 * 179.71802 * 28 27 26 46 46 H 1.07999 * 119.92635 * 180.02562 * 29 28 27 47 47 H 1.07997 * 120.07819 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4207 5 8 2.0549 1.0213 -2.3426 6 7 3.1116 2.8513 -1.6670 7 6 3.3561 3.2740 -3.0481 8 1 2.5038 3.0361 -3.6846 9 6 4.6565 2.6391 -3.6012 10 7 5.1037 3.5559 -4.6655 11 6 5.9018 3.2186 -5.7260 12 1 6.3252 2.2271 -5.7894 13 6 6.1666 4.1512 -6.7196 14 7 5.7498 5.3924 -6.5851 15 14 7.1143 3.6445 -8.2475 16 1 6.1590 3.2902 -9.3278 17 1 7.9715 4.7716 -8.6947 18 1 7.9659 2.4688 -7.9346 19 6 4.5485 4.8933 -4.3963 20 6 3.6951 4.7866 -3.1150 21 1 2.7863 5.3820 -3.2030 22 8 4.4504 5.1866 -1.9697 23 6 2.1389 -1.1671 -0.0005 24 8 3.3517 -1.1688 -0.0838 25 6 1.4032 -2.4456 0.1003 26 6 1.8943 -3.4755 0.9043 27 6 1.2001 -4.6639 0.9981 28 6 0.0254 -4.8403 0.2887 29 6 -0.4638 -3.8256 -0.5146 30 6 0.2175 -2.6301 -0.6126 31 1 -0.3633 -0.0932 -1.0234 32 1 -0.3633 -0.8398 0.5924 33 1 -0.3633 0.9328 0.4312 34 1 3.1500 1.1384 0.5138 35 1 1.6085 2.0283 0.5140 36 1 3.4268 3.3970 -0.9296 37 1 5.4098 2.5728 -2.8162 38 1 4.4508 1.6512 -4.0130 39 1 5.9345 6.0439 -7.2795 40 1 3.9246 5.2102 -5.2320 41 1 5.3566 5.6089 -4.2449 42 1 4.6879 6.1240 -1.9630 43 1 2.8133 -3.3405 1.4553 44 1 1.5766 -5.4600 1.6233 45 1 -0.5118 -5.7743 0.3620 46 1 -1.3816 -3.9694 -1.0654 47 1 -0.1652 -1.8389 -1.2403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220262906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:18 Heat of formation + Delta-G solvation = -41.529595 kcal Electronic energy + Delta-G solvation = -30383.812718 eV Core-core repulsion = 26147.331985 eV Total energy + Delta-G solvation = -4236.480733 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.74089 -39.54154 -38.47324 -37.70392 -35.65588 -34.81652 -33.89826 -31.95176 -31.54956 -31.28570 -29.22087 -28.17454 -27.09076 -26.49618 -24.45313 -23.45615 -22.84501 -21.08873 -20.45973 -19.93347 -19.68133 -17.70141 -17.59732 -16.97592 -16.89770 -16.79402 -16.32980 -15.45866 -15.31478 -14.92306 -14.82428 -14.61844 -14.47396 -13.98108 -13.88046 -13.68272 -13.59507 -13.16107 -13.03908 -12.96882 -12.75065 -12.67064 -12.51781 -12.30010 -11.93390 -11.83787 -11.34110 -11.26956 -10.92001 -10.82997 -10.49241 -10.41606 -10.12414 -10.11161 -9.92846 -9.79355 -9.33663 -9.29197 -9.21186 -8.80862 -8.66869 -8.60060 -6.84145 -5.73642 -3.05086 0.67128 1.04988 2.51775 2.65255 2.82312 3.41309 3.43192 3.47731 3.49735 3.55483 4.21341 4.49675 4.54080 4.56098 4.62228 4.74573 4.77796 4.93190 4.95534 5.08145 5.17153 5.19402 5.24855 5.30197 5.39880 5.42908 5.51728 5.54163 5.67746 5.74366 5.89108 6.02365 6.02846 6.07476 6.12593 6.13980 6.24461 6.56218 6.64983 6.73976 6.98816 7.06956 7.33736 7.45656 7.74729 7.81312 7.96571 8.07095 8.21924 8.48407 9.20211 9.80484 10.45852 11.39331 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015558 B = 0.002309 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.247439 B =12123.024492 C =13191.697799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.594 5.594 3 C 0.098 3.902 4 C 0.493 3.507 5 O -0.534 6.534 6 N -0.707 5.707 7 C 0.142 3.858 8 H 0.100 0.900 9 C 0.131 3.869 10 N -0.601 5.601 11 C -0.222 4.222 12 H 0.079 0.921 13 C -0.010 4.010 14 N -0.926 5.926 15 Si 0.913 3.087 16 H -0.289 1.289 17 H -0.291 1.291 18 H -0.280 1.280 19 C 0.153 3.847 20 C 0.069 3.931 21 H 0.061 0.939 22 O -0.567 6.567 23 C 0.564 3.436 24 O -0.524 6.524 25 C -0.124 4.124 26 C -0.068 4.068 27 C -0.128 4.128 28 C -0.100 4.100 29 C -0.127 4.127 30 C -0.090 4.090 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.406 0.594 37 H 0.026 0.974 38 H 0.044 0.956 39 H 0.252 0.748 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.379 0.621 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.125 0.875 46 H 0.128 0.872 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.292 -10.840 19.974 27.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.327 5.327 3 C -0.028 4.028 4 C 0.277 3.723 5 O -0.410 6.410 6 N -0.359 5.359 7 C 0.036 3.964 8 H 0.118 0.882 9 C 0.004 3.996 10 N -0.328 5.328 11 C -0.350 4.350 12 H 0.097 0.903 13 C -0.205 4.205 14 N -0.574 5.574 15 Si 0.744 3.256 16 H -0.216 1.216 17 H -0.218 1.218 18 H -0.206 1.206 19 C 0.028 3.972 20 C 0.009 3.991 21 H 0.079 0.921 22 O -0.373 6.373 23 C 0.352 3.648 24 O -0.400 6.400 25 C -0.127 4.127 26 C -0.087 4.087 27 C -0.146 4.146 28 C -0.118 4.118 29 C -0.145 4.145 30 C -0.108 4.108 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.241 0.759 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.227 0.773 43 H 0.149 0.851 44 H 0.146 0.854 45 H 0.143 0.857 46 H 0.146 0.854 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.904 -11.856 19.219 27.620 hybrid contribution 0.705 0.779 -0.848 1.350 sum -15.199 -11.078 18.371 26.291 Atomic orbital electron populations 1.22142 0.78895 1.03336 1.02342 1.47231 1.07141 1.04803 1.73505 1.21353 1.00154 0.86236 0.95088 1.21066 0.78311 0.81163 0.91771 1.90704 1.51292 1.53085 1.45905 1.45745 1.57193 1.23643 1.09367 1.22298 0.99318 0.92630 0.82174 0.88169 1.21827 0.92198 0.94077 0.91471 1.44347 1.58170 1.04606 1.25657 1.19113 1.21458 0.97748 0.96697 0.90267 1.24804 1.01226 0.95756 0.98758 1.69917 1.51554 1.01878 1.34100 0.86063 0.79056 0.77344 0.83162 1.21578 1.21766 1.20570 1.21900 0.95390 0.88575 0.91341 1.23498 0.93897 0.93792 0.87930 0.92138 1.86255 1.75850 1.31185 1.44056 1.18371 0.87040 0.83458 0.75884 1.90827 1.13651 1.86965 1.48548 1.19849 0.96569 0.94771 1.01535 1.21204 0.98855 0.91951 0.96644 1.21127 0.95683 0.97335 1.00411 1.21364 0.95914 0.98878 0.95685 1.21142 1.00573 0.93275 0.99558 1.21663 0.93262 0.98261 0.97619 0.91707 0.90392 0.90774 0.86835 0.87344 0.75852 0.95662 0.93763 0.93766 0.92448 0.93150 0.77301 0.85139 0.85373 0.85668 0.85356 0.84567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 8.97 59.85 0.54 1.13 16 2 N -0.59 -6.92 2.36 -184.08 -0.43 -7.35 16 3 C 0.10 1.11 5.89 -5.19 -0.03 1.07 16 4 C 0.49 7.73 7.90 -10.99 -0.09 7.64 16 5 O -0.53 -10.58 16.18 5.56 0.09 -10.49 16 6 N -0.71 -10.93 5.18 -51.73 -0.27 -11.19 16 7 C 0.14 2.70 3.20 -65.78 -0.21 2.49 16 8 H 0.10 2.03 7.73 -51.93 -0.40 1.62 16 9 C 0.13 3.07 6.91 -2.53 -0.02 3.05 16 10 N -0.60 -16.01 3.40 -169.86 -0.58 -16.59 16 11 C -0.22 -6.46 10.27 -15.06 -0.15 -6.61 16 12 H 0.08 2.27 7.84 -52.48 -0.41 1.86 16 13 C -0.01 -0.28 5.48 -17.43 -0.10 -0.38 16 14 N -0.93 -27.24 10.37 55.49 0.58 -26.66 16 15 Si 0.91 22.73 29.56 -169.99 -5.02 17.71 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 C 0.15 3.65 5.16 -2.92 -0.02 3.63 16 20 C 0.07 1.24 4.20 -24.90 -0.10 1.13 16 21 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 22 O -0.57 -8.96 12.13 -35.23 -0.43 -9.39 16 23 C 0.56 7.98 7.32 -12.33 -0.09 7.89 16 24 O -0.52 -9.53 16.57 5.31 0.09 -9.44 16 25 C -0.12 -1.43 5.16 -104.96 -0.54 -1.97 16 26 C -0.07 -0.68 9.65 -39.19 -0.38 -1.06 16 27 C -0.13 -0.99 10.03 -39.64 -0.40 -1.39 16 28 C -0.10 -0.71 10.04 -39.49 -0.40 -1.10 16 29 C -0.13 -0.96 10.03 -39.64 -0.40 -1.36 16 30 C -0.09 -0.85 7.62 -39.19 -0.30 -1.15 16 31 H 0.06 0.55 6.85 -51.93 -0.36 0.19 16 32 H 0.08 0.50 6.00 -51.93 -0.31 0.19 16 33 H 0.07 0.41 7.83 -51.93 -0.41 0.00 16 34 H 0.11 1.29 7.49 -51.93 -0.39 0.90 16 35 H 0.11 0.76 7.86 -51.93 -0.41 0.35 16 36 H 0.41 5.35 7.56 -40.82 -0.31 5.04 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.06 1.50 7.28 -51.93 -0.38 1.12 16 41 H 0.05 1.30 7.57 -51.93 -0.39 0.91 16 42 H 0.38 4.59 9.12 45.56 0.42 5.01 16 43 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 44 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 47 H 0.14 1.21 5.52 -52.49 -0.29 0.92 16 LS Contribution 388.51 15.07 5.85 5.85 Total: -1.00 -38.18 388.51 -8.54 -46.71 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -5.73 Total: 7.84 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: -2.68 Total: 13.01 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -0.71 Total: -61.80 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.25 Total: -29.32 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.18 -8.54 -46.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220262906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.181 kcal (2) G-P(sol) polarization free energy of solvation -38.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds