Wall clock time and date at job start Wed Apr 1 2020 04:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46505 * 119.99998 * 2 1 4 4 C 1.50692 * 109.47505 * 270.00654 * 3 2 1 5 5 O 1.21280 * 120.00136 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00276 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00078 * 179.97438 * 6 4 3 8 8 H 1.08996 * 110.91542 * 37.44672 * 7 6 4 9 9 C 1.54913 * 111.00503 * 273.54320 * 7 6 4 10 10 N 1.47421 * 104.92565 * 204.86502 * 9 7 6 11 11 C 1.36942 * 125.64360 * 204.15489 * 10 9 7 12 12 H 1.08003 * 120.00198 * 354.91993 * 11 10 9 13 13 C 1.38812 * 119.99949 * 174.92366 * 11 10 9 14 14 N 1.31620 * 120.00097 * 5.98741 * 13 11 10 15 15 Si 1.86797 * 120.00022 * 185.99362 * 13 11 10 16 16 H 1.48498 * 109.47399 * 94.98795 * 15 13 11 17 17 H 1.48501 * 109.47249 * 214.98957 * 15 13 11 18 18 H 1.48502 * 109.47072 * 334.98885 * 15 13 11 19 19 C 1.47292 * 108.56183 * 24.15562 * 10 9 7 20 20 C 1.54318 * 107.30360 * 358.92465 * 19 10 9 21 21 H 1.09003 * 110.86762 * 219.38187 * 20 19 10 22 22 O 1.42901 * 110.72160 * 96.18541 * 20 19 10 23 23 C 1.34771 * 120.00185 * 180.02562 * 2 1 3 24 24 O 1.21560 * 120.00336 * 175.46341 * 23 2 1 25 25 C 1.47853 * 120.00137 * 355.45676 * 23 2 1 26 26 C 1.39574 * 120.14732 * 221.18948 * 25 23 2 27 27 C 1.37953 * 119.85097 * 179.74386 * 26 25 23 28 28 C 1.38359 * 120.14674 * 0.53693 * 27 26 25 29 29 C 1.38363 * 120.29021 * 359.74002 * 28 27 26 30 30 C 1.37949 * 120.14710 * 359.97438 * 29 28 27 31 31 H 1.08992 * 109.47117 * 95.20098 * 1 2 3 32 32 H 1.09004 * 109.46829 * 215.19694 * 1 2 3 33 33 H 1.08997 * 109.46835 * 335.19224 * 1 2 3 34 34 H 1.08999 * 109.46837 * 150.00493 * 3 2 1 35 35 H 1.09000 * 109.46698 * 30.00708 * 3 2 1 36 36 H 0.96999 * 119.99422 * 359.97438 * 6 4 3 37 37 H 1.08997 * 110.36197 * 323.75772 * 9 7 6 38 38 H 1.08991 * 110.36475 * 85.96640 * 9 7 6 39 39 H 0.96995 * 120.00302 * 180.02562 * 14 13 11 40 40 H 1.08998 * 109.85033 * 239.49763 * 19 10 9 41 41 H 1.08996 * 110.00067 * 118.42930 * 19 10 9 42 42 H 0.96698 * 113.99722 * 66.47363 * 22 20 19 43 43 H 1.08003 * 120.07078 * 0.02562 * 26 25 23 44 44 H 1.07998 * 119.93054 * 180.27737 * 27 26 25 45 45 H 1.07994 * 119.85518 * 179.71802 * 28 27 26 46 46 H 1.07999 * 119.92635 * 180.02562 * 29 28 27 47 47 H 1.07997 * 120.07819 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4207 5 8 2.0549 1.0213 -2.3426 6 7 3.1116 2.8513 -1.6670 7 6 3.3561 3.2740 -3.0481 8 1 2.5038 3.0361 -3.6846 9 6 4.6565 2.6391 -3.6012 10 7 5.1037 3.5559 -4.6655 11 6 5.9018 3.2186 -5.7260 12 1 6.3252 2.2271 -5.7894 13 6 6.1666 4.1512 -6.7196 14 7 5.7498 5.3924 -6.5851 15 14 7.1143 3.6445 -8.2475 16 1 6.1590 3.2902 -9.3278 17 1 7.9715 4.7716 -8.6947 18 1 7.9659 2.4688 -7.9346 19 6 4.5485 4.8933 -4.3963 20 6 3.6951 4.7866 -3.1150 21 1 2.7863 5.3820 -3.2030 22 8 4.4504 5.1866 -1.9697 23 6 2.1389 -1.1671 -0.0005 24 8 3.3517 -1.1688 -0.0838 25 6 1.4032 -2.4456 0.1003 26 6 1.8943 -3.4755 0.9043 27 6 1.2001 -4.6639 0.9981 28 6 0.0254 -4.8403 0.2887 29 6 -0.4638 -3.8256 -0.5146 30 6 0.2175 -2.6301 -0.6126 31 1 -0.3633 -0.0932 -1.0234 32 1 -0.3633 -0.8398 0.5924 33 1 -0.3633 0.9328 0.4312 34 1 3.1500 1.1384 0.5138 35 1 1.6085 2.0283 0.5140 36 1 3.4268 3.3970 -0.9296 37 1 5.4098 2.5728 -2.8162 38 1 4.4508 1.6512 -4.0130 39 1 5.9345 6.0439 -7.2795 40 1 3.9246 5.2102 -5.2320 41 1 5.3566 5.6089 -4.2449 42 1 4.6879 6.1240 -1.9630 43 1 2.8133 -3.3405 1.4553 44 1 1.5766 -5.4600 1.6233 45 1 -0.5118 -5.7743 0.3620 46 1 -1.3816 -3.9694 -1.0654 47 1 -0.1652 -1.8389 -1.2403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220262906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:17 Heat of formation + Delta-G solvation = -71.436335 kcal Electronic energy + Delta-G solvation = -30385.109571 eV Core-core repulsion = 26147.331985 eV Total energy + Delta-G solvation = -4237.777586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.72217 -40.80545 -39.56968 -38.99537 -36.65735 -36.47806 -35.42698 -33.68205 -32.55222 -31.93681 -30.65037 -29.63248 -28.49788 -27.58233 -26.35810 -24.31374 -23.50095 -22.59343 -22.03285 -21.45882 -20.70468 -19.29665 -18.51741 -18.44081 -18.24790 -17.72052 -17.27822 -16.91214 -16.56099 -16.36548 -16.08254 -15.79452 -15.64908 -15.34822 -14.91895 -14.84001 -14.53881 -14.50674 -14.44506 -14.29471 -14.04012 -13.83035 -13.68142 -13.33073 -13.22813 -12.89762 -12.80515 -12.75448 -12.56000 -12.32625 -12.12760 -11.97784 -11.94905 -11.92270 -11.26023 -11.09061 -10.88810 -10.79718 -10.12410 -9.98844 -9.89302 -9.76743 -8.99095 -7.94186 -5.29141 -0.05046 0.41067 1.41364 1.43727 1.50744 1.53479 1.61221 1.76161 2.26153 2.46194 2.80489 3.14741 3.25201 3.43218 3.56016 3.75175 3.87652 3.90648 3.92996 4.01335 4.15453 4.20438 4.23294 4.26770 4.34826 4.45648 4.48680 4.54184 4.61951 4.65290 4.77307 4.83778 4.89226 4.99190 5.07241 5.26288 5.32014 5.39305 5.41257 5.42556 5.47609 5.51643 5.60690 5.95800 6.10426 6.16866 6.56795 6.87761 6.96722 7.02538 7.25591 7.65435 8.30307 9.16232 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015558 B = 0.002309 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.247439 B =12123.024492 C =13191.697799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.593 5.593 3 C 0.102 3.898 4 C 0.490 3.510 5 O -0.580 6.580 6 N -0.694 5.694 7 C 0.155 3.845 8 H 0.090 0.910 9 C 0.132 3.868 10 N -0.622 5.622 11 C -0.251 4.251 12 H 0.070 0.930 13 C -0.057 4.057 14 N -0.944 5.944 15 Si 0.979 3.021 16 H -0.284 1.284 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.157 3.843 20 C 0.096 3.904 21 H 0.099 0.901 22 O -0.564 6.564 23 C 0.554 3.446 24 O -0.582 6.582 25 C -0.150 4.150 26 C -0.085 4.085 27 C -0.127 4.127 28 C -0.093 4.093 29 C -0.126 4.126 30 C -0.096 4.096 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.163 0.837 36 H 0.421 0.579 37 H 0.017 0.983 38 H 0.017 0.983 39 H 0.251 0.749 40 H 0.029 0.971 41 H 0.025 0.975 42 H 0.399 0.601 43 H 0.122 0.878 44 H 0.153 0.847 45 H 0.158 0.842 46 H 0.155 0.845 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.538 -11.278 21.565 30.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.323 5.323 3 C -0.024 4.024 4 C 0.276 3.724 5 O -0.459 6.459 6 N -0.348 5.348 7 C 0.048 3.952 8 H 0.108 0.892 9 C 0.005 3.995 10 N -0.349 5.349 11 C -0.380 4.380 12 H 0.088 0.912 13 C -0.251 4.251 14 N -0.592 5.592 15 Si 0.807 3.193 16 H -0.211 1.211 17 H -0.212 1.212 18 H -0.199 1.199 19 C 0.032 3.968 20 C 0.036 3.964 21 H 0.117 0.883 22 O -0.373 6.373 23 C 0.344 3.656 24 O -0.462 6.462 25 C -0.153 4.153 26 C -0.104 4.104 27 C -0.145 4.145 28 C -0.111 4.111 29 C -0.144 4.144 30 C -0.115 4.115 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.181 0.819 36 H 0.259 0.741 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.250 0.750 43 H 0.140 0.860 44 H 0.170 0.830 45 H 0.176 0.824 46 H 0.173 0.827 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.191 -12.254 20.872 30.278 hybrid contribution 1.395 0.859 -1.324 2.106 sum -16.797 -11.395 19.548 28.180 Atomic orbital electron populations 1.22382 0.76477 1.05720 1.02497 1.47437 1.08722 1.04246 1.71909 1.21538 1.01468 0.87414 0.92020 1.21940 0.76979 0.80214 0.93262 1.90688 1.53116 1.54275 1.47811 1.45586 1.57013 1.24040 1.08127 1.21859 0.96385 0.93023 0.83901 0.89241 1.21841 0.94287 0.92858 0.90509 1.44625 1.58040 1.06425 1.25789 1.19366 1.22578 0.97743 0.98292 0.91194 1.25614 1.02318 0.95799 1.01332 1.70100 1.52079 1.02434 1.34631 0.85059 0.77805 0.77165 0.79283 1.21104 1.21204 1.19945 1.21809 0.94802 0.86655 0.93529 1.23109 0.94090 0.93507 0.85696 0.88321 1.86219 1.75655 1.33222 1.42194 1.18969 0.86655 0.85058 0.74900 1.90777 1.16019 1.87930 1.51506 1.19828 0.97748 0.94147 1.03602 1.21307 0.99127 0.92855 0.97099 1.21437 0.95711 0.96832 1.00474 1.21789 0.95328 0.99823 0.94178 1.21491 1.01128 0.92400 0.99345 1.21740 0.92837 0.99393 0.97488 0.92474 0.88961 0.87641 0.86955 0.81949 0.74094 0.96516 0.96506 0.93923 0.95255 0.95658 0.74960 0.86045 0.82973 0.82430 0.82699 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.97 8.97 127.77 1.15 2.12 16 2 N -0.59 -13.42 2.36 -854.57 -2.02 -15.44 16 3 C 0.10 2.14 5.89 85.63 0.50 2.64 16 4 C 0.49 15.11 7.90 87.65 0.69 15.80 16 5 O -0.58 -23.48 16.18 -3.03 -0.05 -23.53 16 6 N -0.69 -20.70 5.18 -435.97 -2.26 -22.96 16 7 C 0.16 5.92 3.20 46.39 0.15 6.06 16 8 H 0.09 3.65 7.73 -2.39 -0.02 3.64 16 9 C 0.13 6.42 6.91 86.86 0.60 7.02 16 10 N -0.62 -34.39 3.40 -691.33 -2.35 -36.74 16 11 C -0.25 -15.15 10.27 84.03 0.86 -14.29 16 12 H 0.07 4.20 7.84 -2.91 -0.02 4.18 16 13 C -0.06 -3.35 5.48 84.86 0.47 -2.89 16 14 N -0.94 -56.65 10.37 21.65 0.22 -56.42 16 15 Si 0.98 47.50 29.56 68.60 2.03 49.53 16 16 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 17 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 18 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 19 C 0.16 7.63 5.16 86.68 0.45 8.08 16 20 C 0.10 3.34 4.20 31.78 0.13 3.47 16 21 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 22 O -0.56 -16.52 12.13 -148.98 -1.81 -18.33 16 23 C 0.55 16.24 7.32 86.79 0.64 16.88 16 24 O -0.58 -22.51 16.57 -3.90 -0.06 -22.57 16 25 C -0.15 -3.51 5.16 -20.09 -0.10 -3.61 16 26 C -0.08 -1.73 9.65 22.52 0.22 -1.52 16 27 C -0.13 -1.75 10.03 22.23 0.22 -1.53 16 28 C -0.09 -1.04 10.04 22.33 0.22 -0.81 16 29 C -0.13 -1.60 10.03 22.23 0.22 -1.38 16 30 C -0.10 -1.74 7.62 22.53 0.17 -1.57 16 31 H 0.06 0.90 6.85 -2.39 -0.02 0.89 16 32 H 0.09 1.02 6.00 -2.39 -0.01 1.00 16 33 H 0.11 0.79 7.83 -2.39 -0.02 0.77 16 34 H 0.11 2.47 7.49 -2.39 -0.02 2.46 16 35 H 0.16 1.62 7.86 -2.39 -0.02 1.60 16 36 H 0.42 10.11 7.56 -92.71 -0.70 9.41 16 37 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 40 H 0.03 1.57 7.28 -2.39 -0.02 1.55 16 41 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 42 H 0.40 8.57 9.12 -74.06 -0.68 7.90 16 43 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 44 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 45 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16 46 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 47 H 0.14 2.37 5.52 -2.91 -0.02 2.35 16 Total: -1.00 -88.98 388.51 -0.07 -89.05 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -0.36 Total: 22.95 kcal Atomic # 6 Polarization: 27.89 SS G_CDS: 6.59 Total: 34.48 kcal Atomic # 7 Polarization: -125.16 SS G_CDS: -6.41 Total: -131.56 kcal Atomic # 8 Polarization: -62.52 SS G_CDS: -1.92 Total: -64.44 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -88.98 -0.07 -89.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220262906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.613 kcal (2) G-P(sol) polarization free energy of solvation -88.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds