Wall clock time and date at job start Wed Apr 1 2020 04:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 119.99906 * 2 1 4 4 C 1.52996 * 109.47076 * 269.99767 * 3 2 1 5 5 H 1.09001 * 112.74627 * 75.77578 * 4 3 2 6 6 C 1.53520 * 113.47289 * 206.62117 * 4 3 2 7 7 C 1.53515 * 83.57381 * 140.79167 * 6 4 3 8 8 N 1.47476 * 113.47665 * 304.99908 * 4 3 2 9 9 C 1.46896 * 111.00033 * 106.53452 * 8 4 3 10 10 C 1.50696 * 109.47534 * 190.00084 * 9 8 4 11 11 O 1.21299 * 119.99943 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00475 * 179.97438 * 10 9 8 13 13 C 1.37100 * 120.00413 * 179.97438 * 12 10 9 14 14 H 1.08001 * 119.99565 * 0.02562 * 13 12 10 15 15 C 1.38948 * 120.00079 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99903 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00081 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47100 * 59.99569 * 17 15 13 19 19 H 1.48495 * 109.47252 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46886 * 300.00386 * 17 15 13 21 21 C 1.34776 * 119.99946 * 180.02562 * 2 1 3 22 22 O 1.21787 * 119.99669 * 180.02562 * 21 2 1 23 23 C 1.41549 * 120.00185 * 0.02562 * 21 2 1 24 24 C 1.35626 * 120.00232 * 186.45915 * 23 21 2 25 25 C 1.41610 * 119.99859 * 10.01272 * 24 23 21 26 26 C 1.37945 * 126.10117 * 218.53245 * 25 24 23 27 27 C 1.40318 * 106.52741 * 179.73478 * 26 25 24 28 28 C 1.35154 * 107.20240 * 0.26711 * 27 26 25 29 29 O 1.34013 * 109.03761 * 359.97438 * 28 27 26 30 30 H 1.08993 * 109.47493 * 269.99997 * 1 2 3 31 31 H 1.09008 * 109.46778 * 30.00025 * 1 2 3 32 32 H 1.09000 * 109.47230 * 149.99675 * 1 2 3 33 33 H 1.08998 * 109.47124 * 30.00028 * 3 2 1 34 34 H 1.09006 * 109.46771 * 149.99513 * 3 2 1 35 35 H 1.08998 * 114.16760 * 254.43545 * 6 4 3 36 36 H 1.08993 * 114.17374 * 27.14483 * 6 4 3 37 37 H 1.08995 * 113.47666 * 219.20534 * 7 6 4 38 38 H 1.09004 * 113.52809 * 88.74741 * 7 6 4 39 39 H 1.09004 * 109.46901 * 310.00263 * 9 8 4 40 40 H 1.09006 * 109.47291 * 69.99749 * 9 8 4 41 41 H 0.97004 * 119.99787 * 0.02562 * 12 10 9 42 42 H 0.97000 * 119.99890 * 179.97438 * 16 15 13 43 43 H 1.07998 * 119.99794 * 6.45574 * 23 21 2 44 44 H 1.07993 * 119.99901 * 190.01929 * 24 23 21 45 45 H 1.07999 * 126.74172 * 0.02562 * 26 25 24 46 46 H 1.07997 * 126.39849 * 180.25704 * 27 26 25 47 47 H 1.08007 * 125.48048 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 1.5624 2.1176 -1.9222 6 6 3.6943 2.5993 -1.5993 7 6 3.8978 1.7907 -2.8883 8 7 3.1443 0.6925 -2.2549 9 6 2.2220 0.0666 -3.2118 10 6 2.8901 -1.1252 -3.8475 11 8 4.0234 -1.4237 -3.5346 12 7 2.2284 -1.8595 -4.7637 13 6 2.8364 -2.9435 -5.3424 14 1 3.8454 -3.2092 -5.0638 15 6 2.1544 -3.7003 -6.2873 16 7 0.9264 -3.3772 -6.6259 17 14 2.9825 -5.1776 -7.0753 18 1 3.3466 -6.1605 -6.0234 19 1 2.0503 -5.8099 -8.0430 20 1 4.2093 -4.7365 -7.7864 21 6 2.1388 -1.1672 -0.0005 22 8 3.3567 -1.1671 -0.0001 23 6 1.4311 -2.3931 -0.0016 24 6 2.1027 -3.5640 0.1300 25 6 3.4750 -3.5577 0.4793 26 6 4.4445 -4.4030 -0.0192 27 6 5.6502 -4.0350 0.5971 28 6 5.3753 -3.0085 1.4321 29 8 4.0672 -2.7259 1.3616 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8901 -0.5139 32 1 -0.3634 -0.8899 -0.5139 33 1 1.6084 2.0284 0.5138 34 1 3.1499 1.1384 0.5139 35 1 3.4707 3.6533 -1.7643 36 1 4.4607 2.4330 -0.8425 37 1 4.9410 1.5442 -3.0861 38 1 3.3945 2.2194 -3.7550 39 1 1.3215 -0.2571 -2.6897 40 1 1.9547 0.7881 -3.9839 41 1 1.3222 -1.6207 -5.0141 42 1 0.4504 -3.9053 -7.2858 43 1 0.3563 -2.3959 -0.1072 44 1 1.5909 -4.5011 -0.0317 45 1 4.3042 -5.1901 -0.7453 46 1 6.6172 -4.4877 0.4348 47 1 6.0943 -2.4974 2.0554 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230637445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:03 Heat of formation + Delta-G solvation = 34.629689 kcal Electronic energy + Delta-G solvation = -32363.764341 eV Core-core repulsion = 28130.586122 eV Total energy + Delta-G solvation = -4233.178219 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.98700 -40.38669 -39.06113 -37.57864 -35.24385 -33.76976 -33.72765 -32.42827 -31.23300 -30.60069 -29.34750 -28.04779 -26.36271 -25.66106 -24.24447 -23.60108 -22.36932 -21.24908 -20.32766 -19.41553 -19.12780 -18.47043 -17.78776 -17.51344 -16.50945 -15.92015 -15.84842 -15.64379 -15.35922 -15.32907 -14.49418 -14.36568 -14.14415 -13.87962 -13.67127 -13.58812 -13.18720 -12.89462 -12.74900 -12.47556 -12.45831 -12.39505 -12.25468 -12.14576 -11.73741 -11.55247 -11.46759 -11.38216 -11.13217 -10.93828 -10.72161 -10.38752 -10.37364 -10.11254 -9.74696 -9.45015 -9.37688 -9.23664 -8.67047 -8.20255 -7.97651 -7.83418 -7.57175 -6.31837 -3.71370 0.92656 2.52767 3.10960 3.25330 3.27032 3.29501 3.34932 3.56365 3.88819 4.06030 4.14136 4.34145 4.62125 4.91099 4.97135 4.99399 5.14900 5.17945 5.24109 5.30978 5.33320 5.39954 5.41305 5.45211 5.54243 5.58873 5.64205 5.71115 5.76584 5.81294 5.87855 5.95451 6.07678 6.10392 6.13837 6.32670 6.34097 6.35444 6.43655 6.58198 6.70812 6.87449 6.93434 7.42583 7.58358 7.64158 7.72608 8.17679 8.73760 8.75488 9.30509 9.67445 10.22652 10.86576 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008238 B = 0.004818 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3397.884969 B = 5810.674510 C = 7530.802933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.620 5.620 3 C 0.141 3.859 4 C 0.001 3.999 5 H 0.070 0.930 6 C -0.134 4.134 7 C 0.001 3.999 8 N -0.409 5.409 9 C 0.012 3.988 10 C 0.452 3.548 11 O -0.560 6.560 12 N -0.574 5.574 13 C -0.290 4.290 14 H 0.099 0.901 15 C 0.020 3.980 16 N -0.908 5.908 17 Si 0.927 3.073 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.542 3.458 22 O -0.480 6.480 23 C -0.211 4.211 24 C 0.008 3.992 25 C 0.014 3.986 26 C -0.172 4.172 27 C -0.221 4.221 28 C -0.023 4.023 29 O -0.137 6.137 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.051 0.949 41 H 0.389 0.611 42 H 0.269 0.731 43 H 0.132 0.868 44 H 0.151 0.849 45 H 0.146 0.854 46 H 0.142 0.858 47 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.995 7.814 15.834 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.356 5.356 3 C 0.018 3.982 4 C -0.110 4.110 5 H 0.088 0.912 6 C -0.173 4.173 7 C -0.128 4.128 8 N -0.131 5.131 9 C -0.120 4.120 10 C 0.236 3.764 11 O -0.442 6.442 12 N -0.212 5.212 13 C -0.420 4.420 14 H 0.117 0.883 15 C -0.180 4.180 16 N -0.550 5.550 17 Si 0.754 3.246 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.201 1.201 21 C 0.332 3.668 22 O -0.354 6.354 23 C -0.232 4.232 24 C -0.011 4.011 25 C -0.036 4.036 26 C -0.191 4.191 27 C -0.240 4.240 28 C -0.093 4.093 29 O -0.031 6.031 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.221 0.779 42 H 0.079 0.921 43 H 0.150 0.850 44 H 0.169 0.831 45 H 0.164 0.836 46 H 0.160 0.840 47 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -1.505 7.137 16.379 17.929 hybrid contribution -0.913 -0.072 -1.637 1.876 sum -2.418 7.065 14.741 16.525 Atomic orbital electron populations 1.21770 0.80510 1.02940 1.01223 1.47588 1.05986 1.06101 1.75910 1.21305 0.97737 0.84409 0.94796 1.23893 0.96580 0.93696 0.96818 0.91185 1.23129 0.97683 0.97517 0.98941 1.23752 1.01743 0.91798 0.95517 1.68939 1.14524 1.16070 1.13527 1.22474 0.96399 0.97619 0.95503 1.19675 0.87810 0.85698 0.83189 1.90563 1.18656 1.71243 1.63705 1.41843 1.16029 1.26612 1.36729 1.19606 1.00198 1.03674 1.18540 0.88272 1.25180 0.95768 0.99450 0.97645 1.69605 1.10801 1.40893 1.33691 0.85981 0.78660 0.81133 0.78823 1.19997 1.21058 1.20062 1.16907 0.87935 0.83912 0.78036 1.90925 1.12696 1.86261 1.45503 1.22317 1.00734 0.93320 1.06842 1.20580 0.89183 0.98660 0.92726 1.19451 0.93871 0.92349 0.97900 1.22151 0.92384 1.02059 1.02511 1.21559 0.99409 1.01390 1.01674 1.23954 0.83291 0.99004 1.03077 1.84195 1.20569 1.48060 1.50280 0.93032 0.91621 0.91007 0.91063 0.89439 0.91074 0.88846 0.89662 0.92049 0.90322 0.93138 0.77883 0.92090 0.85042 0.83143 0.83581 0.83982 0.78985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.17 59.84 0.61 1.37 16 2 N -0.62 -8.41 2.63 -185.03 -0.49 -8.89 16 3 C 0.14 1.77 5.58 -4.04 -0.02 1.75 16 4 C 0.00 0.02 3.35 -71.43 -0.24 -0.22 16 5 H 0.07 0.84 7.91 -51.93 -0.41 0.43 16 6 C -0.13 -1.64 8.00 -26.20 -0.21 -1.85 16 7 C 0.00 0.02 7.71 -7.54 -0.06 -0.04 16 8 N -0.41 -7.45 4.42 -237.93 -1.05 -8.50 16 9 C 0.01 0.24 5.30 -4.98 -0.03 0.22 16 10 C 0.45 11.50 7.85 -10.99 -0.09 11.41 16 11 O -0.56 -16.63 16.01 5.54 0.09 -16.54 16 12 N -0.57 -15.24 5.29 -10.96 -0.06 -15.30 16 13 C -0.29 -8.41 9.68 -14.93 -0.14 -8.56 16 14 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 15 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 16 N -0.91 -25.20 13.05 55.50 0.72 -24.48 16 17 Si 0.93 21.73 29.55 -169.99 -5.02 16.71 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 C 0.54 9.31 6.71 -15.00 -0.10 9.21 16 22 O -0.48 -10.09 11.46 -19.71 -0.23 -10.32 16 23 C -0.21 -3.23 9.15 -39.25 -0.36 -3.59 16 24 C 0.01 0.13 9.95 -39.23 -0.39 -0.26 16 25 C 0.01 0.26 5.34 -38.40 -0.21 0.05 16 26 C -0.17 -3.04 10.90 -38.91 -0.42 -3.47 16 27 C -0.22 -3.57 10.87 -39.90 -0.43 -4.00 16 28 C -0.02 -0.36 12.06 29.63 0.36 0.00 16 29 O -0.14 -2.46 7.80 -20.12 -0.16 -2.62 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.53 8.07 -51.92 -0.42 0.11 16 32 H 0.07 0.68 6.01 -51.93 -0.31 0.37 16 33 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 34 H 0.09 1.28 7.15 -51.93 -0.37 0.90 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.17 7.94 -51.93 -0.41 0.76 16 37 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.06 0.91 7.42 -51.93 -0.39 0.52 16 39 H 0.08 1.44 7.89 -51.93 -0.41 1.03 16 40 H 0.05 0.90 7.30 -51.93 -0.38 0.52 16 41 H 0.39 9.87 7.90 -40.82 -0.32 9.55 16 42 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.13 1.55 6.03 -52.49 -0.32 1.23 16 44 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 45 H 0.15 2.43 8.06 -52.49 -0.42 2.00 16 46 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 47 H 0.19 2.20 8.06 -52.48 -0.42 1.77 16 LS Contribution 393.43 15.07 5.93 5.93 Total: -1.00 -37.82 393.43 -8.72 -46.54 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -6.63 Total: 15.01 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -1.83 Total: 2.46 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.87 Total: -57.17 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.29 Total: -29.48 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.82 -8.72 -46.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230637445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.167 kcal (2) G-P(sol) polarization free energy of solvation -37.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds