Wall clock time and date at job start Wed Apr 1 2020 04:24:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.46505 * 119.99906 * 2 1
4 4 C 1.52996 * 109.47076 * 269.99767 * 3 2 1
5 5 H 1.09001 * 112.74627 * 75.77578 * 4 3 2
6 6 C 1.53520 * 113.47289 * 206.62117 * 4 3 2
7 7 C 1.53515 * 83.57381 * 140.79167 * 6 4 3
8 8 N 1.47476 * 113.47665 * 304.99908 * 4 3 2
9 9 C 1.46896 * 111.00033 * 106.53452 * 8 4 3
10 10 C 1.50696 * 109.47534 * 190.00084 * 9 8 4
11 11 O 1.21299 * 119.99943 * 359.97438 * 10 9 8
12 12 N 1.34775 * 120.00475 * 179.97438 * 10 9 8
13 13 C 1.37100 * 120.00413 * 179.97438 * 12 10 9
14 14 H 1.08001 * 119.99565 * 0.02562 * 13 12 10
15 15 C 1.38948 * 120.00079 * 180.02562 * 13 12 10
16 16 N 1.31411 * 119.99903 * 359.97438 * 15 13 12
17 17 Si 1.86798 * 120.00081 * 180.02562 * 15 13 12
18 18 H 1.48498 * 109.47100 * 59.99569 * 17 15 13
19 19 H 1.48495 * 109.47252 * 180.02562 * 17 15 13
20 20 H 1.48501 * 109.46886 * 300.00386 * 17 15 13
21 21 C 1.34776 * 119.99946 * 180.02562 * 2 1 3
22 22 O 1.21787 * 119.99669 * 180.02562 * 21 2 1
23 23 C 1.41549 * 120.00185 * 0.02562 * 21 2 1
24 24 C 1.35626 * 120.00232 * 186.45915 * 23 21 2
25 25 C 1.41610 * 119.99859 * 10.01272 * 24 23 21
26 26 C 1.37945 * 126.10117 * 218.53245 * 25 24 23
27 27 C 1.40318 * 106.52741 * 179.73478 * 26 25 24
28 28 C 1.35154 * 107.20240 * 0.26711 * 27 26 25
29 29 O 1.34013 * 109.03761 * 359.97438 * 28 27 26
30 30 H 1.08993 * 109.47493 * 269.99997 * 1 2 3
31 31 H 1.09008 * 109.46778 * 30.00025 * 1 2 3
32 32 H 1.09000 * 109.47230 * 149.99675 * 1 2 3
33 33 H 1.08998 * 109.47124 * 30.00028 * 3 2 1
34 34 H 1.09006 * 109.46771 * 149.99513 * 3 2 1
35 35 H 1.08998 * 114.16760 * 254.43545 * 6 4 3
36 36 H 1.08993 * 114.17374 * 27.14483 * 6 4 3
37 37 H 1.08995 * 113.47666 * 219.20534 * 7 6 4
38 38 H 1.09004 * 113.52809 * 88.74741 * 7 6 4
39 39 H 1.09004 * 109.46901 * 310.00263 * 9 8 4
40 40 H 1.09006 * 109.47291 * 69.99749 * 9 8 4
41 41 H 0.97004 * 119.99787 * 0.02562 * 12 10 9
42 42 H 0.97000 * 119.99890 * 179.97438 * 16 15 13
43 43 H 1.07998 * 119.99794 * 6.45574 * 23 21 2
44 44 H 1.07993 * 119.99901 * 190.01929 * 24 23 21
45 45 H 1.07999 * 126.74172 * 0.02562 * 26 25 24
46 46 H 1.07997 * 126.39849 * 180.25704 * 27 26 25
47 47 H 1.08007 * 125.48048 * 180.02562 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.4525 1.7104 -1.4425
5 1 1.5624 2.1176 -1.9222
6 6 3.6943 2.5993 -1.5993
7 6 3.8978 1.7907 -2.8883
8 7 3.1443 0.6925 -2.2549
9 6 2.2220 0.0666 -3.2118
10 6 2.8901 -1.1252 -3.8475
11 8 4.0234 -1.4237 -3.5346
12 7 2.2284 -1.8595 -4.7637
13 6 2.8364 -2.9435 -5.3424
14 1 3.8454 -3.2092 -5.0638
15 6 2.1544 -3.7003 -6.2873
16 7 0.9264 -3.3772 -6.6259
17 14 2.9825 -5.1776 -7.0753
18 1 3.3466 -6.1605 -6.0234
19 1 2.0503 -5.8099 -8.0430
20 1 4.2093 -4.7365 -7.7864
21 6 2.1388 -1.1672 -0.0005
22 8 3.3567 -1.1671 -0.0001
23 6 1.4311 -2.3931 -0.0016
24 6 2.1027 -3.5640 0.1300
25 6 3.4750 -3.5577 0.4793
26 6 4.4445 -4.4030 -0.0192
27 6 5.6502 -4.0350 0.5971
28 6 5.3753 -3.0085 1.4321
29 8 4.0672 -2.7259 1.3616
30 1 -0.3634 0.0000 1.0276
31 1 -0.3633 0.8901 -0.5139
32 1 -0.3634 -0.8899 -0.5139
33 1 1.6084 2.0284 0.5138
34 1 3.1499 1.1384 0.5139
35 1 3.4707 3.6533 -1.7643
36 1 4.4607 2.4330 -0.8425
37 1 4.9410 1.5442 -3.0861
38 1 3.3945 2.2194 -3.7550
39 1 1.3215 -0.2571 -2.6897
40 1 1.9547 0.7881 -3.9839
41 1 1.3222 -1.6207 -5.0141
42 1 0.4504 -3.9053 -7.2858
43 1 0.3563 -2.3959 -0.1072
44 1 1.5909 -4.5011 -0.0317
45 1 4.3042 -5.1901 -0.7453
46 1 6.6172 -4.4877 0.4348
47 1 6.0943 -2.4974 2.0554
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001230637445.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:24:02
Heat of formation + Delta-G solvation = 8.124593 kcal
Electronic energy + Delta-G solvation = -32364.913688 eV
Core-core repulsion = 28130.586122 eV
Total energy + Delta-G solvation = -4234.327566 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-43.25352 -41.60683 -40.35695 -39.49725 -36.35093 -35.89951 -34.95906 -33.70665
-33.29414 -32.07071 -30.51956 -29.17709 -27.52837 -27.28378 -25.40970 -25.32479
-23.50137 -22.54531 -21.53505 -21.07466 -20.51937 -19.90132 -19.65567 -18.66025
-17.75849 -17.60506 -17.07446 -16.94127 -16.67656 -16.64988 -16.38748 -15.85188
-15.59384 -15.41026 -15.11059 -14.78940 -14.62134 -14.12089 -13.95240 -13.83078
-13.72858 -13.70059 -13.52949 -13.41701 -13.33104 -12.97318 -12.79412 -12.64560
-12.55191 -12.44659 -12.25375 -12.15392 -11.92503 -11.53939 -11.46946 -10.98282
-10.72257 -10.51403 -10.34144 -9.98264 -9.66017 -9.24950 -8.81426 -8.45419
-5.93190 -0.29000 1.28101 1.36944 1.37839 1.48841 1.81434 2.09657
2.22237 2.28706 2.39818 2.67927 2.91945 3.20016 3.43475 3.59306
3.86698 3.87561 3.96789 4.13811 4.17443 4.20790 4.25619 4.29396
4.32678 4.36787 4.47529 4.51014 4.53155 4.59704 4.78040 4.81839
4.83790 4.88061 4.97424 4.99849 5.02735 5.13017 5.14323 5.27272
5.38935 5.40379 5.50642 5.66951 5.86929 5.96473 6.21987 6.30820
6.63220 6.64603 7.16061 7.55522 7.58791 8.18646 8.72076
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.008238 B = 0.004818 C = 0.003717
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3397.884969 B = 5810.674510 C = 7530.802933
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.071 3.929
2 N -0.616 5.616
3 C 0.139 3.861
4 C 0.009 3.991
5 H 0.098 0.902
6 C -0.111 4.111
7 C -0.010 4.010
8 N -0.450 5.450
9 C 0.031 3.969
10 C 0.445 3.555
11 O -0.611 6.611
12 N -0.577 5.577
13 C -0.328 4.328
14 H 0.068 0.932
15 C -0.009 4.009
16 N -0.919 5.919
17 Si 0.986 3.014
18 H -0.274 1.274
19 H -0.265 1.265
20 H -0.276 1.276
21 C 0.528 3.472
22 O -0.531 6.531
23 C -0.215 4.215
24 C -0.013 4.013
25 C 0.001 3.999
26 C -0.206 4.206
27 C -0.236 4.236
28 C -0.028 4.028
29 O -0.150 6.150
30 H 0.073 0.927
31 H 0.089 0.911
32 H 0.071 0.929
33 H 0.116 0.884
34 H 0.060 0.940
35 H 0.110 0.890
36 H 0.084 0.916
37 H 0.051 0.949
38 H 0.076 0.924
39 H 0.093 0.907
40 H 0.071 0.929
41 H 0.394 0.606
42 H 0.277 0.723
43 H 0.167 0.833
44 H 0.179 0.821
45 H 0.145 0.855
46 H 0.162 0.838
47 H 0.230 0.770
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.318 9.439 16.144 19.442
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 N -0.349 5.349
3 C 0.016 3.984
4 C -0.101 4.101
5 H 0.115 0.885
6 C -0.149 4.149
7 C -0.139 4.139
8 N -0.172 5.172
9 C -0.101 4.101
10 C 0.232 3.768
11 O -0.496 6.496
12 N -0.216 5.216
13 C -0.457 4.457
14 H 0.086 0.914
15 C -0.208 4.208
16 N -0.561 5.561
17 Si 0.810 3.190
18 H -0.199 1.199
19 H -0.189 1.189
20 H -0.201 1.201
21 C 0.319 3.681
22 O -0.408 6.408
23 C -0.235 4.235
24 C -0.032 4.032
25 C -0.049 4.049
26 C -0.226 4.226
27 C -0.255 4.255
28 C -0.098 4.098
29 O -0.044 6.044
30 H 0.092 0.908
31 H 0.108 0.892
32 H 0.090 0.910
33 H 0.133 0.867
34 H 0.078 0.922
35 H 0.129 0.871
36 H 0.103 0.897
37 H 0.069 0.931
38 H 0.094 0.906
39 H 0.111 0.889
40 H 0.089 0.911
41 H 0.227 0.773
42 H 0.087 0.913
43 H 0.184 0.816
44 H 0.196 0.804
45 H 0.163 0.837
46 H 0.180 0.820
47 H 0.246 0.754
Dipole moment (debyes) X Y Z Total
from point charges -3.904 8.805 16.689 19.269
hybrid contribution -0.205 -0.513 -1.732 1.818
sum -4.109 8.292 14.957 17.589
Atomic orbital electron populations
1.22057 0.77780 1.04159 1.03082 1.47684 1.07713 1.05368 1.74182
1.21430 0.97457 0.84994 0.94507 1.24011 0.97640 0.92073 0.96418
0.88453 1.23019 0.96730 0.99078 0.96031 1.23850 0.99836 0.92298
0.97946 1.68928 1.15824 1.18346 1.14109 1.22275 0.96272 0.95378
0.96193 1.20777 0.87273 0.86602 0.82120 1.90528 1.21109 1.72856
1.65069 1.41882 1.16164 1.26436 1.37085 1.19479 0.99714 1.05871
1.20685 0.91387 1.25904 0.96295 1.01437 0.97204 1.69653 1.11292
1.41565 1.33551 0.85099 0.77983 0.77813 0.78099 1.19891 1.18948
1.20131 1.17323 0.87633 0.85455 0.77722 1.90900 1.14796 1.87106
1.48034 1.22694 1.02414 0.92554 1.05853 1.21061 0.88617 1.00363
0.93183 1.19908 0.94960 0.92094 0.97905 1.22421 0.93606 1.03013
1.03539 1.21887 0.99840 1.01933 1.01806 1.24702 0.83147 0.98769
1.03137 1.84183 1.21524 1.48250 1.50438 0.90827 0.89217 0.91003
0.86651 0.92188 0.87147 0.89749 0.93067 0.90640 0.88930 0.91079
0.77298 0.91334 0.81561 0.80380 0.83683 0.82031 0.75426
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.08 10.17 127.77 1.30 2.38 16
2 N -0.62 -15.27 2.63 -857.48 -2.25 -17.52 16
3 C 0.14 3.12 5.58 86.38 0.48 3.60 16
4 C 0.01 0.21 3.35 42.19 0.14 0.35 16
5 H 0.10 1.83 7.91 -2.39 -0.02 1.81 16
6 C -0.11 -2.43 8.00 30.94 0.25 -2.18 16
7 C -0.01 -0.32 7.71 83.58 0.64 0.33 16
8 N -0.45 -16.13 4.42 -906.67 -4.01 -20.14 16
9 C 0.03 1.18 5.30 85.56 0.45 1.63 16
10 C 0.45 23.28 7.85 87.66 0.69 23.97 16
11 O -0.61 -38.16 16.01 -3.09 -0.05 -38.21 16
12 N -0.58 -31.36 5.29 -306.98 -1.62 -32.99 16
13 C -0.33 -19.58 9.68 84.04 0.81 -18.77 16
14 H 0.07 4.43 7.16 -2.91 -0.02 4.40 16
15 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16
16 N -0.92 -50.37 13.05 21.66 0.28 -50.09 16
17 Si 0.99 44.52 29.55 68.60 2.03 46.55 16
18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16
19 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16
20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16
21 C 0.53 17.98 6.71 85.06 0.57 18.55 16
22 O -0.53 -23.00 11.46 19.10 0.22 -22.78 16
23 C -0.21 -6.46 9.15 22.48 0.21 -6.25 16
24 C -0.01 -0.41 9.95 22.50 0.22 -0.18 16
25 C 0.00 0.05 5.34 23.03 0.12 0.18 16
26 C -0.21 -7.80 10.90 22.71 0.25 -7.55 16
27 C -0.24 -7.96 10.87 22.07 0.24 -7.72 16
28 C -0.03 -0.90 12.06 67.11 0.81 -0.09 16
29 O -0.15 -5.59 7.80 17.63 0.14 -5.46 16
30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16
31 H 0.09 0.98 8.07 -2.38 -0.02 0.96 16
32 H 0.07 1.11 6.01 -2.39 -0.01 1.10 16
33 H 0.12 1.57 8.07 -2.39 -0.02 1.55 16
34 H 0.06 1.70 7.15 -2.38 -0.02 1.68 16
35 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16
36 H 0.08 2.02 7.94 -2.39 -0.02 2.00 16
37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16
38 H 0.08 2.11 7.42 -2.38 -0.02 2.09 16
39 H 0.09 3.23 7.89 -2.38 -0.02 3.21 16
40 H 0.07 2.39 7.30 -2.38 -0.02 2.38 16
41 H 0.39 20.14 7.90 -92.71 -0.73 19.40 16
42 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16
43 H 0.17 3.57 6.03 -2.91 -0.02 3.55 16
44 H 0.18 4.35 8.06 -2.91 -0.02 4.32 16
45 H 0.15 5.25 8.06 -2.91 -0.02 5.22 16
46 H 0.16 4.56 8.06 -2.91 -0.02 4.53 16
47 H 0.23 5.16 8.06 -2.91 -0.02 5.14 16
Total: -1.00 -87.67 393.43 2.66 -85.01
By element:
Atomic # 1 Polarization: 47.14 SS G_CDS: 0.27 Total: 47.40 kcal
Atomic # 6 Polarization: 0.56 SS G_CDS: 7.66 Total: 8.21 kcal
Atomic # 7 Polarization: -113.13 SS G_CDS: -7.60 Total: -120.73 kcal
Atomic # 8 Polarization: -66.75 SS G_CDS: 0.31 Total: -66.45 kcal
Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal
Total: -87.67 2.66 -85.01 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001230637445.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.134 kcal
(2) G-P(sol) polarization free energy of solvation -87.667 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.467 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.010 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.125 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds