Wall clock time and date at job start Wed Apr 1 2020 04:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 119.99906 * 2 1 4 4 C 1.52996 * 109.47076 * 269.99767 * 3 2 1 5 5 H 1.09001 * 112.74627 * 75.77578 * 4 3 2 6 6 C 1.53520 * 113.47289 * 206.62117 * 4 3 2 7 7 C 1.53515 * 83.57381 * 140.79167 * 6 4 3 8 8 N 1.47476 * 113.47665 * 304.99908 * 4 3 2 9 9 C 1.46896 * 111.00033 * 106.53452 * 8 4 3 10 10 C 1.50696 * 109.47534 * 190.00084 * 9 8 4 11 11 O 1.21299 * 119.99943 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00475 * 179.97438 * 10 9 8 13 13 C 1.37100 * 120.00413 * 179.97438 * 12 10 9 14 14 H 1.08001 * 119.99565 * 0.02562 * 13 12 10 15 15 C 1.38948 * 120.00079 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99903 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00081 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47100 * 59.99569 * 17 15 13 19 19 H 1.48495 * 109.47252 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46886 * 300.00386 * 17 15 13 21 21 C 1.34776 * 119.99946 * 180.02562 * 2 1 3 22 22 O 1.21787 * 119.99669 * 180.02562 * 21 2 1 23 23 C 1.41549 * 120.00185 * 0.02562 * 21 2 1 24 24 C 1.35626 * 120.00232 * 186.45915 * 23 21 2 25 25 C 1.41610 * 119.99859 * 10.01272 * 24 23 21 26 26 C 1.37945 * 126.10117 * 218.53245 * 25 24 23 27 27 C 1.40318 * 106.52741 * 179.73478 * 26 25 24 28 28 C 1.35154 * 107.20240 * 0.26711 * 27 26 25 29 29 O 1.34013 * 109.03761 * 359.97438 * 28 27 26 30 30 H 1.08993 * 109.47493 * 269.99997 * 1 2 3 31 31 H 1.09008 * 109.46778 * 30.00025 * 1 2 3 32 32 H 1.09000 * 109.47230 * 149.99675 * 1 2 3 33 33 H 1.08998 * 109.47124 * 30.00028 * 3 2 1 34 34 H 1.09006 * 109.46771 * 149.99513 * 3 2 1 35 35 H 1.08998 * 114.16760 * 254.43545 * 6 4 3 36 36 H 1.08993 * 114.17374 * 27.14483 * 6 4 3 37 37 H 1.08995 * 113.47666 * 219.20534 * 7 6 4 38 38 H 1.09004 * 113.52809 * 88.74741 * 7 6 4 39 39 H 1.09004 * 109.46901 * 310.00263 * 9 8 4 40 40 H 1.09006 * 109.47291 * 69.99749 * 9 8 4 41 41 H 0.97004 * 119.99787 * 0.02562 * 12 10 9 42 42 H 0.97000 * 119.99890 * 179.97438 * 16 15 13 43 43 H 1.07998 * 119.99794 * 6.45574 * 23 21 2 44 44 H 1.07993 * 119.99901 * 190.01929 * 24 23 21 45 45 H 1.07999 * 126.74172 * 0.02562 * 26 25 24 46 46 H 1.07997 * 126.39849 * 180.25704 * 27 26 25 47 47 H 1.08007 * 125.48048 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 1.5624 2.1176 -1.9222 6 6 3.6943 2.5993 -1.5993 7 6 3.8978 1.7907 -2.8883 8 7 3.1443 0.6925 -2.2549 9 6 2.2220 0.0666 -3.2118 10 6 2.8901 -1.1252 -3.8475 11 8 4.0234 -1.4237 -3.5346 12 7 2.2284 -1.8595 -4.7637 13 6 2.8364 -2.9435 -5.3424 14 1 3.8454 -3.2092 -5.0638 15 6 2.1544 -3.7003 -6.2873 16 7 0.9264 -3.3772 -6.6259 17 14 2.9825 -5.1776 -7.0753 18 1 3.3466 -6.1605 -6.0234 19 1 2.0503 -5.8099 -8.0430 20 1 4.2093 -4.7365 -7.7864 21 6 2.1388 -1.1672 -0.0005 22 8 3.3567 -1.1671 -0.0001 23 6 1.4311 -2.3931 -0.0016 24 6 2.1027 -3.5640 0.1300 25 6 3.4750 -3.5577 0.4793 26 6 4.4445 -4.4030 -0.0192 27 6 5.6502 -4.0350 0.5971 28 6 5.3753 -3.0085 1.4321 29 8 4.0672 -2.7259 1.3616 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8901 -0.5139 32 1 -0.3634 -0.8899 -0.5139 33 1 1.6084 2.0284 0.5138 34 1 3.1499 1.1384 0.5139 35 1 3.4707 3.6533 -1.7643 36 1 4.4607 2.4330 -0.8425 37 1 4.9410 1.5442 -3.0861 38 1 3.3945 2.2194 -3.7550 39 1 1.3215 -0.2571 -2.6897 40 1 1.9547 0.7881 -3.9839 41 1 1.3222 -1.6207 -5.0141 42 1 0.4504 -3.9053 -7.2858 43 1 0.3563 -2.3959 -0.1072 44 1 1.5909 -4.5011 -0.0317 45 1 4.3042 -5.1901 -0.7453 46 1 6.6172 -4.4877 0.4348 47 1 6.0943 -2.4974 2.0554 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230637445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:02 Heat of formation + Delta-G solvation = 8.124593 kcal Electronic energy + Delta-G solvation = -32364.913688 eV Core-core repulsion = 28130.586122 eV Total energy + Delta-G solvation = -4234.327566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.25352 -41.60683 -40.35695 -39.49725 -36.35093 -35.89951 -34.95906 -33.70665 -33.29414 -32.07071 -30.51956 -29.17709 -27.52837 -27.28378 -25.40970 -25.32479 -23.50137 -22.54531 -21.53505 -21.07466 -20.51937 -19.90132 -19.65567 -18.66025 -17.75849 -17.60506 -17.07446 -16.94127 -16.67656 -16.64988 -16.38748 -15.85188 -15.59384 -15.41026 -15.11059 -14.78940 -14.62134 -14.12089 -13.95240 -13.83078 -13.72858 -13.70059 -13.52949 -13.41701 -13.33104 -12.97318 -12.79412 -12.64560 -12.55191 -12.44659 -12.25375 -12.15392 -11.92503 -11.53939 -11.46946 -10.98282 -10.72257 -10.51403 -10.34144 -9.98264 -9.66017 -9.24950 -8.81426 -8.45419 -5.93190 -0.29000 1.28101 1.36944 1.37839 1.48841 1.81434 2.09657 2.22237 2.28706 2.39818 2.67927 2.91945 3.20016 3.43475 3.59306 3.86698 3.87561 3.96789 4.13811 4.17443 4.20790 4.25619 4.29396 4.32678 4.36787 4.47529 4.51014 4.53155 4.59704 4.78040 4.81839 4.83790 4.88061 4.97424 4.99849 5.02735 5.13017 5.14323 5.27272 5.38935 5.40379 5.50642 5.66951 5.86929 5.96473 6.21987 6.30820 6.63220 6.64603 7.16061 7.55522 7.58791 8.18646 8.72076 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008238 B = 0.004818 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3397.884969 B = 5810.674510 C = 7530.802933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.616 5.616 3 C 0.139 3.861 4 C 0.009 3.991 5 H 0.098 0.902 6 C -0.111 4.111 7 C -0.010 4.010 8 N -0.450 5.450 9 C 0.031 3.969 10 C 0.445 3.555 11 O -0.611 6.611 12 N -0.577 5.577 13 C -0.328 4.328 14 H 0.068 0.932 15 C -0.009 4.009 16 N -0.919 5.919 17 Si 0.986 3.014 18 H -0.274 1.274 19 H -0.265 1.265 20 H -0.276 1.276 21 C 0.528 3.472 22 O -0.531 6.531 23 C -0.215 4.215 24 C -0.013 4.013 25 C 0.001 3.999 26 C -0.206 4.206 27 C -0.236 4.236 28 C -0.028 4.028 29 O -0.150 6.150 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.060 0.940 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.394 0.606 42 H 0.277 0.723 43 H 0.167 0.833 44 H 0.179 0.821 45 H 0.145 0.855 46 H 0.162 0.838 47 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.318 9.439 16.144 19.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.349 5.349 3 C 0.016 3.984 4 C -0.101 4.101 5 H 0.115 0.885 6 C -0.149 4.149 7 C -0.139 4.139 8 N -0.172 5.172 9 C -0.101 4.101 10 C 0.232 3.768 11 O -0.496 6.496 12 N -0.216 5.216 13 C -0.457 4.457 14 H 0.086 0.914 15 C -0.208 4.208 16 N -0.561 5.561 17 Si 0.810 3.190 18 H -0.199 1.199 19 H -0.189 1.189 20 H -0.201 1.201 21 C 0.319 3.681 22 O -0.408 6.408 23 C -0.235 4.235 24 C -0.032 4.032 25 C -0.049 4.049 26 C -0.226 4.226 27 C -0.255 4.255 28 C -0.098 4.098 29 O -0.044 6.044 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.133 0.867 34 H 0.078 0.922 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.227 0.773 42 H 0.087 0.913 43 H 0.184 0.816 44 H 0.196 0.804 45 H 0.163 0.837 46 H 0.180 0.820 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -3.904 8.805 16.689 19.269 hybrid contribution -0.205 -0.513 -1.732 1.818 sum -4.109 8.292 14.957 17.589 Atomic orbital electron populations 1.22057 0.77780 1.04159 1.03082 1.47684 1.07713 1.05368 1.74182 1.21430 0.97457 0.84994 0.94507 1.24011 0.97640 0.92073 0.96418 0.88453 1.23019 0.96730 0.99078 0.96031 1.23850 0.99836 0.92298 0.97946 1.68928 1.15824 1.18346 1.14109 1.22275 0.96272 0.95378 0.96193 1.20777 0.87273 0.86602 0.82120 1.90528 1.21109 1.72856 1.65069 1.41882 1.16164 1.26436 1.37085 1.19479 0.99714 1.05871 1.20685 0.91387 1.25904 0.96295 1.01437 0.97204 1.69653 1.11292 1.41565 1.33551 0.85099 0.77983 0.77813 0.78099 1.19891 1.18948 1.20131 1.17323 0.87633 0.85455 0.77722 1.90900 1.14796 1.87106 1.48034 1.22694 1.02414 0.92554 1.05853 1.21061 0.88617 1.00363 0.93183 1.19908 0.94960 0.92094 0.97905 1.22421 0.93606 1.03013 1.03539 1.21887 0.99840 1.01933 1.01806 1.24702 0.83147 0.98769 1.03137 1.84183 1.21524 1.48250 1.50438 0.90827 0.89217 0.91003 0.86651 0.92188 0.87147 0.89749 0.93067 0.90640 0.88930 0.91079 0.77298 0.91334 0.81561 0.80380 0.83683 0.82031 0.75426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 10.17 127.77 1.30 2.38 16 2 N -0.62 -15.27 2.63 -857.48 -2.25 -17.52 16 3 C 0.14 3.12 5.58 86.38 0.48 3.60 16 4 C 0.01 0.21 3.35 42.19 0.14 0.35 16 5 H 0.10 1.83 7.91 -2.39 -0.02 1.81 16 6 C -0.11 -2.43 8.00 30.94 0.25 -2.18 16 7 C -0.01 -0.32 7.71 83.58 0.64 0.33 16 8 N -0.45 -16.13 4.42 -906.67 -4.01 -20.14 16 9 C 0.03 1.18 5.30 85.56 0.45 1.63 16 10 C 0.45 23.28 7.85 87.66 0.69 23.97 16 11 O -0.61 -38.16 16.01 -3.09 -0.05 -38.21 16 12 N -0.58 -31.36 5.29 -306.98 -1.62 -32.99 16 13 C -0.33 -19.58 9.68 84.04 0.81 -18.77 16 14 H 0.07 4.43 7.16 -2.91 -0.02 4.40 16 15 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 16 N -0.92 -50.37 13.05 21.66 0.28 -50.09 16 17 Si 0.99 44.52 29.55 68.60 2.03 46.55 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 C 0.53 17.98 6.71 85.06 0.57 18.55 16 22 O -0.53 -23.00 11.46 19.10 0.22 -22.78 16 23 C -0.21 -6.46 9.15 22.48 0.21 -6.25 16 24 C -0.01 -0.41 9.95 22.50 0.22 -0.18 16 25 C 0.00 0.05 5.34 23.03 0.12 0.18 16 26 C -0.21 -7.80 10.90 22.71 0.25 -7.55 16 27 C -0.24 -7.96 10.87 22.07 0.24 -7.72 16 28 C -0.03 -0.90 12.06 67.11 0.81 -0.09 16 29 O -0.15 -5.59 7.80 17.63 0.14 -5.46 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 0.98 8.07 -2.38 -0.02 0.96 16 32 H 0.07 1.11 6.01 -2.39 -0.01 1.10 16 33 H 0.12 1.57 8.07 -2.39 -0.02 1.55 16 34 H 0.06 1.70 7.15 -2.38 -0.02 1.68 16 35 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.08 2.02 7.94 -2.39 -0.02 2.00 16 37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 2.11 7.42 -2.38 -0.02 2.09 16 39 H 0.09 3.23 7.89 -2.38 -0.02 3.21 16 40 H 0.07 2.39 7.30 -2.38 -0.02 2.38 16 41 H 0.39 20.14 7.90 -92.71 -0.73 19.40 16 42 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 43 H 0.17 3.57 6.03 -2.91 -0.02 3.55 16 44 H 0.18 4.35 8.06 -2.91 -0.02 4.32 16 45 H 0.15 5.25 8.06 -2.91 -0.02 5.22 16 46 H 0.16 4.56 8.06 -2.91 -0.02 4.53 16 47 H 0.23 5.16 8.06 -2.91 -0.02 5.14 16 Total: -1.00 -87.67 393.43 2.66 -85.01 By element: Atomic # 1 Polarization: 47.14 SS G_CDS: 0.27 Total: 47.40 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 7.66 Total: 8.21 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -7.60 Total: -120.73 kcal Atomic # 8 Polarization: -66.75 SS G_CDS: 0.31 Total: -66.45 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -87.67 2.66 -85.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230637445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.134 kcal (2) G-P(sol) polarization free energy of solvation -87.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds