Wall clock time and date at job start Wed Apr 1 2020 04:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 119.99936 * 2 1 4 4 C 1.53005 * 109.47048 * 90.00218 * 3 2 1 5 5 H 1.08996 * 112.78568 * 284.19506 * 4 3 2 6 6 C 1.53507 * 113.47626 * 153.37935 * 4 3 2 7 7 C 1.53508 * 83.57465 * 219.20983 * 6 4 3 8 8 N 1.47472 * 87.93317 * 26.02798 * 7 6 4 9 9 C 1.46907 * 111.00139 * 221.29702 * 8 7 6 10 10 C 1.50701 * 109.46796 * 294.44770 * 9 8 7 11 11 O 1.21290 * 120.00112 * 353.80544 * 10 9 8 12 12 N 1.34777 * 119.99760 * 174.08577 * 10 9 8 13 13 C 1.37096 * 120.00062 * 179.71910 * 12 10 9 14 14 H 1.08001 * 119.99769 * 0.02562 * 13 12 10 15 15 C 1.38950 * 120.00161 * 180.02562 * 13 12 10 16 16 N 1.31402 * 119.99933 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99793 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47472 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47119 * 119.99959 * 17 15 13 20 20 H 1.48510 * 109.46869 * 239.99620 * 17 15 13 21 21 C 1.34778 * 120.00357 * 180.02562 * 2 1 3 22 22 O 1.21770 * 120.00295 * 179.97438 * 21 2 1 23 23 C 1.41558 * 119.99712 * 359.97438 * 21 2 1 24 24 C 1.35625 * 120.00038 * 180.02562 * 23 21 2 25 25 C 1.41602 * 119.99877 * 179.97438 * 24 23 21 26 26 C 1.37951 * 126.10089 * 179.71311 * 25 24 23 27 27 C 1.40319 * 106.52785 * 179.85137 * 26 25 24 28 28 C 1.35156 * 107.20320 * 0.41479 * 27 26 25 29 29 O 1.34017 * 109.03528 * 359.73916 * 28 27 26 30 30 H 1.09005 * 109.47443 * 89.99988 * 1 2 3 31 31 H 1.09003 * 109.47278 * 209.99925 * 1 2 3 32 32 H 1.08996 * 109.47492 * 329.99578 * 1 2 3 33 33 H 1.09000 * 109.47116 * 330.00159 * 3 2 1 34 34 H 1.09000 * 109.47187 * 210.00030 * 3 2 1 35 35 H 1.09004 * 114.16748 * 105.56290 * 6 4 3 36 36 H 1.09000 * 114.34324 * 332.87122 * 6 4 3 37 37 H 1.09002 * 113.47805 * 271.25544 * 7 6 4 38 38 H 1.09006 * 113.47341 * 140.79236 * 7 6 4 39 39 H 1.08998 * 109.47047 * 174.44521 * 9 8 7 40 40 H 1.09003 * 109.46722 * 54.43929 * 9 8 7 41 41 H 0.97002 * 120.00053 * 359.72413 * 12 10 9 42 42 H 0.97003 * 120.00445 * 180.02562 * 16 15 13 43 43 H 1.08003 * 119.99850 * 359.97438 * 23 21 2 44 44 H 1.08006 * 119.99732 * 0.02562 * 24 23 21 45 45 H 1.08001 * 126.73804 * 0.02562 * 26 25 24 46 46 H 1.07997 * 126.39507 * 180.13243 * 27 26 25 47 47 H 1.07998 * 125.47894 * 179.75953 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 1.5630 2.1181 1.9227 6 6 3.6942 2.5992 1.5995 7 6 3.8977 1.7906 2.8884 8 7 3.1444 0.6924 2.2550 9 6 2.2219 0.0664 3.2117 10 6 3.0120 -0.6094 4.3027 11 8 4.2210 -0.6705 4.2269 12 7 2.3748 -1.1507 5.3597 13 6 3.0932 -1.7705 6.3494 14 1 4.1697 -1.8246 6.2821 15 6 2.4362 -2.3290 7.4389 16 7 1.1264 -2.2627 7.5210 17 14 3.4151 -3.1729 8.7877 18 1 4.8624 -3.1123 8.4608 19 1 3.1702 -2.4856 10.0811 20 1 2.9909 -4.5922 8.8931 21 6 2.1389 -1.1672 -0.0005 22 8 3.3566 -1.1672 -0.0010 23 6 1.4312 -2.3931 -0.0005 24 6 2.1093 -3.5677 -0.0005 25 6 1.4013 -4.7939 0.0000 26 6 1.9601 -6.0552 -0.0055 27 6 0.8920 -6.9651 0.0010 28 6 -0.2496 -6.2415 0.0006 29 8 0.0595 -4.9375 0.0001 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6083 2.0284 -0.5138 34 1 3.1499 1.1384 -0.5138 35 1 3.4705 3.6532 1.7645 36 1 4.4624 2.4354 0.8438 37 1 3.3939 2.2199 3.7545 38 1 4.9409 1.5440 3.0861 39 1 1.6095 -0.6728 2.6954 40 1 1.5785 0.8300 3.6489 41 1 1.4079 -1.1018 5.4203 42 1 0.6678 -2.6523 8.2818 43 1 0.3511 -2.3931 0.0003 44 1 3.1893 -3.5676 -0.0001 45 1 3.0131 -6.2952 -0.0106 46 1 0.9679 -8.0424 0.0011 47 1 -1.2499 -6.6487 0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230637446.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:07 Heat of formation + Delta-G solvation = 20.392568 kcal Electronic energy + Delta-G solvation = -30978.045084 eV Core-core repulsion = 26744.249497 eV Total energy + Delta-G solvation = -4233.795586 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.63630 -40.47971 -39.24882 -37.60802 -35.35880 -34.13960 -33.84377 -33.14533 -31.29629 -30.65537 -29.60801 -28.33297 -26.50877 -25.68133 -24.43242 -23.61364 -22.56800 -21.93105 -20.40704 -19.43001 -19.16502 -18.59160 -17.85987 -17.78547 -16.82107 -16.20883 -16.18150 -15.89022 -15.71377 -15.46350 -14.66578 -14.52915 -14.29702 -14.03186 -13.82413 -13.69830 -13.22461 -13.12819 -12.97969 -12.91985 -12.70594 -12.57021 -12.43249 -12.10693 -11.80955 -11.67717 -11.50501 -11.41282 -11.20289 -11.03984 -10.69089 -10.60699 -10.33558 -10.30190 -10.17278 -10.00829 -9.58359 -9.45482 -8.70839 -8.27828 -8.13583 -8.00439 -7.90212 -6.37054 -3.77178 0.45157 2.05891 2.66690 2.84026 3.13620 3.19007 3.28901 3.36994 3.67623 3.97943 4.14610 4.33064 4.57866 4.65005 4.80044 4.81583 4.94314 4.96396 5.09506 5.10856 5.15609 5.25693 5.29201 5.40251 5.42454 5.53438 5.61695 5.63021 5.63790 5.64925 5.77203 5.87916 5.92759 5.96273 5.99380 6.03541 6.18135 6.24447 6.36216 6.36878 6.46270 6.64387 6.84831 6.94670 7.42582 7.56085 7.59889 8.11780 8.47901 8.67719 9.23733 9.60155 10.12991 10.81170 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.006318 B = 0.004365 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4430.527448 B = 6412.847019 C = 9849.564109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.616 5.616 3 C 0.139 3.861 4 C 0.001 3.999 5 H 0.072 0.928 6 C -0.138 4.138 7 C 0.013 3.987 8 N -0.416 5.416 9 C 0.016 3.984 10 C 0.446 3.554 11 O -0.573 6.573 12 N -0.568 5.568 13 C -0.295 4.295 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.904 5.904 17 Si 0.928 3.072 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.550 3.450 22 O -0.509 6.509 23 C -0.207 4.207 24 C 0.008 3.992 25 C -0.004 4.004 26 C -0.165 4.165 27 C -0.217 4.217 28 C -0.024 4.024 29 O -0.166 6.166 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.390 0.610 42 H 0.270 0.730 43 H 0.129 0.871 44 H 0.161 0.839 45 H 0.156 0.844 46 H 0.152 0.848 47 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.626 1.251 -18.233 19.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.350 5.350 3 C 0.015 3.985 4 C -0.110 4.110 5 H 0.090 0.910 6 C -0.177 4.177 7 C -0.116 4.116 8 N -0.138 5.138 9 C -0.117 4.117 10 C 0.231 3.769 11 O -0.456 6.456 12 N -0.205 5.205 13 C -0.424 4.424 14 H 0.120 0.880 15 C -0.180 4.180 16 N -0.546 5.546 17 Si 0.755 3.245 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.341 3.659 22 O -0.386 6.386 23 C -0.228 4.228 24 C -0.011 4.011 25 C -0.053 4.053 26 C -0.184 4.184 27 C -0.236 4.236 28 C -0.093 4.093 29 O -0.062 6.062 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.223 0.777 42 H 0.080 0.920 43 H 0.146 0.854 44 H 0.178 0.822 45 H 0.174 0.826 46 H 0.170 0.830 47 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -6.141 0.794 -18.435 19.447 hybrid contribution -1.112 -0.149 1.517 1.887 sum -7.253 0.645 -16.918 18.419 Atomic orbital electron populations 1.21809 0.80110 1.03221 1.01434 1.47571 1.06296 1.06176 1.74937 1.21389 0.97755 0.84165 0.95164 1.23948 0.96770 0.93801 0.96495 0.91009 1.23190 0.97447 0.97647 0.99383 1.23532 1.02044 0.91027 0.95004 1.68969 1.14365 1.16859 1.13654 1.22436 0.95449 0.99310 0.94472 1.19720 0.88572 0.84718 0.83908 1.90533 1.13947 1.62394 1.78728 1.41875 1.09443 1.50253 1.18930 1.19743 0.93378 1.31041 0.98265 0.87961 1.25231 0.95758 0.98136 0.98879 1.69619 1.07139 1.46221 1.31642 0.85825 0.79870 0.78665 0.80156 1.19221 1.20799 1.20778 1.16826 0.87618 0.83948 0.77535 1.90883 1.13084 1.87245 1.47375 1.22224 1.00929 0.93084 1.06519 1.20702 0.99992 0.87913 0.92526 1.19920 0.80249 0.95557 1.09554 1.22390 1.00832 0.91070 1.04149 1.21780 0.92131 1.01051 1.08686 1.24277 1.00609 0.79943 1.04512 1.84086 1.23905 1.27669 1.70533 0.92812 0.90943 0.91265 0.90762 0.89237 0.91102 0.88863 0.92178 0.89145 0.89963 0.93548 0.77691 0.92049 0.85353 0.82190 0.82586 0.83004 0.77816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.12 59.85 0.61 1.30 16 2 N -0.62 -7.77 2.81 -185.03 -0.52 -8.29 16 3 C 0.14 1.65 5.58 -4.04 -0.02 1.63 16 4 C 0.00 0.01 3.37 -71.45 -0.24 -0.23 16 5 H 0.07 0.88 7.63 -51.93 -0.40 0.48 16 6 C -0.14 -1.75 8.00 -26.21 -0.21 -1.96 16 7 C 0.01 0.22 6.33 -7.56 -0.05 0.17 16 8 N -0.42 -7.64 4.78 -237.98 -1.14 -8.77 16 9 C 0.02 0.31 5.45 -4.97 -0.03 0.28 16 10 C 0.45 11.29 7.46 -10.98 -0.08 11.21 16 11 O -0.57 -16.57 14.98 5.55 0.08 -16.48 16 12 N -0.57 -15.14 5.29 -10.96 -0.06 -15.20 16 13 C -0.29 -8.54 9.68 -14.93 -0.14 -8.68 16 14 H 0.10 3.12 7.16 -52.49 -0.38 2.75 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 16 N -0.90 -25.25 13.05 55.50 0.72 -24.53 16 17 Si 0.93 21.68 29.55 -169.99 -5.02 16.66 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.55 8.64 6.45 -14.99 -0.10 8.54 16 22 O -0.51 -10.00 15.12 5.13 0.08 -9.92 16 23 C -0.21 -2.88 8.68 -39.25 -0.34 -3.22 16 24 C 0.01 0.12 9.39 -39.23 -0.37 -0.25 16 25 C 0.00 -0.05 6.84 -38.40 -0.26 -0.31 16 26 C -0.17 -1.95 10.90 -38.90 -0.42 -2.38 16 27 C -0.22 -2.19 10.87 -39.90 -0.43 -2.62 16 28 C -0.02 -0.23 12.06 29.64 0.36 0.12 16 29 O -0.17 -2.07 10.18 4.69 0.05 -2.02 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.65 6.08 -51.93 -0.32 0.34 16 32 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 33 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 34 H 0.09 1.22 7.16 -51.93 -0.37 0.85 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.17 7.94 -51.93 -0.41 0.76 16 37 H 0.06 1.03 7.84 -51.93 -0.41 0.62 16 38 H 0.09 1.76 7.97 -51.93 -0.41 1.35 16 39 H 0.08 1.59 7.66 -51.93 -0.40 1.19 16 40 H 0.05 0.82 7.56 -51.93 -0.39 0.43 16 41 H 0.39 9.98 7.90 -40.82 -0.32 9.66 16 42 H 0.27 7.09 8.31 -40.82 -0.34 6.76 16 43 H 0.13 1.52 5.75 -52.48 -0.30 1.22 16 44 H 0.16 2.32 7.46 -52.48 -0.39 1.93 16 45 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 46 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 47 H 0.21 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 396.77 15.07 5.98 5.98 Total: -1.00 -36.76 396.77 -8.25 -45.01 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -6.59 Total: 13.49 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -1.83 Total: 4.08 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.99 Total: -56.80 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: 0.21 Total: -28.42 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.76 -8.25 -45.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230637446.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.400 kcal (2) G-P(sol) polarization free energy of solvation -36.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds