Wall clock time and date at job start Wed Apr 1 2020 04:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 119.99936 * 2 1 4 4 C 1.53005 * 109.47048 * 90.00218 * 3 2 1 5 5 H 1.08996 * 112.78568 * 284.19506 * 4 3 2 6 6 C 1.53507 * 113.47626 * 153.37935 * 4 3 2 7 7 C 1.53508 * 83.57465 * 219.20983 * 6 4 3 8 8 N 1.47472 * 87.93317 * 26.02798 * 7 6 4 9 9 C 1.46907 * 111.00139 * 221.29702 * 8 7 6 10 10 C 1.50701 * 109.46796 * 294.44770 * 9 8 7 11 11 O 1.21290 * 120.00112 * 353.80544 * 10 9 8 12 12 N 1.34777 * 119.99760 * 174.08577 * 10 9 8 13 13 C 1.37096 * 120.00062 * 179.71910 * 12 10 9 14 14 H 1.08001 * 119.99769 * 0.02562 * 13 12 10 15 15 C 1.38950 * 120.00161 * 180.02562 * 13 12 10 16 16 N 1.31402 * 119.99933 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99793 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47472 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47119 * 119.99959 * 17 15 13 20 20 H 1.48510 * 109.46869 * 239.99620 * 17 15 13 21 21 C 1.34778 * 120.00357 * 180.02562 * 2 1 3 22 22 O 1.21770 * 120.00295 * 179.97438 * 21 2 1 23 23 C 1.41558 * 119.99712 * 359.97438 * 21 2 1 24 24 C 1.35625 * 120.00038 * 180.02562 * 23 21 2 25 25 C 1.41602 * 119.99877 * 179.97438 * 24 23 21 26 26 C 1.37951 * 126.10089 * 179.71311 * 25 24 23 27 27 C 1.40319 * 106.52785 * 179.85137 * 26 25 24 28 28 C 1.35156 * 107.20320 * 0.41479 * 27 26 25 29 29 O 1.34017 * 109.03528 * 359.73916 * 28 27 26 30 30 H 1.09005 * 109.47443 * 89.99988 * 1 2 3 31 31 H 1.09003 * 109.47278 * 209.99925 * 1 2 3 32 32 H 1.08996 * 109.47492 * 329.99578 * 1 2 3 33 33 H 1.09000 * 109.47116 * 330.00159 * 3 2 1 34 34 H 1.09000 * 109.47187 * 210.00030 * 3 2 1 35 35 H 1.09004 * 114.16748 * 105.56290 * 6 4 3 36 36 H 1.09000 * 114.34324 * 332.87122 * 6 4 3 37 37 H 1.09002 * 113.47805 * 271.25544 * 7 6 4 38 38 H 1.09006 * 113.47341 * 140.79236 * 7 6 4 39 39 H 1.08998 * 109.47047 * 174.44521 * 9 8 7 40 40 H 1.09003 * 109.46722 * 54.43929 * 9 8 7 41 41 H 0.97002 * 120.00053 * 359.72413 * 12 10 9 42 42 H 0.97003 * 120.00445 * 180.02562 * 16 15 13 43 43 H 1.08003 * 119.99850 * 359.97438 * 23 21 2 44 44 H 1.08006 * 119.99732 * 0.02562 * 24 23 21 45 45 H 1.08001 * 126.73804 * 0.02562 * 26 25 24 46 46 H 1.07997 * 126.39507 * 180.13243 * 27 26 25 47 47 H 1.07998 * 125.47894 * 179.75953 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 1.5630 2.1181 1.9227 6 6 3.6942 2.5992 1.5995 7 6 3.8977 1.7906 2.8884 8 7 3.1444 0.6924 2.2550 9 6 2.2219 0.0664 3.2117 10 6 3.0120 -0.6094 4.3027 11 8 4.2210 -0.6705 4.2269 12 7 2.3748 -1.1507 5.3597 13 6 3.0932 -1.7705 6.3494 14 1 4.1697 -1.8246 6.2821 15 6 2.4362 -2.3290 7.4389 16 7 1.1264 -2.2627 7.5210 17 14 3.4151 -3.1729 8.7877 18 1 4.8624 -3.1123 8.4608 19 1 3.1702 -2.4856 10.0811 20 1 2.9909 -4.5922 8.8931 21 6 2.1389 -1.1672 -0.0005 22 8 3.3566 -1.1672 -0.0010 23 6 1.4312 -2.3931 -0.0005 24 6 2.1093 -3.5677 -0.0005 25 6 1.4013 -4.7939 0.0000 26 6 1.9601 -6.0552 -0.0055 27 6 0.8920 -6.9651 0.0010 28 6 -0.2496 -6.2415 0.0006 29 8 0.0595 -4.9375 0.0001 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6083 2.0284 -0.5138 34 1 3.1499 1.1384 -0.5138 35 1 3.4705 3.6532 1.7645 36 1 4.4624 2.4354 0.8438 37 1 3.3939 2.2199 3.7545 38 1 4.9409 1.5440 3.0861 39 1 1.6095 -0.6728 2.6954 40 1 1.5785 0.8300 3.6489 41 1 1.4079 -1.1018 5.4203 42 1 0.6678 -2.6523 8.2818 43 1 0.3511 -2.3931 0.0003 44 1 3.1893 -3.5676 -0.0001 45 1 3.0131 -6.2952 -0.0106 46 1 0.9679 -8.0424 0.0011 47 1 -1.2499 -6.6487 0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230637446.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:05 Heat of formation + Delta-G solvation = -6.692455 kcal Electronic energy + Delta-G solvation = -30979.219578 eV Core-core repulsion = 26744.249497 eV Total energy + Delta-G solvation = -4234.970081 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.50770 -41.72232 -40.54469 -39.49879 -36.42687 -35.97589 -35.19450 -34.01015 -33.37806 -32.11735 -30.68034 -29.28483 -27.57822 -27.36935 -25.49298 -25.35984 -23.59650 -22.81194 -21.37004 -21.13938 -20.55093 -19.95876 -19.60266 -18.80480 -17.86502 -17.70395 -17.14909 -17.09154 -16.99118 -16.84435 -16.48651 -15.86153 -15.66547 -15.55104 -15.30679 -15.12682 -14.59184 -14.06552 -13.95430 -13.89812 -13.77425 -13.64778 -13.60216 -13.54909 -13.34741 -12.99996 -12.90859 -12.77633 -12.55367 -12.46752 -12.30498 -12.15989 -11.91414 -11.67596 -11.59897 -11.47153 -10.86061 -10.78022 -10.38031 -10.05959 -9.77229 -9.37629 -8.92446 -8.50883 -5.99801 -0.55746 1.18197 1.32292 1.37122 1.51968 1.72580 1.99055 1.99434 2.17640 2.26008 2.56728 2.90782 3.14922 3.28937 3.59467 3.67924 3.87018 3.94284 4.01746 4.08059 4.15599 4.20506 4.24499 4.27335 4.37860 4.38707 4.48073 4.50130 4.60341 4.64958 4.77089 4.86369 4.87272 4.96078 4.97250 5.00989 5.02937 5.09333 5.20271 5.28095 5.36098 5.46201 5.52146 5.77112 5.90789 6.06288 6.16657 6.52634 6.56181 7.08403 7.37426 7.49683 8.06839 8.67091 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.006318 B = 0.004365 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4430.527448 B = 6412.847019 C = 9849.564109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.611 5.611 3 C 0.137 3.863 4 C 0.008 3.992 5 H 0.097 0.903 6 C -0.113 4.113 7 C 0.001 3.999 8 N -0.451 5.451 9 C 0.035 3.965 10 C 0.439 3.561 11 O -0.617 6.617 12 N -0.573 5.573 13 C -0.334 4.334 14 H 0.074 0.926 15 C -0.010 4.010 16 N -0.919 5.919 17 Si 0.992 3.008 18 H -0.276 1.276 19 H -0.266 1.266 20 H -0.268 1.268 21 C 0.542 3.458 22 O -0.565 6.565 23 C -0.218 4.218 24 C 0.005 3.995 25 C -0.039 4.039 26 C -0.169 4.169 27 C -0.230 4.230 28 C -0.011 4.011 29 O -0.178 6.178 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.121 0.879 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.394 0.606 42 H 0.279 0.721 43 H 0.150 0.850 44 H 0.143 0.857 45 H 0.164 0.836 46 H 0.179 0.821 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.626 1.526 -18.621 21.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.343 5.343 3 C 0.014 3.986 4 C -0.102 4.102 5 H 0.114 0.886 6 C -0.151 4.151 7 C -0.128 4.128 8 N -0.173 5.173 9 C -0.097 4.097 10 C 0.226 3.774 11 O -0.503 6.503 12 N -0.210 5.210 13 C -0.463 4.463 14 H 0.092 0.908 15 C -0.210 4.210 16 N -0.560 5.560 17 Si 0.815 3.185 18 H -0.201 1.201 19 H -0.191 1.191 20 H -0.194 1.194 21 C 0.334 3.666 22 O -0.446 6.446 23 C -0.238 4.238 24 C -0.015 4.015 25 C -0.087 4.087 26 C -0.188 4.188 27 C -0.249 4.249 28 C -0.079 4.079 29 O -0.074 6.074 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.139 0.861 34 H 0.085 0.915 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.228 0.772 42 H 0.088 0.912 43 H 0.167 0.833 44 H 0.160 0.840 45 H 0.181 0.819 46 H 0.196 0.804 47 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -9.218 1.104 -18.835 20.999 hybrid contribution -0.229 -0.329 1.615 1.664 sum -9.446 0.775 -17.220 19.656 Atomic orbital electron populations 1.22080 0.77522 1.04214 1.03285 1.47679 1.07933 1.05466 1.73242 1.21513 0.97816 0.84891 0.94354 1.24071 0.97561 0.92044 0.96517 0.88550 1.23089 0.96844 0.99076 0.96046 1.23544 0.99758 0.92139 0.97345 1.69005 1.15615 1.18814 1.13906 1.22237 0.94968 0.99635 0.92883 1.20754 0.88520 0.83742 0.84380 1.90500 1.16226 1.63809 1.79721 1.41925 1.09484 1.50481 1.19150 1.19657 0.92576 1.33763 1.00320 0.90807 1.26022 0.96862 0.97844 1.00290 1.69669 1.08014 1.45911 1.32426 0.84893 0.77861 0.78171 0.77527 1.20127 1.19119 1.19353 1.17162 0.87125 0.85342 0.76976 1.90852 1.15303 1.88066 1.50394 1.22291 1.01775 0.92316 1.07463 1.20655 0.99474 0.89024 0.92296 1.19849 0.80959 0.95526 1.12388 1.22761 1.01983 0.91281 1.02801 1.22168 0.91557 1.02294 1.08878 1.25243 1.02421 0.78812 1.01451 1.84071 1.23279 1.29248 1.70805 0.90507 0.91221 0.89010 0.86129 0.91499 0.87347 0.89117 0.92238 0.93074 0.89611 0.91030 0.77187 0.91188 0.83260 0.83966 0.81878 0.80372 0.73530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 10.12 127.77 1.29 2.35 16 2 N -0.61 -14.55 2.81 -857.49 -2.41 -16.97 16 3 C 0.14 2.97 5.58 86.38 0.48 3.45 16 4 C 0.01 0.20 3.37 42.18 0.14 0.35 16 5 H 0.10 1.95 7.63 -2.39 -0.02 1.93 16 6 C -0.11 -2.66 8.00 30.94 0.25 -2.41 16 7 C 0.00 0.05 6.33 83.57 0.53 0.58 16 8 N -0.45 -16.71 4.78 -906.83 -4.33 -21.04 16 9 C 0.03 1.37 5.45 85.56 0.47 1.84 16 10 C 0.44 23.14 7.46 87.66 0.65 23.79 16 11 O -0.62 -37.86 14.98 -3.06 -0.05 -37.90 16 12 N -0.57 -31.56 5.29 -306.98 -1.62 -33.18 16 13 C -0.33 -20.02 9.68 84.04 0.81 -19.20 16 14 H 0.07 4.77 7.16 -2.91 -0.02 4.75 16 15 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 16 N -0.92 -50.88 13.05 21.66 0.28 -50.60 16 17 Si 0.99 44.49 29.55 68.60 2.03 46.51 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 21 C 0.54 17.47 6.45 85.06 0.55 18.02 16 22 O -0.57 -23.61 15.12 -4.57 -0.07 -23.68 16 23 C -0.22 -6.27 8.68 22.48 0.20 -6.07 16 24 C 0.01 0.17 9.39 22.49 0.21 0.38 16 25 C -0.04 -1.05 6.84 23.03 0.16 -0.89 16 26 C -0.17 -4.01 10.90 22.71 0.25 -3.77 16 27 C -0.23 -4.23 10.87 22.07 0.24 -3.99 16 28 C -0.01 -0.18 12.06 67.11 0.81 0.63 16 29 O -0.18 -4.27 10.18 -6.13 -0.06 -4.33 16 30 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.07 1.10 6.08 -2.39 -0.01 1.08 16 32 H 0.09 0.99 8.07 -2.39 -0.02 0.97 16 33 H 0.12 1.53 8.07 -2.39 -0.02 1.51 16 34 H 0.07 1.79 7.16 -2.39 -0.02 1.77 16 35 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.09 2.21 7.94 -2.39 -0.02 2.19 16 37 H 0.06 2.05 7.84 -2.39 -0.02 2.03 16 38 H 0.05 2.15 7.97 -2.38 -0.02 2.13 16 39 H 0.09 3.33 7.66 -2.39 -0.02 3.31 16 40 H 0.07 2.44 7.56 -2.39 -0.02 2.42 16 41 H 0.39 20.57 7.90 -92.71 -0.73 19.84 16 42 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 43 H 0.15 3.49 5.75 -2.91 -0.02 3.47 16 44 H 0.14 4.67 7.46 -2.91 -0.02 4.65 16 45 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 46 H 0.18 2.21 8.06 -2.91 -0.02 2.18 16 47 H 0.25 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -85.66 396.77 1.54 -84.12 By element: Atomic # 1 Polarization: 41.86 SS G_CDS: 0.27 Total: 42.13 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: 7.50 Total: 14.93 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -8.09 Total: -121.79 kcal Atomic # 8 Polarization: -65.73 SS G_CDS: -0.18 Total: -65.91 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -85.66 1.54 -84.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230637446.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.430 kcal (2) G-P(sol) polarization free energy of solvation -85.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds