Wall clock time and date at job start Wed Apr 1 2020 04:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99850 * 2 1 4 4 C 1.52996 * 109.46930 * 89.99649 * 3 2 1 5 5 H 1.08994 * 112.75174 * 284.22779 * 4 3 2 6 6 C 1.53515 * 113.47700 * 153.38034 * 4 3 2 7 7 C 1.53507 * 83.57656 * 219.21074 * 6 4 3 8 8 N 1.47482 * 113.47486 * 55.00031 * 4 3 2 9 9 C 1.46901 * 111.00264 * 253.46661 * 8 4 3 10 10 C 1.50691 * 109.47339 * 190.00107 * 9 8 4 11 11 O 1.21292 * 120.00140 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00288 * 180.02562 * 10 9 8 13 13 C 1.37093 * 120.00298 * 180.02562 * 12 10 9 14 14 H 1.07995 * 120.00096 * 359.97438 * 13 12 10 15 15 C 1.38950 * 120.00068 * 180.02562 * 13 12 10 16 16 N 1.31411 * 120.00322 * 179.97438 * 15 13 12 17 17 Si 1.86808 * 120.00043 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46953 * 89.99709 * 17 15 13 19 19 H 1.48496 * 109.47152 * 210.00066 * 17 15 13 20 20 H 1.48500 * 109.47019 * 330.00134 * 17 15 13 21 21 C 1.34772 * 119.99799 * 179.97438 * 2 1 3 22 22 O 1.21593 * 119.99825 * 185.33497 * 21 2 1 23 23 C 1.47537 * 120.00417 * 5.33250 * 21 2 1 24 24 C 1.39707 * 120.19069 * 22.29194 * 23 21 2 25 25 C 1.37784 * 119.90688 * 179.97438 * 24 23 21 26 26 C 1.38545 * 120.30300 * 0.02562 * 25 24 23 27 27 C 1.38056 * 120.39212 * 359.97438 * 26 25 24 28 28 C 1.38710 * 120.07722 * 359.74291 * 27 26 25 29 29 O 1.35661 * 120.14829 * 180.28008 * 28 27 26 30 30 H 1.09000 * 109.47061 * 84.05774 * 1 2 3 31 31 H 1.08999 * 109.47404 * 204.05085 * 1 2 3 32 32 H 1.08992 * 109.47277 * 324.05536 * 1 2 3 33 33 H 1.08991 * 109.47067 * 209.99793 * 3 2 1 34 34 H 1.09004 * 109.46794 * 329.99810 * 3 2 1 35 35 H 1.09004 * 114.16546 * 332.86020 * 6 4 3 36 36 H 1.08996 * 114.17094 * 105.55852 * 6 4 3 37 37 H 1.08996 * 113.47876 * 271.25635 * 7 6 4 38 38 H 1.09004 * 113.52974 * 140.79705 * 7 6 4 39 39 H 1.09002 * 109.46767 * 310.00252 * 9 8 4 40 40 H 1.09003 * 109.46760 * 69.99842 * 9 8 4 41 41 H 0.97005 * 119.99484 * 359.97438 * 12 10 9 42 42 H 0.96994 * 120.00035 * 180.02562 * 16 15 13 43 43 H 1.08002 * 120.04372 * 359.95480 * 24 23 21 44 44 H 1.08002 * 119.84990 * 180.02562 * 25 24 23 45 45 H 1.08002 * 119.80775 * 179.97438 * 26 25 24 46 46 H 1.07997 * 119.96180 * 180.02562 * 27 26 25 47 47 H 0.96705 * 113.99574 * 270.25419 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 1.4425 5 1 1.5624 2.1175 1.9222 6 6 3.6941 2.5994 1.5996 7 6 3.8976 1.7908 2.8885 8 7 3.1442 0.6924 2.2551 9 6 2.2218 0.0665 3.2118 10 6 3.0033 -0.7809 4.1822 11 8 4.2101 -0.8565 4.0861 12 7 2.3615 -1.4557 5.1565 13 6 3.0726 -2.2263 6.0397 14 1 4.1471 -2.2929 5.9545 15 6 2.4107 -2.9224 7.0437 16 7 3.0922 -3.6614 7.8900 17 14 0.5519 -2.8077 7.1905 18 1 -0.0759 -3.8791 6.3763 19 1 0.1567 -2.9708 8.6126 20 1 0.0975 -1.4820 6.6993 21 6 2.1389 -1.1672 0.0005 22 8 3.3508 -1.1694 0.0984 23 6 1.4060 -2.4422 -0.1176 24 6 0.1284 -2.4685 -0.6822 25 6 -0.5506 -3.6626 -0.7901 26 6 0.0277 -4.8386 -0.3408 27 6 1.2896 -4.8270 0.2191 28 6 1.9898 -3.6348 0.3304 29 8 3.2322 -3.6226 0.8751 30 1 -0.3633 0.1064 -1.0221 31 1 -0.3634 -0.9384 0.4188 32 1 -0.3633 0.8319 0.6032 33 1 3.1499 1.1384 -0.5138 34 1 1.6084 2.0283 -0.5139 35 1 4.4606 2.4330 0.8426 36 1 3.4704 3.6533 1.7644 37 1 3.3937 2.2200 3.7545 38 1 4.9405 1.5439 3.0872 39 1 1.6836 0.8415 3.7577 40 1 1.5101 -0.5598 2.6738 41 1 1.3963 -1.3955 5.2331 42 1 2.6301 -4.1476 8.5906 43 1 -0.3266 -1.5540 -1.0332 44 1 -1.5381 -3.6819 -1.2271 45 1 -0.5118 -5.7701 -0.4289 46 1 1.7339 -5.7479 0.5668 47 1 3.2402 -3.4908 1.8331 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230788420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:59 Heat of formation + Delta-G solvation = -0.135821 kcal Electronic energy + Delta-G solvation = -32287.086657 eV Core-core repulsion = 28052.400893 eV Total energy + Delta-G solvation = -4234.685764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.81021 -39.96417 -38.36386 -37.76962 -36.68292 -35.25056 -33.93613 -31.89400 -31.67239 -30.64389 -29.81994 -28.66972 -26.82526 -25.85826 -24.09503 -23.49306 -22.81175 -22.26182 -19.87824 -19.49414 -19.34614 -18.32659 -17.99696 -17.24414 -16.41355 -16.11640 -15.95249 -15.75550 -15.54975 -15.12598 -14.83306 -14.64347 -14.56425 -14.13255 -13.87358 -13.75898 -13.37303 -13.10856 -12.96649 -12.71308 -12.66596 -12.44743 -12.23227 -12.17906 -11.99957 -11.64340 -11.60128 -11.39165 -11.28260 -11.15603 -10.78543 -10.61635 -10.49981 -10.42543 -9.97309 -9.55618 -9.44820 -9.01814 -8.85455 -8.68176 -8.39388 -8.24068 -8.16376 -6.30502 -3.81669 0.82803 1.17883 2.93996 2.99766 3.03848 3.04826 3.12529 3.71948 3.76292 4.06779 4.10128 4.31448 4.50338 4.52564 4.65090 4.76486 4.84999 4.88255 4.95475 5.04548 5.12656 5.20119 5.25299 5.27433 5.31530 5.43692 5.47104 5.50657 5.58738 5.65654 5.72997 5.76951 5.80637 5.89595 5.94761 6.08644 6.14963 6.23314 6.28334 6.33982 6.52607 6.65668 6.72101 7.28074 7.47048 7.59765 7.91215 8.15499 8.47529 8.61572 8.96782 9.43397 9.85987 10.82839 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008106 B = 0.005079 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3453.270111 B = 5511.094451 C = 7596.323990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.617 5.617 3 C 0.141 3.859 4 C 0.001 3.999 5 H 0.072 0.928 6 C -0.136 4.136 7 C 0.009 3.991 8 N -0.411 5.411 9 C 0.011 3.989 10 C 0.455 3.545 11 O -0.550 6.550 12 N -0.596 5.596 13 C -0.302 4.302 14 H 0.120 0.880 15 C 0.042 3.958 16 N -0.882 5.882 17 Si 0.877 3.123 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.271 1.271 21 C 0.552 3.448 22 O -0.472 6.472 23 C -0.166 4.166 24 C -0.097 4.097 25 C -0.148 4.148 26 C -0.082 4.082 27 C -0.159 4.159 28 C 0.176 3.824 29 O -0.478 6.478 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.080 0.920 41 H 0.368 0.632 42 H 0.273 0.727 43 H 0.149 0.851 44 H 0.127 0.873 45 H 0.127 0.873 46 H 0.134 0.866 47 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.400 7.809 -18.048 23.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.353 5.353 3 C 0.017 3.983 4 C -0.111 4.111 5 H 0.090 0.910 6 C -0.175 4.175 7 C -0.120 4.120 8 N -0.134 5.134 9 C -0.121 4.121 10 C 0.240 3.760 11 O -0.430 6.430 12 N -0.236 5.236 13 C -0.431 4.431 14 H 0.137 0.863 15 C -0.161 4.161 16 N -0.522 5.522 17 Si 0.703 3.297 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.197 1.197 21 C 0.339 3.661 22 O -0.343 6.343 23 C -0.170 4.170 24 C -0.115 4.115 25 C -0.166 4.166 26 C -0.100 4.100 27 C -0.178 4.178 28 C 0.129 3.871 29 O -0.290 6.290 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.110 0.890 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.200 0.800 42 H 0.083 0.917 43 H 0.166 0.834 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.152 0.848 47 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -11.332 6.913 -18.724 22.952 hybrid contribution -2.510 0.549 1.457 2.953 sum -13.842 7.462 -17.267 23.354 Atomic orbital electron populations 1.22411 0.80835 1.03735 1.00970 1.47559 1.06030 1.05936 1.75771 1.21388 0.97694 0.84024 0.95149 1.23926 0.96817 0.93782 0.96532 0.91047 1.23173 0.97416 0.97627 0.99258 1.23608 1.02130 0.91114 0.95171 1.68993 1.14162 1.16806 1.13396 1.22476 0.95878 0.98786 0.94964 1.19596 0.88589 0.84403 0.83416 1.90593 1.13787 1.65372 1.73286 1.42239 1.08035 1.44545 1.28822 1.19417 0.95176 1.21806 1.06670 0.86279 1.25009 0.98150 0.96792 0.96152 1.69617 1.35670 1.29755 1.17201 0.86721 0.85788 0.78423 0.78739 1.19676 1.20175 1.19708 1.18025 0.87440 0.82791 0.77848 1.90920 1.12758 1.86100 1.44538 1.20486 0.95767 0.94033 1.06702 1.22064 0.92981 0.99436 0.97051 1.21073 1.00691 0.92400 1.02448 1.21202 0.94487 0.98497 0.95810 1.21534 0.95150 0.98287 1.02782 1.18596 0.84199 0.90697 0.93599 1.84734 1.22164 1.94481 1.27616 0.92412 0.89469 0.91717 0.89276 0.90641 0.88731 0.90992 0.92145 0.89034 0.93375 0.90158 0.80006 0.91675 0.83393 0.85531 0.85471 0.84768 0.73643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 8.68 59.85 0.52 1.01 16 2 N -0.62 -7.30 2.74 -182.82 -0.50 -7.80 16 3 C 0.14 1.55 5.58 -4.04 -0.02 1.53 16 4 C 0.00 0.01 3.37 -71.43 -0.24 -0.23 16 5 H 0.07 0.77 7.77 -51.93 -0.40 0.37 16 6 C -0.14 -1.59 8.00 -26.20 -0.21 -1.80 16 7 C 0.01 0.14 6.71 -7.54 -0.05 0.09 16 8 N -0.41 -7.00 4.43 -237.94 -1.05 -8.05 16 9 C 0.01 0.20 5.31 -4.98 -0.03 0.18 16 10 C 0.45 10.59 7.62 -10.99 -0.08 10.51 16 11 O -0.55 -15.18 15.34 5.55 0.09 -15.09 16 12 N -0.60 -14.30 5.09 -10.97 -0.06 -14.36 16 13 C -0.30 -8.54 10.16 -14.94 -0.15 -8.69 16 14 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 15 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 16 N -0.88 -25.83 13.96 55.50 0.77 -25.05 16 17 Si 0.88 19.39 27.74 -169.99 -4.71 14.67 16 18 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 21 C 0.55 8.67 6.64 -12.47 -0.08 8.59 16 22 O -0.47 -9.56 14.25 -15.31 -0.22 -9.77 16 23 C -0.17 -2.36 5.56 -104.85 -0.58 -2.94 16 24 C -0.10 -1.00 7.55 -39.20 -0.30 -1.30 16 25 C -0.15 -1.36 10.02 -39.63 -0.40 -1.76 16 26 C -0.08 -0.83 10.03 -39.53 -0.40 -1.22 16 27 C -0.16 -2.02 9.98 -39.47 -0.39 -2.42 16 28 C 0.18 2.73 6.69 -38.69 -0.26 2.47 16 29 O -0.48 -8.68 11.82 -39.28 -0.46 -9.15 16 30 H 0.06 0.32 7.18 -51.93 -0.37 -0.05 16 31 H 0.09 0.71 4.98 -51.93 -0.26 0.45 16 32 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 33 H 0.09 1.16 7.23 -51.93 -0.38 0.79 16 34 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 35 H 0.09 1.12 7.94 -51.93 -0.41 0.71 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.92 7.70 -51.93 -0.40 0.52 16 38 H 0.09 1.67 8.13 -51.93 -0.42 1.25 16 39 H 0.05 0.76 7.56 -51.93 -0.39 0.37 16 40 H 0.08 1.35 7.68 -51.93 -0.40 0.95 16 41 H 0.37 7.84 5.76 -40.82 -0.24 7.60 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.15 1.12 4.22 -52.49 -0.22 0.90 16 44 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 45 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 46 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 47 H 0.40 7.07 9.06 45.56 0.41 7.48 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -37.10 382.91 -8.72 -45.82 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -5.57 Total: 17.95 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -2.77 Total: 5.07 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.83 Total: -55.26 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -0.60 Total: -34.01 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.10 -8.72 -45.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230788420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.680 kcal (2) G-P(sol) polarization free energy of solvation -37.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds