Wall clock time and date at job start Wed Apr 1 2020 04:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46499 * 119.99850 * 2 1 4 4 C 1.52996 * 109.46930 * 89.99649 * 3 2 1 5 5 H 1.08994 * 112.75174 * 284.22779 * 4 3 2 6 6 C 1.53515 * 113.47700 * 153.38034 * 4 3 2 7 7 C 1.53507 * 83.57656 * 219.21074 * 6 4 3 8 8 N 1.47482 * 113.47486 * 55.00031 * 4 3 2 9 9 C 1.46901 * 111.00264 * 253.46661 * 8 4 3 10 10 C 1.50691 * 109.47339 * 190.00107 * 9 8 4 11 11 O 1.21292 * 120.00140 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00288 * 180.02562 * 10 9 8 13 13 C 1.37093 * 120.00298 * 180.02562 * 12 10 9 14 14 H 1.07995 * 120.00096 * 359.97438 * 13 12 10 15 15 C 1.38950 * 120.00068 * 180.02562 * 13 12 10 16 16 N 1.31411 * 120.00322 * 179.97438 * 15 13 12 17 17 Si 1.86808 * 120.00043 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46953 * 89.99709 * 17 15 13 19 19 H 1.48496 * 109.47152 * 210.00066 * 17 15 13 20 20 H 1.48500 * 109.47019 * 330.00134 * 17 15 13 21 21 C 1.34772 * 119.99799 * 179.97438 * 2 1 3 22 22 O 1.21593 * 119.99825 * 185.33497 * 21 2 1 23 23 C 1.47537 * 120.00417 * 5.33250 * 21 2 1 24 24 C 1.39707 * 120.19069 * 22.29194 * 23 21 2 25 25 C 1.37784 * 119.90688 * 179.97438 * 24 23 21 26 26 C 1.38545 * 120.30300 * 0.02562 * 25 24 23 27 27 C 1.38056 * 120.39212 * 359.97438 * 26 25 24 28 28 C 1.38710 * 120.07722 * 359.74291 * 27 26 25 29 29 O 1.35661 * 120.14829 * 180.28008 * 28 27 26 30 30 H 1.09000 * 109.47061 * 84.05774 * 1 2 3 31 31 H 1.08999 * 109.47404 * 204.05085 * 1 2 3 32 32 H 1.08992 * 109.47277 * 324.05536 * 1 2 3 33 33 H 1.08991 * 109.47067 * 209.99793 * 3 2 1 34 34 H 1.09004 * 109.46794 * 329.99810 * 3 2 1 35 35 H 1.09004 * 114.16546 * 332.86020 * 6 4 3 36 36 H 1.08996 * 114.17094 * 105.55852 * 6 4 3 37 37 H 1.08996 * 113.47876 * 271.25635 * 7 6 4 38 38 H 1.09004 * 113.52974 * 140.79705 * 7 6 4 39 39 H 1.09002 * 109.46767 * 310.00252 * 9 8 4 40 40 H 1.09003 * 109.46760 * 69.99842 * 9 8 4 41 41 H 0.97005 * 119.99484 * 359.97438 * 12 10 9 42 42 H 0.96994 * 120.00035 * 180.02562 * 16 15 13 43 43 H 1.08002 * 120.04372 * 359.95480 * 24 23 21 44 44 H 1.08002 * 119.84990 * 180.02562 * 25 24 23 45 45 H 1.08002 * 119.80775 * 179.97438 * 26 25 24 46 46 H 1.07997 * 119.96180 * 180.02562 * 27 26 25 47 47 H 0.96705 * 113.99574 * 270.25419 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 1.4425 5 1 1.5624 2.1175 1.9222 6 6 3.6941 2.5994 1.5996 7 6 3.8976 1.7908 2.8885 8 7 3.1442 0.6924 2.2551 9 6 2.2218 0.0665 3.2118 10 6 3.0033 -0.7809 4.1822 11 8 4.2101 -0.8565 4.0861 12 7 2.3615 -1.4557 5.1565 13 6 3.0726 -2.2263 6.0397 14 1 4.1471 -2.2929 5.9545 15 6 2.4107 -2.9224 7.0437 16 7 3.0922 -3.6614 7.8900 17 14 0.5519 -2.8077 7.1905 18 1 -0.0759 -3.8791 6.3763 19 1 0.1567 -2.9708 8.6126 20 1 0.0975 -1.4820 6.6993 21 6 2.1389 -1.1672 0.0005 22 8 3.3508 -1.1694 0.0984 23 6 1.4060 -2.4422 -0.1176 24 6 0.1284 -2.4685 -0.6822 25 6 -0.5506 -3.6626 -0.7901 26 6 0.0277 -4.8386 -0.3408 27 6 1.2896 -4.8270 0.2191 28 6 1.9898 -3.6348 0.3304 29 8 3.2322 -3.6226 0.8751 30 1 -0.3633 0.1064 -1.0221 31 1 -0.3634 -0.9384 0.4188 32 1 -0.3633 0.8319 0.6032 33 1 3.1499 1.1384 -0.5138 34 1 1.6084 2.0283 -0.5139 35 1 4.4606 2.4330 0.8426 36 1 3.4704 3.6533 1.7644 37 1 3.3937 2.2200 3.7545 38 1 4.9405 1.5439 3.0872 39 1 1.6836 0.8415 3.7577 40 1 1.5101 -0.5598 2.6738 41 1 1.3963 -1.3955 5.2331 42 1 2.6301 -4.1476 8.5906 43 1 -0.3266 -1.5540 -1.0332 44 1 -1.5381 -3.6819 -1.2271 45 1 -0.5118 -5.7701 -0.4289 46 1 1.7339 -5.7479 0.5668 47 1 3.2402 -3.4908 1.8331 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230788420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:58 Heat of formation + Delta-G solvation = -30.546222 kcal Electronic energy + Delta-G solvation = -32288.405351 eV Core-core repulsion = 28052.400893 eV Total energy + Delta-G solvation = -4236.004458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.87339 -41.11963 -39.84277 -39.19610 -37.78350 -36.30189 -36.00064 -33.80771 -32.82029 -31.95509 -30.76375 -29.58023 -27.69963 -27.56617 -25.17798 -25.10052 -23.70670 -23.22227 -21.34093 -20.89099 -20.50527 -20.29345 -19.08977 -18.17543 -17.80560 -17.33331 -17.14343 -16.99153 -16.72964 -16.59109 -16.16917 -15.86226 -15.64135 -15.30961 -15.26961 -14.90697 -14.87612 -14.48035 -14.25239 -14.02127 -13.89388 -13.70155 -13.50176 -13.17013 -13.04377 -12.88199 -12.82264 -12.56636 -12.45952 -12.34393 -12.16782 -12.02896 -11.91813 -11.58554 -11.54446 -11.46675 -10.56596 -10.46699 -10.27932 -9.91378 -9.78115 -9.62429 -9.29316 -8.43871 -6.04974 -0.10342 0.28422 1.24367 1.30730 1.39772 1.91113 1.98143 2.13400 2.19113 2.69222 2.75652 3.10318 3.22770 3.27617 3.56876 3.64936 3.83375 3.88250 4.06949 4.12718 4.20940 4.23801 4.27463 4.28978 4.37425 4.43469 4.46964 4.51341 4.58210 4.71335 4.73211 4.84962 4.91552 4.95987 4.99098 5.01969 5.25923 5.27902 5.35815 5.44990 5.45386 5.51310 5.76508 5.84050 5.89962 6.15871 6.52495 6.57034 6.65453 6.85471 7.35335 7.44001 7.93941 8.74123 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008106 B = 0.005079 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3453.270111 B = 5511.094451 C = 7596.323990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.610 5.610 3 C 0.138 3.862 4 C 0.010 3.990 5 H 0.104 0.896 6 C -0.114 4.114 7 C -0.004 4.004 8 N -0.452 5.452 9 C 0.030 3.970 10 C 0.452 3.548 11 O -0.604 6.604 12 N -0.591 5.591 13 C -0.326 4.326 14 H 0.051 0.949 15 C -0.014 4.014 16 N -0.934 5.934 17 Si 0.963 3.037 18 H -0.256 1.256 19 H -0.272 1.272 20 H -0.233 1.233 21 C 0.544 3.456 22 O -0.539 6.539 23 C -0.187 4.187 24 C -0.086 4.086 25 C -0.133 4.133 26 C -0.076 4.076 27 C -0.175 4.175 28 C 0.126 3.874 29 O -0.505 6.505 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.125 0.875 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.387 0.613 42 H 0.279 0.721 43 H 0.184 0.816 44 H 0.173 0.827 45 H 0.160 0.840 46 H 0.131 0.869 47 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.360 10.124 -20.273 30.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.343 5.343 3 C 0.016 3.984 4 C -0.100 4.100 5 H 0.122 0.878 6 C -0.152 4.152 7 C -0.133 4.133 8 N -0.175 5.175 9 C -0.102 4.102 10 C 0.239 3.761 11 O -0.487 6.487 12 N -0.234 5.234 13 C -0.455 4.455 14 H 0.069 0.931 15 C -0.212 4.212 16 N -0.575 5.575 17 Si 0.783 3.217 18 H -0.180 1.180 19 H -0.197 1.197 20 H -0.157 1.157 21 C 0.332 3.668 22 O -0.415 6.415 23 C -0.191 4.191 24 C -0.103 4.103 25 C -0.151 4.151 26 C -0.094 4.094 27 C -0.193 4.193 28 C 0.080 3.920 29 O -0.316 6.316 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.143 0.857 35 H 0.102 0.898 36 H 0.129 0.871 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.222 0.778 42 H 0.089 0.911 43 H 0.201 0.799 44 H 0.190 0.810 45 H 0.178 0.822 46 H 0.149 0.851 47 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -18.357 9.269 -20.989 29.384 hybrid contribution -0.280 -0.205 2.087 2.115 sum -18.637 9.064 -18.903 28.050 Atomic orbital electron populations 1.22754 0.77757 1.04805 1.03634 1.47631 1.07920 1.04861 1.73910 1.21518 0.97544 0.84821 0.94551 1.24047 0.97655 0.91843 0.96442 0.87805 1.23066 0.96929 0.99205 0.95980 1.23649 0.99725 0.92246 0.97683 1.69021 1.15684 1.18801 1.13953 1.22322 0.95209 0.98689 0.93977 1.20808 0.88431 0.83599 0.83245 1.90573 1.16788 1.66895 1.74489 1.42022 1.08648 1.44274 1.28433 1.18942 0.92890 1.24517 1.09134 0.93102 1.26098 1.05420 0.95156 0.94556 1.69808 1.38989 1.30647 1.18047 0.85396 0.76417 0.80693 0.79211 1.17988 1.19705 1.15663 1.18419 0.86916 0.84353 0.77079 1.90890 1.15582 1.87136 1.47930 1.20584 0.97510 0.92819 1.08190 1.22480 0.90987 1.01557 0.95298 1.21628 1.02017 0.91124 1.00300 1.21638 0.93031 1.00649 0.94052 1.21660 0.96552 0.97229 1.03867 1.19110 0.84125 0.92796 0.95922 1.84736 1.25091 1.94837 1.26925 0.89050 0.89664 0.89153 0.92283 0.85677 0.89759 0.87132 0.91303 0.93583 0.90067 0.88781 0.77812 0.91122 0.79930 0.80990 0.82239 0.85135 0.75084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.50 8.68 127.77 1.11 1.61 16 2 N -0.61 -12.66 2.74 -850.57 -2.33 -14.99 16 3 C 0.14 2.64 5.58 86.38 0.48 3.13 16 4 C 0.01 0.22 3.37 42.19 0.14 0.36 16 5 H 0.10 1.61 7.77 -2.39 -0.02 1.59 16 6 C -0.11 -2.44 8.00 30.94 0.25 -2.20 16 7 C 0.00 -0.12 6.71 83.57 0.56 0.44 16 8 N -0.45 -15.43 4.43 -906.71 -4.01 -19.44 16 9 C 0.03 1.04 5.31 85.55 0.45 1.49 16 10 C 0.45 22.04 7.62 87.65 0.67 22.71 16 11 O -0.60 -36.46 15.34 -3.07 -0.05 -36.50 16 12 N -0.59 -29.14 5.09 -307.00 -1.56 -30.71 16 13 C -0.33 -19.66 10.16 84.04 0.85 -18.80 16 14 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 15 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 16 N -0.93 -57.33 13.96 21.66 0.30 -57.02 16 17 Si 0.96 39.18 27.74 68.60 1.90 41.09 16 18 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 19 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 20 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16 21 C 0.54 17.19 6.64 86.70 0.58 17.76 16 22 O -0.54 -23.47 14.25 15.68 0.22 -23.25 16 23 C -0.19 -5.25 5.56 -20.01 -0.11 -5.36 16 24 C -0.09 -1.43 7.55 22.52 0.17 -1.26 16 25 C -0.13 -1.78 10.02 22.24 0.22 -1.55 16 26 C -0.08 -1.30 10.03 22.30 0.22 -1.07 16 27 C -0.17 -4.52 9.98 22.34 0.22 -4.30 16 28 C 0.13 4.17 6.69 22.84 0.15 4.32 16 29 O -0.50 -20.89 11.82 -70.08 -0.83 -21.72 16 30 H 0.09 0.36 7.18 -2.39 -0.02 0.34 16 31 H 0.09 0.92 4.98 -2.39 -0.01 0.91 16 32 H 0.09 0.51 8.11 -2.39 -0.02 0.50 16 33 H 0.06 1.52 7.23 -2.39 -0.02 1.50 16 34 H 0.13 1.18 8.07 -2.39 -0.02 1.17 16 35 H 0.08 1.99 7.94 -2.38 -0.02 1.97 16 36 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 2.04 7.70 -2.39 -0.02 2.03 16 38 H 0.05 1.85 8.13 -2.39 -0.02 1.83 16 39 H 0.08 2.27 7.56 -2.39 -0.02 2.25 16 40 H 0.09 2.99 7.68 -2.39 -0.02 2.98 16 41 H 0.39 15.85 5.76 -92.70 -0.53 15.31 16 42 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 43 H 0.18 1.67 4.22 -2.91 -0.01 1.66 16 44 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 45 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 46 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 47 H 0.39 16.31 9.06 -74.05 -0.67 15.64 16 Total: -1.00 -96.62 382.91 -0.14 -96.77 By element: Atomic # 1 Polarization: 49.05 SS G_CDS: -0.23 Total: 48.81 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 6.44 Total: 16.97 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -7.60 Total: -122.16 kcal Atomic # 8 Polarization: -80.82 SS G_CDS: -0.65 Total: -81.47 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 1.90 Total: 41.09 kcal Total: -96.62 -0.14 -96.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230788420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.221 kcal (2) G-P(sol) polarization free energy of solvation -96.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds