Wall clock time and date at job start Wed Apr 1 2020 05:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35655 * 116.99882 * 2 1 4 4 C 1.38702 * 120.14922 * 359.72466 * 3 2 1 5 5 C 1.38061 * 120.08272 * 179.76448 * 4 3 2 6 6 C 1.38549 * 120.38768 * 0.51239 * 5 4 3 7 7 C 1.37783 * 120.30414 * 359.74647 * 6 5 4 8 8 C 1.39709 * 119.90466 * 359.97438 * 7 6 5 9 9 C 1.47535 * 120.18930 * 179.97438 * 8 7 6 10 10 O 1.21595 * 119.99758 * 180.02562 * 9 8 7 11 11 N 1.34771 * 119.99883 * 0.02562 * 9 8 7 12 12 C 1.46506 * 120.00006 * 179.97438 * 11 9 8 13 13 H 1.09004 * 112.84558 * 336.19898 * 12 11 9 14 14 C 1.53781 * 113.61498 * 107.50061 * 12 11 9 15 15 C 1.53774 * 87.08172 * 89.11760 * 14 12 11 16 16 H 1.09005 * 113.61819 * 270.88391 * 15 14 12 17 17 N 1.46898 * 113.69309 * 139.99404 * 15 14 12 18 18 C 1.46896 * 111.00101 * 107.46369 * 17 15 14 19 19 C 1.50709 * 109.47090 * 180.02562 * 18 17 15 20 20 O 1.21293 * 119.99459 * 359.97438 * 19 18 17 21 21 N 1.34772 * 119.99793 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99463 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00604 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99728 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99830 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99928 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47118 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47153 * 120.00625 * 26 24 22 29 29 H 1.48505 * 109.46767 * 240.00186 * 26 24 22 30 30 C 1.53774 * 113.61612 * 204.99698 * 12 11 9 31 31 H 1.09006 * 109.46808 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47352 * 299.99703 * 1 2 3 33 33 H 1.08999 * 109.47144 * 59.99727 * 1 2 3 34 34 H 1.08002 * 119.96248 * 0.02562 * 4 3 2 35 35 H 1.08002 * 119.80593 * 180.27427 * 5 4 3 36 36 H 1.07997 * 119.84757 * 179.76068 * 6 5 4 37 37 H 1.07997 * 120.04846 * 180.02562 * 7 6 5 38 38 H 0.97000 * 120.00397 * 359.97438 * 11 9 8 39 39 H 1.09002 * 113.61565 * 203.66853 * 14 12 11 40 40 H 1.09005 * 113.61157 * 334.57179 * 14 12 11 41 41 H 1.00902 * 111.00073 * 343.51176 * 17 15 14 42 42 H 1.08995 * 109.47511 * 300.00059 * 18 17 15 43 43 H 1.09006 * 109.47077 * 60.00446 * 18 17 15 44 44 H 0.96991 * 120.00374 * 359.97438 * 21 19 18 45 45 H 0.96998 * 119.99953 * 179.97438 * 25 24 22 46 46 H 1.08998 * 113.61408 * 25.43969 * 30 12 11 47 47 H 1.09004 * 113.61237 * 156.33226 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3739 -0.0058 5 6 1.9206 3.6033 -0.0008 6 6 3.3038 3.6837 -0.0008 7 6 4.0668 2.5364 -0.0005 8 6 3.4441 1.2857 0.0004 9 6 4.2551 0.0532 0.0003 10 8 3.7095 -1.0334 0.0006 11 7 5.6005 0.1319 -0.0002 12 6 6.4058 -1.0920 0.0001 13 1 5.8708 -1.9505 0.4062 14 6 7.0979 -1.3745 -1.3437 15 6 8.2767 -0.5352 -0.8235 16 1 8.1891 0.5277 -1.0489 17 7 9.5930 -1.0858 -1.1730 18 6 10.2431 -0.2764 -2.2123 19 6 11.5875 -0.8710 -2.5444 20 8 11.9669 -1.8703 -1.9712 21 7 12.3686 -0.2916 -3.4775 22 6 13.5918 -0.8322 -3.7791 23 1 13.9298 -1.7221 -3.2688 24 6 14.3970 -0.2353 -4.7415 25 7 13.9860 0.8477 -5.3622 26 14 16.0634 -0.9722 -5.1531 27 1 16.2891 -2.1813 -4.3210 28 1 16.0978 -1.3470 -6.5897 29 1 17.1278 0.0256 -4.8763 30 6 7.8114 -0.9044 0.5949 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 0.2138 2.3195 -0.0098 35 1 1.3303 4.5078 -0.0009 36 1 3.7860 4.6500 -0.0009 37 1 5.1447 2.6038 0.0000 38 1 6.0357 0.9987 -0.0009 39 1 7.3437 -2.4254 -1.4959 40 1 6.5890 -0.9296 -2.1989 41 1 9.5169 -2.0500 -1.4604 42 1 9.6203 -0.2652 -3.1067 43 1 10.3758 0.7428 -1.8492 44 1 12.0653 0.5077 -3.9355 45 1 14.5482 1.2647 -6.0337 46 1 7.8785 -0.0802 1.3050 47 1 8.2522 -1.8269 0.9729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265504757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:49 Heat of formation + Delta-G solvation = -51.793421 kcal Electronic energy + Delta-G solvation = -28972.341730 eV Core-core repulsion = 24735.415924 eV Total energy + Delta-G solvation = -4236.925806 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.00232 -39.96661 -38.53518 -37.92702 -37.62319 -34.54534 -33.82175 -32.72532 -31.35901 -31.12969 -30.56853 -27.73347 -26.85434 -25.74032 -24.84592 -24.06272 -22.88666 -22.34855 -21.09449 -19.71165 -19.17254 -18.72746 -17.86875 -17.55726 -16.72357 -16.23413 -16.17653 -15.88305 -15.46346 -15.27754 -15.12673 -14.98877 -14.69555 -14.49391 -14.17880 -14.00144 -13.82800 -13.58475 -13.18855 -12.90506 -12.74049 -12.65178 -12.49499 -12.13994 -12.08874 -11.77252 -11.62404 -11.57894 -11.55999 -11.40072 -11.07057 -10.78194 -10.42331 -10.33501 -10.21005 -9.98896 -9.55215 -9.51343 -9.17413 -8.67070 -8.43486 -8.00300 -7.93828 -6.41255 -3.81918 0.44135 0.93335 2.62394 2.84203 2.90366 3.16973 3.27500 3.35019 3.46957 3.91868 4.11597 4.23122 4.26545 4.33798 4.47219 4.51936 4.62266 4.63677 4.74229 4.81065 4.83695 4.88224 4.98993 5.03349 5.11594 5.18710 5.28049 5.30231 5.52410 5.65490 5.69817 5.75856 5.80058 5.81188 5.83013 5.91279 5.95582 6.00924 6.05386 6.19977 6.27592 6.46614 6.93557 7.27625 7.33443 7.56133 7.68369 8.07476 8.09188 8.62038 9.18748 9.55219 10.06678 10.76605 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020880 B = 0.001639 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.702035 B =17076.955481 C =17834.681961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.281 6.281 3 C 0.185 3.815 4 C -0.222 4.222 5 C -0.053 4.053 6 C -0.167 4.167 7 C -0.047 4.047 8 C -0.173 4.173 9 C 0.562 3.438 10 O -0.518 6.518 11 N -0.711 5.711 12 C 0.121 3.879 13 H 0.104 0.896 14 C -0.181 4.181 15 C 0.068 3.932 16 H 0.093 0.907 17 N -0.657 5.657 18 C 0.050 3.950 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.104 0.896 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 C -0.132 4.132 31 H 0.103 0.897 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.398 0.602 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.353 0.647 42 H 0.043 0.957 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.072 0.928 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.428 7.987 10.634 31.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.191 6.191 3 C 0.136 3.864 4 C -0.241 4.241 5 C -0.071 4.071 6 C -0.185 4.185 7 C -0.065 4.065 8 C -0.177 4.177 9 C 0.349 3.651 10 O -0.394 6.394 11 N -0.363 5.363 12 C 0.016 3.984 13 H 0.122 0.878 14 C -0.221 4.221 15 C -0.044 4.044 16 H 0.111 0.889 17 N -0.288 5.288 18 C -0.083 4.083 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 C -0.171 4.171 31 H 0.121 0.879 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.233 0.767 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.173 0.827 42 H 0.061 0.939 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -28.036 6.708 11.381 30.993 hybrid contribution 0.104 0.752 -1.462 1.647 sum -27.932 7.460 9.920 30.566 Atomic orbital electron populations 1.23180 0.78636 1.04457 1.01176 1.86385 1.20833 1.25383 1.86515 1.19067 0.90987 0.84962 0.91357 1.21271 1.00422 0.92074 1.10292 1.21156 0.94795 0.97127 0.94037 1.21024 0.93845 0.98634 1.05002 1.21206 1.00004 0.90816 0.94514 1.19362 0.90863 0.94069 1.13403 1.17970 0.81875 0.88672 0.76556 1.90827 1.71518 1.28669 1.48404 1.45589 1.05637 1.09271 1.75799 1.21743 0.91314 0.88022 0.97359 0.87774 1.24200 0.98413 1.01690 0.97814 1.23098 0.87006 0.98377 0.95878 0.88929 1.60026 1.18760 1.06525 1.43463 1.21716 0.94913 0.98110 0.93545 1.19847 0.86852 0.87069 0.83650 1.90525 1.74739 1.27260 1.54204 1.41872 1.16735 1.26855 1.34652 1.19766 0.92771 1.10888 1.19399 0.87853 1.25266 1.00119 0.96118 0.96500 1.69620 1.38522 1.19771 1.26461 0.85798 0.81303 0.79026 0.78203 1.19204 1.20792 1.20748 1.23469 0.93067 1.03442 0.97141 0.87863 0.92566 0.92554 0.84776 0.85237 0.85055 0.84879 0.76659 0.88784 0.91240 0.82677 0.93853 0.89686 0.77483 0.91948 0.90893 0.88023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.12 16 2 O -0.28 -3.11 8.57 -40.54 -0.35 -3.46 16 3 C 0.18 1.86 6.70 -38.70 -0.26 1.60 16 4 C -0.22 -1.57 9.03 -39.47 -0.36 -1.93 16 5 C -0.05 -0.31 10.03 -39.53 -0.40 -0.71 16 6 C -0.17 -1.01 10.02 -39.63 -0.40 -1.41 16 7 C -0.05 -0.34 9.54 -39.20 -0.37 -0.71 16 8 C -0.17 -1.77 5.89 -104.84 -0.62 -2.38 16 9 C 0.56 6.89 7.76 -12.47 -0.10 6.79 16 10 O -0.52 -8.29 14.76 -16.60 -0.24 -8.53 16 11 N -0.71 -6.96 5.21 -54.06 -0.28 -7.24 16 12 C 0.12 1.29 4.32 -67.12 -0.29 1.00 16 13 H 0.10 1.25 7.46 -51.93 -0.39 0.86 16 14 C -0.18 -2.02 7.50 -25.92 -0.19 -2.22 16 15 C 0.07 0.79 4.05 -66.91 -0.27 0.52 16 16 H 0.09 0.98 7.87 -51.93 -0.41 0.57 16 17 N -0.66 -10.38 6.24 -107.13 -0.67 -11.05 16 18 C 0.05 0.87 6.01 -4.97 -0.03 0.84 16 19 C 0.44 10.42 7.82 -10.98 -0.09 10.34 16 20 O -0.58 -15.93 15.78 5.55 0.09 -15.84 16 21 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 22 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 23 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 26 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 30 C -0.13 -1.37 7.63 -25.92 -0.20 -1.57 16 31 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.25 7.67 -51.93 -0.40 -0.15 16 33 H 0.06 0.26 7.65 -51.93 -0.40 -0.14 16 34 H 0.13 0.64 6.30 -52.49 -0.33 0.31 16 35 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 36 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.13 0.65 6.40 -52.49 -0.34 0.31 16 38 H 0.40 2.88 6.73 -40.82 -0.27 2.60 16 39 H 0.09 1.06 7.83 -51.93 -0.41 0.66 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.35 5.83 7.90 -39.29 -0.31 5.52 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 1.36 8.13 -51.93 -0.42 0.93 16 44 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 395.20 15.07 5.96 5.96 Total: -1.00 -35.75 395.20 -9.14 -44.88 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -6.46 Total: 14.24 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -2.82 Total: 3.23 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.28 Total: -56.58 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.50 Total: -27.83 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.75 -9.14 -44.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265504757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.911 kcal (2) G-P(sol) polarization free energy of solvation -35.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds