Wall clock time and date at job start Wed Apr 1 2020 05:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35655 * 116.99882 * 2 1 4 4 C 1.38702 * 120.14922 * 359.72466 * 3 2 1 5 5 C 1.38061 * 120.08272 * 179.76448 * 4 3 2 6 6 C 1.38549 * 120.38768 * 0.51239 * 5 4 3 7 7 C 1.37783 * 120.30414 * 359.74647 * 6 5 4 8 8 C 1.39709 * 119.90466 * 359.97438 * 7 6 5 9 9 C 1.47535 * 120.18930 * 179.97438 * 8 7 6 10 10 O 1.21595 * 119.99758 * 180.02562 * 9 8 7 11 11 N 1.34771 * 119.99883 * 0.02562 * 9 8 7 12 12 C 1.46506 * 120.00006 * 179.97438 * 11 9 8 13 13 H 1.09004 * 112.84558 * 336.19898 * 12 11 9 14 14 C 1.53781 * 113.61498 * 107.50061 * 12 11 9 15 15 C 1.53774 * 87.08172 * 89.11760 * 14 12 11 16 16 H 1.09005 * 113.61819 * 270.88391 * 15 14 12 17 17 N 1.46898 * 113.69309 * 139.99404 * 15 14 12 18 18 C 1.46896 * 111.00101 * 107.46369 * 17 15 14 19 19 C 1.50709 * 109.47090 * 180.02562 * 18 17 15 20 20 O 1.21293 * 119.99459 * 359.97438 * 19 18 17 21 21 N 1.34772 * 119.99793 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99463 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00604 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99728 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99830 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99928 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47118 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.47153 * 120.00625 * 26 24 22 29 29 H 1.48505 * 109.46767 * 240.00186 * 26 24 22 30 30 C 1.53774 * 113.61612 * 204.99698 * 12 11 9 31 31 H 1.09006 * 109.46808 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47352 * 299.99703 * 1 2 3 33 33 H 1.08999 * 109.47144 * 59.99727 * 1 2 3 34 34 H 1.08002 * 119.96248 * 0.02562 * 4 3 2 35 35 H 1.08002 * 119.80593 * 180.27427 * 5 4 3 36 36 H 1.07997 * 119.84757 * 179.76068 * 6 5 4 37 37 H 1.07997 * 120.04846 * 180.02562 * 7 6 5 38 38 H 0.97000 * 120.00397 * 359.97438 * 11 9 8 39 39 H 1.09002 * 113.61565 * 203.66853 * 14 12 11 40 40 H 1.09005 * 113.61157 * 334.57179 * 14 12 11 41 41 H 1.00902 * 111.00073 * 343.51176 * 17 15 14 42 42 H 1.08995 * 109.47511 * 300.00059 * 18 17 15 43 43 H 1.09006 * 109.47077 * 60.00446 * 18 17 15 44 44 H 0.96991 * 120.00374 * 359.97438 * 21 19 18 45 45 H 0.96998 * 119.99953 * 179.97438 * 25 24 22 46 46 H 1.08998 * 113.61408 * 25.43969 * 30 12 11 47 47 H 1.09004 * 113.61237 * 156.33226 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3739 -0.0058 5 6 1.9206 3.6033 -0.0008 6 6 3.3038 3.6837 -0.0008 7 6 4.0668 2.5364 -0.0005 8 6 3.4441 1.2857 0.0004 9 6 4.2551 0.0532 0.0003 10 8 3.7095 -1.0334 0.0006 11 7 5.6005 0.1319 -0.0002 12 6 6.4058 -1.0920 0.0001 13 1 5.8708 -1.9505 0.4062 14 6 7.0979 -1.3745 -1.3437 15 6 8.2767 -0.5352 -0.8235 16 1 8.1891 0.5277 -1.0489 17 7 9.5930 -1.0858 -1.1730 18 6 10.2431 -0.2764 -2.2123 19 6 11.5875 -0.8710 -2.5444 20 8 11.9669 -1.8703 -1.9712 21 7 12.3686 -0.2916 -3.4775 22 6 13.5918 -0.8322 -3.7791 23 1 13.9298 -1.7221 -3.2688 24 6 14.3970 -0.2353 -4.7415 25 7 13.9860 0.8477 -5.3622 26 14 16.0634 -0.9722 -5.1531 27 1 16.2891 -2.1813 -4.3210 28 1 16.0978 -1.3470 -6.5897 29 1 17.1278 0.0256 -4.8763 30 6 7.8114 -0.9044 0.5949 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 0.2138 2.3195 -0.0098 35 1 1.3303 4.5078 -0.0009 36 1 3.7860 4.6500 -0.0009 37 1 5.1447 2.6038 0.0000 38 1 6.0357 0.9987 -0.0009 39 1 7.3437 -2.4254 -1.4959 40 1 6.5890 -0.9296 -2.1989 41 1 9.5169 -2.0500 -1.4604 42 1 9.6203 -0.2652 -3.1067 43 1 10.3758 0.7428 -1.8492 44 1 12.0653 0.5077 -3.9355 45 1 14.5482 1.2647 -6.0337 46 1 7.8785 -0.0802 1.3050 47 1 8.2522 -1.8269 0.9729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265504757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:48 Heat of formation + Delta-G solvation = -78.091985 kcal Electronic energy + Delta-G solvation = -28973.482121 eV Core-core repulsion = 24735.415924 eV Total energy + Delta-G solvation = -4238.066197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.72187 -40.80639 -40.05637 -39.13915 -38.24936 -36.11901 -35.39630 -33.76741 -33.21229 -31.96595 -31.08819 -28.51062 -28.13019 -26.64151 -26.25769 -25.15127 -23.83789 -22.95327 -21.87671 -21.15575 -20.46566 -19.89432 -19.38791 -18.25187 -17.79046 -17.37961 -16.90290 -16.80618 -16.69762 -16.35353 -16.08181 -16.02351 -15.86871 -15.63130 -15.46471 -15.39196 -14.67042 -14.44620 -14.33960 -14.22690 -13.63346 -13.52126 -13.45881 -13.36058 -13.10483 -13.09278 -12.83404 -12.62600 -12.54065 -12.39601 -12.12500 -12.11002 -12.04969 -11.75410 -11.51039 -11.35777 -10.89515 -10.32442 -10.19999 -10.00835 -9.96432 -9.25664 -9.21471 -8.46516 -5.95063 -0.14313 0.41186 1.37028 1.42413 1.56616 1.87836 2.06124 2.09281 2.29836 2.34222 2.84938 2.95854 3.20896 3.44806 3.60948 3.65594 3.75256 3.81209 3.97139 3.99996 4.07379 4.22964 4.33491 4.35347 4.35504 4.41203 4.52228 4.52467 4.58121 4.62117 4.69770 4.80983 4.81367 4.89254 4.97469 5.03772 5.12630 5.17679 5.32748 5.41760 5.47655 5.56376 5.76172 5.94255 6.17170 6.37553 6.40840 6.57673 6.60940 7.13344 7.25588 7.57126 8.12626 8.71076 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.020880 B = 0.001639 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.702035 B =17076.955481 C =17834.681961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.319 6.319 3 C 0.159 3.841 4 C -0.225 4.225 5 C -0.047 4.047 6 C -0.167 4.167 7 C -0.046 4.046 8 C -0.204 4.204 9 C 0.557 3.443 10 O -0.568 6.568 11 N -0.697 5.697 12 C 0.126 3.874 13 H 0.087 0.913 14 C -0.177 4.177 15 C 0.070 3.930 16 H 0.114 0.886 17 N -0.670 5.670 18 C 0.065 3.935 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.993 3.007 27 H -0.274 1.274 28 H -0.271 1.271 29 H -0.270 1.270 30 C -0.121 4.121 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.154 0.846 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.412 0.588 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.345 0.655 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.090 0.910 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.056 10.777 10.619 32.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.231 6.231 3 C 0.111 3.889 4 C -0.243 4.243 5 C -0.065 4.065 6 C -0.185 4.185 7 C -0.065 4.065 8 C -0.208 4.208 9 C 0.346 3.654 10 O -0.448 6.448 11 N -0.350 5.350 12 C 0.020 3.980 13 H 0.105 0.895 14 C -0.217 4.217 15 C -0.040 4.040 16 H 0.132 0.868 17 N -0.301 5.301 18 C -0.068 4.068 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.211 5.211 22 C -0.464 4.464 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.199 1.199 28 H -0.196 1.196 29 H -0.195 1.195 30 C -0.160 4.160 31 H 0.125 0.875 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.172 0.828 35 H 0.179 0.821 36 H 0.177 0.823 37 H 0.172 0.828 38 H 0.251 0.749 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.165 0.835 42 H 0.083 0.917 43 H 0.126 0.874 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -28.672 9.560 11.365 32.290 hybrid contribution 0.211 -0.071 -1.427 1.444 sum -28.461 9.489 9.938 31.604 Atomic orbital electron populations 1.23401 0.76768 1.05304 1.02602 1.86327 1.23074 1.26728 1.86940 1.19438 0.91410 0.85569 0.92454 1.21546 1.01418 0.91591 1.09775 1.21611 0.95218 0.97702 0.92006 1.21424 0.94094 0.99291 1.03663 1.21477 1.01258 0.90034 0.93713 1.19438 0.91119 0.94142 1.16073 1.18430 0.82445 0.88922 0.75566 1.90790 1.72471 1.30564 1.50950 1.45454 1.05004 1.09646 1.74878 1.21587 0.91309 0.88074 0.97042 0.89500 1.24149 0.98225 1.01436 0.97923 1.23239 0.84948 0.99290 0.96543 0.86838 1.60062 1.21044 1.06152 1.42815 1.21597 0.91414 0.98636 0.95112 1.20964 0.88469 0.86178 0.82009 1.90494 1.76178 1.29126 1.55313 1.41936 1.16500 1.27199 1.35425 1.19710 0.94681 1.11180 1.20811 0.90398 1.26033 1.03173 0.96321 0.95735 1.69673 1.39711 1.20206 1.26499 0.84873 0.77188 0.78147 0.78134 1.19880 1.19636 1.19529 1.23380 0.92113 1.03769 0.96767 0.87468 0.90987 0.91141 0.82811 0.82106 0.82301 0.82789 0.74931 0.89280 0.91470 0.83489 0.91744 0.87375 0.76928 0.91298 0.89189 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.28 16 2 O -0.32 -7.41 8.57 -68.78 -0.59 -8.00 16 3 C 0.16 3.19 6.70 22.84 0.15 3.35 16 4 C -0.22 -2.80 9.03 22.34 0.20 -2.60 16 5 C -0.05 -0.41 10.03 22.30 0.22 -0.18 16 6 C -0.17 -1.48 10.02 22.24 0.22 -1.25 16 7 C -0.05 -0.58 9.54 22.52 0.21 -0.36 16 8 C -0.20 -4.10 5.89 -20.01 -0.12 -4.22 16 9 C 0.56 13.96 7.76 86.70 0.67 14.63 16 10 O -0.57 -19.26 14.76 16.90 0.25 -19.01 16 11 N -0.70 -13.14 5.21 -443.20 -2.31 -15.45 16 12 C 0.13 2.65 4.32 45.51 0.20 2.85 16 13 H 0.09 2.18 7.46 -2.38 -0.02 2.16 16 14 C -0.18 -3.86 7.50 31.12 0.23 -3.63 16 15 C 0.07 1.51 4.05 45.44 0.18 1.70 16 16 H 0.11 2.02 7.87 -2.38 -0.02 2.00 16 17 N -0.67 -20.42 6.24 -492.86 -3.08 -23.50 16 18 C 0.06 2.15 6.01 85.56 0.51 2.67 16 19 C 0.44 20.72 7.82 87.66 0.69 21.41 16 20 O -0.62 -34.84 15.78 -3.07 -0.05 -34.89 16 21 N -0.57 -29.40 5.29 -306.98 -1.62 -31.02 16 22 C -0.33 -19.08 9.68 84.04 0.81 -18.27 16 23 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 24 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 25 N -0.92 -49.50 13.05 21.66 0.28 -49.22 16 26 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 27 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 29 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 30 C -0.12 -2.36 7.63 31.12 0.24 -2.12 16 31 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.07 0.59 7.67 -2.39 -0.02 0.57 16 33 H 0.07 0.60 7.65 -2.39 -0.02 0.59 16 34 H 0.15 1.15 6.30 -2.91 -0.02 1.13 16 35 H 0.16 0.34 8.06 -2.91 -0.02 0.31 16 36 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 37 H 0.15 1.06 6.40 -2.91 -0.02 1.04 16 38 H 0.41 5.13 6.73 -92.71 -0.62 4.50 16 39 H 0.09 2.04 7.83 -2.39 -0.02 2.02 16 40 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.35 11.38 7.90 -89.69 -0.71 10.67 16 42 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.11 3.14 8.13 -2.38 -0.02 3.12 16 44 H 0.40 19.19 7.90 -92.72 -0.73 18.46 16 45 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 46 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -80.38 395.20 -0.10 -80.48 By element: Atomic # 1 Polarization: 41.54 SS G_CDS: -1.03 Total: 40.52 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 6.02 Total: 15.01 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -6.73 Total: -119.18 kcal Atomic # 8 Polarization: -61.51 SS G_CDS: -0.39 Total: -61.90 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -80.38 -0.10 -80.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265504757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.387 kcal (2) G-P(sol) polarization free energy of solvation -80.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds