Wall clock time and date at job start Wed Apr 1 2020 05:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35779 * 116.99584 * 2 1 4 4 N 1.32124 * 119.72895 * 0.02562 * 3 2 1 5 5 C 1.32019 * 121.72180 * 179.97438 * 4 3 2 6 6 C 1.38053 * 120.97657 * 0.02562 * 5 4 3 7 7 C 1.38754 * 119.34911 * 359.97438 * 6 5 4 8 8 C 1.38962 * 118.41909 * 359.74717 * 7 6 5 9 9 N 1.39970 * 120.50923 * 180.23959 * 8 7 6 10 10 C 1.47595 * 110.99634 * 36.38565 * 9 8 7 11 11 C 1.52890 * 87.78548 * 221.76139 * 10 9 8 12 12 C 1.47592 * 111.00188 * 300.27908 * 9 8 7 13 13 C 1.52456 * 114.25898 * 271.58301 * 11 10 9 14 14 N 1.46291 * 109.56959 * 272.34610 * 13 11 10 15 15 C 1.46494 * 118.73057 * 164.06805 * 14 13 11 16 16 C 1.52998 * 109.47246 * 90.00185 * 15 14 13 17 17 C 1.50700 * 109.47595 * 179.97438 * 16 15 14 18 18 H 1.08002 * 119.99813 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00253 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00186 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00089 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.46949 * 89.99795 * 21 19 17 23 23 H 1.48495 * 109.47163 * 210.00052 * 21 19 17 24 24 H 1.48506 * 109.47133 * 330.00264 * 21 19 17 25 25 C 1.33721 * 122.54111 * 344.05034 * 14 13 11 26 26 O 1.21282 * 118.35514 * 183.29597 * 25 14 13 27 27 C 1.50154 * 123.27968 * 3.32111 * 25 14 13 28 28 O 1.42560 * 114.25750 * 139.69803 * 11 10 9 29 29 H 1.09002 * 109.47382 * 59.99623 * 1 2 3 30 30 H 1.09001 * 109.46938 * 299.99609 * 1 2 3 31 31 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.51214 * 179.97438 * 5 4 3 33 33 H 1.08003 * 120.32515 * 179.97438 * 6 5 4 34 34 H 1.08004 * 120.79133 * 179.97438 * 7 6 5 35 35 H 1.08997 * 113.50280 * 336.49387 * 10 9 8 36 36 H 1.09009 * 113.49615 * 107.03124 * 10 9 8 37 37 H 1.08998 * 113.50231 * 252.96490 * 12 9 8 38 38 H 1.09001 * 113.50294 * 23.44620 * 12 9 8 39 39 H 1.08999 * 109.45762 * 32.38261 * 13 11 10 40 40 H 1.09000 * 109.45077 * 152.34210 * 13 11 10 41 41 H 1.09000 * 109.47632 * 210.00567 * 15 14 13 42 42 H 1.09004 * 109.47160 * 330.00508 * 15 14 13 43 43 H 1.09000 * 109.47117 * 300.00697 * 16 15 14 44 44 H 1.09004 * 109.46777 * 60.00088 * 16 15 14 45 45 H 0.96995 * 120.00327 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.34567 * 102.50462 * 27 25 14 47 47 H 1.08998 * 109.34708 * 222.19488 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 7 1.3205 2.3145 0.0005 5 6 1.8785 3.5109 0.0010 6 6 3.2515 3.6546 0.0005 7 6 4.0537 2.5225 0.0000 8 6 3.4390 1.2763 0.0054 9 7 4.2061 0.1055 0.0101 10 6 5.4240 0.2746 0.8266 11 6 6.1880 -0.4759 -0.2645 12 6 5.0768 0.0388 -1.1797 13 6 6.2047 -1.9903 -0.0890 14 7 7.3356 -2.3731 0.7563 15 6 7.3514 -3.7137 1.3467 16 6 8.0532 -4.6828 0.3931 17 6 8.0700 -6.0618 1.0007 18 1 7.6243 -6.2303 1.9699 19 6 8.6543 -7.1083 0.3193 20 7 8.6686 -8.3118 0.8493 21 14 9.4259 -6.8167 -1.3568 22 1 10.8561 -6.4546 -1.1871 23 1 9.3218 -8.0538 -2.1716 24 1 8.7133 -5.7098 -2.0440 25 6 8.3558 -1.5468 1.0105 26 8 9.2833 -1.9632 1.6717 27 6 8.4100 -0.1291 0.5187 28 8 7.4780 0.0594 -0.5501 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.2515 4.3904 0.0010 33 1 3.6968 4.6386 0.0006 34 1 5.1304 2.6078 -0.0008 35 1 5.7326 1.3141 0.9368 36 1 5.3876 -0.2584 1.7768 37 1 4.7484 -0.6925 -1.9182 38 1 5.2899 1.0140 -1.6176 39 1 5.2751 -2.3116 0.3808 40 1 6.3026 -2.4676 -1.0640 41 1 7.8866 -3.6866 2.2959 42 1 6.3279 -4.0482 1.5161 43 1 7.5180 -4.7100 -0.5561 44 1 9.0767 -4.3483 0.2236 45 1 9.0793 -9.0481 0.3698 46 1 8.1623 0.5467 1.3373 47 1 9.4158 0.0907 0.1608 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274765165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:55 Heat of formation + Delta-G solvation = -7.981094 kcal Electronic energy + Delta-G solvation = -31009.444758 eV Core-core repulsion = 26774.418797 eV Total energy + Delta-G solvation = -4235.025961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.21738 -40.72445 -39.42453 -38.10668 -37.02290 -35.55840 -33.13118 -32.71205 -31.54152 -30.52070 -28.99828 -27.63303 -27.37749 -26.54034 -25.84147 -24.62482 -23.40808 -22.74124 -21.27232 -20.10387 -19.00880 -18.37439 -18.04335 -17.34066 -17.21361 -16.79498 -16.40495 -16.12285 -15.87699 -15.50992 -15.23381 -14.88193 -14.68400 -14.34960 -14.25866 -14.05504 -13.88605 -13.63873 -13.52673 -13.25497 -13.00917 -12.85540 -12.63301 -12.60839 -12.29624 -12.07692 -11.64514 -11.54205 -11.52279 -11.13860 -10.91410 -10.54280 -10.28830 -10.24171 -10.15959 -10.01629 -9.81813 -9.50555 -9.35866 -9.11682 -8.73635 -8.51932 -8.27893 -6.03127 -4.01554 0.54997 0.81623 2.74228 2.76147 2.92906 3.20193 3.31683 3.34347 3.40667 3.44654 3.47060 3.90697 4.00318 4.14217 4.33105 4.39498 4.47558 4.60379 4.65978 4.73729 4.82947 4.92277 5.01172 5.02979 5.03960 5.16368 5.22107 5.31327 5.31903 5.34573 5.37640 5.46925 5.54688 5.58667 5.66066 5.71017 5.88032 5.98772 6.34318 6.49278 6.53008 6.64509 6.71896 6.98000 7.25435 7.35748 7.42466 7.71743 7.79968 8.36060 8.52061 9.00081 9.59058 11.10046 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015375 B = 0.002655 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.644569 B =10543.430500 C =11636.323471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.284 6.284 3 C 0.350 3.650 4 N -0.536 5.536 5 C 0.138 3.862 6 C -0.201 4.201 7 C -0.074 4.074 8 C -0.013 4.013 9 N -0.407 5.407 10 C -0.026 4.026 11 C 0.071 3.929 12 C 0.027 3.973 13 C 0.118 3.882 14 N -0.599 5.599 15 C 0.123 3.877 16 C -0.022 4.022 17 C -0.518 4.518 18 H 0.074 0.926 19 C 0.069 3.931 20 N -0.902 5.902 21 Si 0.881 3.119 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.267 1.267 25 C 0.478 3.522 26 O -0.537 6.537 27 C 0.052 3.948 28 O -0.354 6.354 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.161 0.839 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.015 0.985 44 H 0.017 0.983 45 H 0.263 0.737 46 H 0.085 0.915 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.042 27.968 -4.118 32.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.189 6.189 3 C 0.169 3.831 4 N -0.260 5.260 5 C -0.017 4.017 6 C -0.222 4.222 7 C -0.101 4.101 8 C -0.111 4.111 9 N -0.128 5.128 10 C -0.153 4.153 11 C 0.030 3.970 12 C -0.100 4.100 13 C -0.006 4.006 14 N -0.332 5.332 15 C 0.002 3.998 16 C -0.060 4.060 17 C -0.557 4.557 18 H 0.092 0.908 19 C -0.132 4.132 20 N -0.541 5.541 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.192 1.192 25 C 0.264 3.736 26 O -0.414 6.414 27 C -0.027 4.027 28 O -0.272 6.272 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.179 0.821 33 H 0.157 0.843 34 H 0.163 0.837 35 H 0.106 0.894 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.034 0.966 44 H 0.036 0.964 45 H 0.073 0.927 46 H 0.103 0.897 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.768 26.750 -3.831 31.287 hybrid contribution 1.494 0.875 -0.848 1.927 sum -14.274 27.625 -4.679 31.445 Atomic orbital electron populations 1.22919 0.77482 1.03279 1.02158 1.86444 1.22348 1.23441 1.86698 1.19658 0.87790 0.85009 0.90638 1.67419 1.40396 0.98726 1.19478 1.22466 0.92958 0.93699 0.92617 1.21903 0.94699 0.99590 1.06028 1.21948 1.01256 0.91721 0.95139 1.19304 0.91594 0.91091 1.09136 1.66848 1.11182 1.28880 1.05883 1.24748 0.89567 1.01374 0.99651 1.22804 0.83579 0.93680 0.96956 1.24043 0.88751 1.02767 0.94448 1.21622 0.90947 0.91240 0.96789 1.47748 1.20452 1.16061 1.48905 1.21754 1.01408 0.78424 0.98179 1.19836 0.95915 0.95006 0.95224 1.20957 1.38041 0.90792 1.05891 0.90833 1.24969 0.95461 0.94991 0.97794 1.69904 1.45197 1.00316 1.38644 0.86764 0.80225 0.77577 0.84614 1.20260 1.21374 1.19166 1.20649 0.82826 0.88451 0.81651 1.90778 1.34755 1.75840 1.40058 1.22793 0.95468 0.93143 0.91289 1.88063 1.19873 1.78937 1.40330 0.92430 0.92397 0.88334 0.82136 0.84275 0.83711 0.89407 0.88160 0.87471 0.89358 0.88152 0.90046 0.90058 0.90904 0.96650 0.96445 0.92693 0.89681 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.38 101.05 1.05 1.34 16 2 O -0.28 -3.20 10.23 -19.05 -0.19 -3.39 16 3 C 0.35 3.78 7.51 -16.95 -0.13 3.65 16 4 N -0.54 -5.16 9.22 -13.16 -0.12 -5.28 16 5 C 0.14 0.95 11.17 -17.54 -0.20 0.76 16 6 C -0.20 -1.23 10.10 -39.46 -0.40 -1.62 16 7 C -0.07 -0.55 8.03 -39.12 -0.31 -0.86 16 8 C -0.01 -0.13 5.25 -83.40 -0.44 -0.57 16 9 N -0.41 -4.19 6.05 -180.30 -1.09 -5.28 16 10 C -0.03 -0.25 6.34 -7.27 -0.05 -0.29 16 11 C 0.07 0.77 1.29 -91.02 -0.12 0.65 16 12 C 0.03 0.25 7.00 -7.28 -0.05 0.20 16 13 C 0.12 1.58 5.85 -4.43 -0.03 1.55 16 14 N -0.60 -10.23 2.84 -174.73 -0.50 -10.73 16 15 C 0.12 2.53 5.20 -4.05 -0.02 2.51 16 16 C -0.02 -0.54 4.36 -27.88 -0.12 -0.66 16 17 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 18 H 0.07 2.26 7.99 -52.49 -0.42 1.85 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.90 -28.25 13.96 55.43 0.77 -27.47 16 21 Si 0.88 22.53 27.47 -169.99 -4.67 17.86 16 22 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 25 C 0.48 8.21 7.57 -11.72 -0.09 8.12 16 26 O -0.54 -11.54 16.33 5.56 0.09 -11.45 16 27 C 0.05 0.63 6.70 35.74 0.24 0.87 16 28 O -0.35 -4.14 10.68 -35.23 -0.38 -4.52 16 29 H 0.06 0.43 8.11 -51.93 -0.42 0.01 16 30 H 0.06 0.44 8.11 -51.93 -0.42 0.02 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.16 0.61 8.06 -52.48 -0.42 0.19 16 33 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 34 H 0.15 0.86 6.20 -52.48 -0.33 0.53 16 35 H 0.09 0.69 5.58 -51.93 -0.29 0.40 16 36 H 0.10 1.05 8.11 -51.92 -0.42 0.63 16 37 H 0.11 0.96 8.11 -51.93 -0.42 0.54 16 38 H 0.09 0.72 7.08 -51.93 -0.37 0.35 16 39 H 0.10 1.28 7.83 -51.93 -0.41 0.87 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.08 1.81 7.29 -51.93 -0.38 1.43 16 42 H 0.07 1.38 7.97 -51.93 -0.41 0.97 16 43 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 44 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 45 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 46 H 0.09 0.81 7.99 -51.93 -0.41 0.40 16 47 H 0.13 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 383.39 15.07 5.78 5.78 Total: -1.00 -36.31 383.39 -8.14 -44.45 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -6.75 Total: -2.15 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -1.09 Total: 2.20 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.93 Total: -48.77 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.48 Total: -19.36 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.67 Total: 17.86 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.31 -8.14 -44.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274765165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.464 kcal (2) G-P(sol) polarization free energy of solvation -36.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds