Wall clock time and date at job start Wed Apr 1 2020 04:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34769 * 119.99704 * 2 1 4 4 O 1.21595 * 119.99454 * 185.51435 * 3 2 1 5 5 C 1.47534 * 120.00549 * 5.51520 * 3 2 1 6 6 C 1.39706 * 120.18913 * 47.72648 * 5 3 2 7 7 C 1.37786 * 119.90614 * 180.02562 * 6 5 3 8 8 C 1.38547 * 120.30401 * 359.97401 * 7 6 5 9 9 C 1.38053 * 120.38579 * 0.02562 * 8 7 6 10 10 C 1.38705 * 120.08833 * 0.02562 * 9 8 7 11 11 O 1.35657 * 120.15245 * 180.02562 * 10 9 8 12 12 C 1.46494 * 119.99932 * 179.97438 * 2 1 3 13 13 C 1.53792 * 113.61387 * 31.92732 * 12 2 1 14 14 C 1.54047 * 86.98346 * 270.83648 * 13 12 2 15 15 N 1.46899 * 113.69354 * 220.00997 * 14 13 12 16 16 C 1.46898 * 111.00108 * 252.53251 * 15 14 13 17 17 C 1.50706 * 109.47215 * 180.02562 * 16 15 14 18 18 O 1.21285 * 120.00098 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99891 * 180.02562 * 17 16 15 20 20 C 1.37091 * 119.99799 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00395 * 359.97438 * 20 19 17 22 22 C 1.38954 * 120.00044 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99567 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00149 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47145 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47058 * 119.99951 * 24 22 20 27 27 H 1.48496 * 109.47315 * 239.99945 * 24 22 20 28 28 C 1.53782 * 87.08058 * 334.56565 * 14 13 12 29 29 H 1.09000 * 109.46996 * 28.49238 * 1 2 3 30 30 H 1.08997 * 109.47321 * 148.49230 * 1 2 3 31 31 H 1.09005 * 109.47124 * 268.48982 * 1 2 3 32 32 H 1.08001 * 120.05048 * 359.97438 * 6 5 3 33 33 H 1.08007 * 119.85262 * 179.97438 * 7 6 5 34 34 H 1.07997 * 119.80573 * 179.74466 * 8 7 6 35 35 H 1.08002 * 119.95499 * 179.97438 * 9 8 7 36 36 H 0.96702 * 113.99844 * 269.95619 * 11 10 9 37 37 H 1.09002 * 112.84968 * 163.11622 * 12 2 1 38 38 H 1.08995 * 113.61274 * 25.42648 * 13 12 2 39 39 H 1.09001 * 113.61252 * 156.32943 * 13 12 2 40 40 H 1.08997 * 113.61545 * 89.11646 * 14 13 12 41 41 H 1.00904 * 111.00170 * 128.58082 * 15 14 13 42 42 H 1.09002 * 109.46999 * 299.99854 * 16 15 14 43 43 H 1.08992 * 109.47102 * 59.99933 * 16 15 14 44 44 H 0.97004 * 119.99797 * 359.97438 * 19 17 16 45 45 H 0.97008 * 119.99611 * 180.02562 * 23 22 20 46 46 H 1.09000 * 113.61949 * 270.88260 * 28 14 13 47 47 H 1.09000 * 113.61631 * 139.97531 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3506 1.1696 -0.1012 5 6 1.4063 2.4419 0.1228 6 6 0.4301 2.5989 1.1097 7 6 -0.2509 3.7918 1.2188 8 6 0.0283 4.8378 0.3542 9 6 0.9906 4.6960 -0.6255 10 6 1.6851 3.5019 -0.7505 11 8 2.6313 3.3614 -1.7124 12 6 2.1975 -1.2687 0.0006 13 6 1.4698 -2.4005 -0.7441 14 6 0.7868 -2.7330 0.5960 15 7 0.6577 -4.1738 0.8513 16 6 -0.7374 -4.6110 0.7083 17 6 -0.8303 -6.0909 0.9777 18 8 0.1676 -6.7196 1.2604 19 7 -2.0221 -6.7158 0.9033 20 6 -2.1065 -8.0621 1.1478 21 1 -1.2179 -8.6221 1.3996 22 6 -3.3353 -8.7064 1.0717 23 7 -4.4163 -8.0253 0.7648 24 14 -3.4501 -10.5410 1.4041 25 1 -2.1008 -11.0713 1.7252 26 1 -4.3614 -10.7799 2.5520 27 1 -3.9797 -11.2301 0.2000 28 6 2.0030 -2.0919 1.2849 29 1 -0.3633 0.9032 -0.4902 30 1 -0.3634 -0.8761 -0.5370 31 1 -0.3633 -0.0271 1.0273 32 1 0.2087 1.7862 1.7857 33 1 -1.0057 3.9121 1.9818 34 1 -0.5132 5.7678 0.4443 35 1 1.2023 5.5158 -1.2960 36 1 2.2916 3.0215 -2.5516 37 1 3.2415 -1.1548 -0.2912 38 1 0.7808 -2.0463 -1.5108 39 1 2.1352 -3.1862 -1.1019 40 1 -0.1439 -2.1894 0.7585 41 1 1.0202 -4.4136 1.7620 42 1 -1.3618 -4.0724 1.4212 43 1 -1.0811 -4.4035 -0.3050 44 1 -2.8201 -6.2130 0.6768 45 1 -5.2742 -8.4750 0.7120 46 1 2.8139 -2.7934 1.4809 47 1 1.7443 -1.4886 2.1551 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284740914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:03 Heat of formation + Delta-G solvation = -44.877698 kcal Electronic energy + Delta-G solvation = -29609.214256 eV Core-core repulsion = 25372.588338 eV Total energy + Delta-G solvation = -4236.625918 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.17548 -39.90420 -38.44171 -37.91025 -37.15307 -35.09695 -34.00751 -33.07411 -31.41838 -31.18610 -30.26395 -27.81241 -26.88012 -25.71794 -24.92565 -23.98455 -23.07870 -22.34440 -20.77605 -19.41891 -18.99011 -18.64473 -17.89317 -17.72078 -16.84765 -16.39818 -16.15504 -16.07348 -15.47578 -15.28539 -15.06544 -14.93064 -14.58639 -14.40903 -14.23774 -13.96136 -13.54307 -13.42062 -13.34545 -12.97418 -12.71702 -12.67455 -12.35132 -12.21591 -12.06623 -12.00681 -11.88110 -11.58161 -11.33893 -11.13565 -11.07893 -10.73570 -10.43725 -10.35586 -10.23348 -10.09220 -9.53898 -9.46922 -9.17881 -8.89230 -8.46551 -8.09092 -7.97770 -6.43830 -3.84435 0.44793 0.75057 2.37775 2.59945 3.14601 3.14966 3.25719 3.33124 3.69291 3.88867 4.06040 4.09847 4.34499 4.35615 4.40994 4.49407 4.50431 4.72395 4.75637 4.79451 4.89851 4.94921 5.10257 5.17510 5.18952 5.24595 5.34446 5.37308 5.42784 5.67376 5.69616 5.71772 5.73678 5.76584 5.81971 5.87132 5.90557 5.97742 6.06998 6.21298 6.24173 6.44896 7.05088 7.20812 7.25291 7.53721 7.63694 7.87071 8.04816 8.59321 9.16250 9.52399 10.03840 10.73985 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022426 B = 0.001770 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.246592 B =15812.626549 C =16584.396136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.593 5.593 3 C 0.562 3.438 4 O -0.517 6.517 5 C -0.155 4.155 6 C -0.072 4.072 7 C -0.134 4.134 8 C -0.083 4.083 9 C -0.152 4.152 10 C 0.155 3.845 11 O -0.484 6.484 12 C 0.117 3.883 13 C -0.132 4.132 14 C 0.055 3.945 15 N -0.656 5.656 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C -0.151 4.151 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.392 0.608 37 H 0.110 0.890 38 H 0.069 0.931 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.351 0.649 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.101 0.899 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.202 27.338 -2.922 27.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.326 5.326 3 C 0.350 3.650 4 O -0.392 6.392 5 C -0.159 4.159 6 C -0.090 4.090 7 C -0.152 4.152 8 C -0.101 4.101 9 C -0.171 4.171 10 C 0.109 3.891 11 O -0.294 6.294 12 C 0.013 3.987 13 C -0.171 4.171 14 C -0.056 4.056 15 N -0.288 5.288 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.191 4.191 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.153 0.847 36 H 0.249 0.751 37 H 0.128 0.872 38 H 0.088 0.912 39 H 0.124 0.876 40 H 0.092 0.908 41 H 0.172 0.828 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.120 0.880 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.889 26.844 -3.012 27.647 hybrid contribution -1.617 -0.412 0.489 1.739 sum 4.272 26.433 -2.524 26.894 Atomic orbital electron populations 1.22104 0.79537 1.03760 1.02180 1.47470 1.06809 1.05123 1.73207 1.18145 0.87073 0.83096 0.76699 1.90829 1.13499 1.86910 1.47940 1.20310 0.99841 0.94755 1.01010 1.21294 0.93014 0.98252 0.96447 1.21148 1.00849 0.93081 1.00155 1.21233 0.96164 0.98991 0.93757 1.21438 0.96982 0.97664 1.00999 1.18444 0.88223 0.91591 0.90808 1.84838 1.33098 1.87492 1.23959 1.21866 0.97350 0.81902 0.97555 1.23518 0.99872 0.96856 0.96858 1.23338 0.96804 0.88715 0.96737 1.60193 1.18600 1.12226 1.37822 1.21730 0.89566 0.95423 1.01529 1.19832 0.84428 0.88425 0.84749 1.90526 1.35770 1.67070 1.53307 1.41875 1.07713 1.09352 1.61164 1.19759 0.95364 0.83694 1.43984 0.87861 1.25267 0.94852 1.00550 0.97353 1.69621 0.99183 1.36826 1.48730 0.85795 0.78533 0.82120 0.77881 1.19205 1.20784 1.20736 1.23652 0.99282 0.98951 0.97171 0.90856 0.89810 0.92295 0.84885 0.84990 0.85080 0.84714 0.75086 0.87246 0.91240 0.87639 0.90775 0.82823 0.93986 0.89705 0.77497 0.91938 0.88025 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 7.36 59.85 0.44 0.91 16 2 N -0.59 -5.80 3.08 -174.22 -0.54 -6.33 16 3 C 0.56 6.63 6.95 -12.47 -0.09 6.55 16 4 O -0.52 -8.18 15.99 -5.24 -0.08 -8.26 16 5 C -0.16 -1.48 4.72 -104.85 -0.50 -1.98 16 6 C -0.07 -0.51 7.96 -39.20 -0.31 -0.83 16 7 C -0.13 -0.76 10.02 -39.63 -0.40 -1.16 16 8 C -0.08 -0.45 10.03 -39.54 -0.40 -0.85 16 9 C -0.15 -1.02 9.98 -39.48 -0.39 -1.42 16 10 C 0.16 1.40 6.69 -38.70 -0.26 1.14 16 11 O -0.48 -4.57 12.51 -29.20 -0.37 -4.94 16 12 C 0.12 1.25 4.42 -67.11 -0.30 0.96 16 13 C -0.13 -1.42 7.10 -25.77 -0.18 -1.60 16 14 C 0.05 0.62 3.50 -66.76 -0.23 0.39 16 15 N -0.66 -10.11 6.19 -106.98 -0.66 -10.78 16 16 C 0.05 0.85 6.01 -4.97 -0.03 0.82 16 17 C 0.44 10.24 7.82 -10.98 -0.09 10.15 16 18 O -0.58 -15.72 15.78 5.55 0.09 -15.63 16 19 N -0.56 -14.13 5.29 -10.96 -0.06 -14.18 16 20 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 21 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 24 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 C -0.15 -1.61 7.39 -25.92 -0.19 -1.80 16 29 H 0.07 0.44 6.44 -51.93 -0.33 0.10 16 30 H 0.08 0.59 5.07 -51.93 -0.26 0.33 16 31 H 0.06 0.36 7.14 -51.93 -0.37 -0.01 16 32 H 0.13 0.81 6.73 -52.49 -0.35 0.46 16 33 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 34 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 35 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.39 1.90 9.06 45.56 0.41 2.32 16 37 H 0.11 1.32 7.28 -51.93 -0.38 0.94 16 38 H 0.07 0.69 6.98 -51.93 -0.36 0.32 16 39 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.07 0.76 5.51 -51.93 -0.29 0.47 16 41 H 0.35 5.67 8.25 -39.29 -0.32 5.35 16 42 H 0.04 0.63 8.13 -51.93 -0.42 0.21 16 43 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 45 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 46 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 388.60 15.07 5.86 5.86 Total: -1.00 -35.60 388.60 -8.70 -44.29 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -5.47 Total: 14.31 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -3.16 Total: 3.34 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.53 Total: -54.86 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.36 Total: -28.84 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.60 -8.70 -44.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284740914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.583 kcal (2) G-P(sol) polarization free energy of solvation -35.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds