Wall clock time and date at job start Wed Apr 1 2020 04:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99955 * 2 1 4 4 C 1.50697 * 109.47069 * 270.00029 * 3 2 1 5 5 C 1.38383 * 119.92461 * 269.97541 * 4 3 2 6 6 C 1.38336 * 120.29148 * 180.02562 * 5 4 3 7 7 C 1.37985 * 120.14460 * 359.70103 * 6 5 4 8 8 C 1.39560 * 119.85027 * 0.57413 * 7 6 5 9 9 C 1.47845 * 120.14223 * 179.72201 * 8 7 6 10 10 N 1.34776 * 120.00131 * 359.72754 * 9 8 7 11 11 O 1.21552 * 119.99586 * 179.72373 * 9 8 7 12 12 C 1.37926 * 119.92942 * 90.00523 * 4 3 2 13 13 C 1.34771 * 120.00109 * 179.97438 * 2 1 3 14 14 O 1.21354 * 120.00509 * 176.45447 * 13 2 1 15 15 C 1.49449 * 120.00240 * 356.45395 * 13 2 1 16 16 O 1.21355 * 119.99884 * 5.91960 * 15 13 2 17 17 N 1.34777 * 120.00683 * 185.91384 * 15 13 2 18 18 C 1.46493 * 120.00298 * 180.02562 * 17 15 13 19 19 C 1.53004 * 109.47223 * 180.02562 * 18 17 15 20 20 C 1.52997 * 109.47086 * 179.97438 * 19 18 17 21 21 C 1.50709 * 109.47082 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99478 * 0.02562 * 21 20 19 23 23 C 1.37865 * 120.00150 * 180.02562 * 21 20 19 24 24 N 1.31521 * 120.00037 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00273 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46866 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47101 * 119.99646 * 25 23 21 28 28 H 1.48496 * 109.46944 * 239.99924 * 25 23 21 29 29 H 1.09002 * 109.47205 * 95.97443 * 1 2 3 30 30 H 1.08997 * 109.47023 * 215.97118 * 1 2 3 31 31 H 1.08996 * 109.47320 * 335.97728 * 1 2 3 32 32 H 1.09005 * 109.47059 * 149.99945 * 3 2 1 33 33 H 1.08999 * 109.47191 * 30.00436 * 3 2 1 34 34 H 1.07999 * 119.85572 * 0.02562 * 5 4 3 35 35 H 1.08004 * 119.92899 * 179.97438 * 6 5 4 36 36 H 1.07995 * 120.07421 * 180.27569 * 7 6 5 37 37 H 0.97001 * 119.99646 * 359.97438 * 10 9 8 38 38 H 0.96998 * 119.99655 * 179.71980 * 10 9 8 39 39 H 1.08007 * 120.07343 * 0.02562 * 12 4 3 40 40 H 0.97006 * 119.99385 * 0.02562 * 17 15 13 41 41 H 1.09005 * 109.47016 * 299.99961 * 18 17 15 42 42 H 1.08995 * 109.47430 * 60.00106 * 18 17 15 43 43 H 1.08991 * 109.47004 * 300.00428 * 19 18 17 44 44 H 1.09001 * 109.46717 * 60.00339 * 19 18 17 45 45 H 1.08991 * 109.47482 * 300.00266 * 20 19 18 46 46 H 1.09001 * 109.46616 * 60.00828 * 20 19 18 47 47 H 0.97004 * 120.00047 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 6 3.6026 1.3038 -2.0715 6 6 3.8411 1.6992 -3.3755 7 6 2.9254 2.4907 -4.0381 8 6 1.7624 2.9023 -3.3857 9 6 0.7798 3.7556 -4.0874 10 7 1.0090 4.1421 -5.3581 11 8 -0.2346 4.1084 -3.5183 12 6 1.5282 2.5002 -2.0696 13 6 2.1389 -1.1671 0.0005 14 8 3.3507 -1.1683 -0.0645 15 6 1.3938 -2.4602 0.0811 16 8 0.1811 -2.4654 0.0378 17 7 2.0687 -3.6205 0.2019 18 6 1.3384 -4.8880 0.2803 19 6 2.3334 -6.0427 0.4129 20 6 1.5706 -7.3663 0.4955 21 6 2.5508 -8.5038 0.6255 22 1 3.6116 -8.3025 0.6474 23 6 2.0932 -9.8011 0.7163 24 7 0.8013 -10.0462 0.6891 25 14 3.3081 -11.2109 0.8781 26 1 4.6923 -10.6731 0.8851 27 1 3.0544 -11.9398 2.1469 28 1 3.1432 -12.1403 -0.2682 29 1 -0.3634 -0.1070 -1.0221 30 1 -0.3633 -0.8317 0.6036 31 1 -0.3634 0.9386 0.4183 32 1 3.1499 1.1384 0.5139 33 1 1.6084 2.0284 0.5139 34 1 4.3202 0.6803 -1.5590 35 1 4.7438 1.3839 -3.8776 36 1 3.1106 2.7950 -5.0576 37 1 1.8187 3.8608 -5.8120 38 1 0.3624 4.6985 -5.8198 39 1 0.6283 2.8124 -1.5603 40 1 3.0381 -3.6163 0.2368 41 1 0.6799 -4.8747 1.1490 42 1 0.7445 -5.0217 -0.6238 43 1 2.9922 -6.0560 -0.4553 44 1 2.9269 -5.9088 1.3173 45 1 0.9121 -7.3527 1.3639 46 1 0.9769 -7.5005 -0.4087 47 1 0.4794 -10.9590 0.7534 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322764662.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:52 Heat of formation + Delta-G solvation = -82.733903 kcal Electronic energy + Delta-G solvation = -29026.635066 eV Core-core repulsion = 24788.367580 eV Total energy + Delta-G solvation = -4238.267486 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.01445 -40.42521 -38.98282 -38.26865 -36.41111 -35.36446 -34.32221 -33.34697 -32.14600 -31.46913 -31.26320 -27.85126 -27.44007 -26.43995 -24.62326 -24.02177 -22.67043 -21.94882 -20.85115 -20.62777 -19.65701 -18.54914 -17.73840 -17.32746 -17.03977 -16.47065 -16.43032 -16.26328 -15.67696 -15.43891 -15.33268 -15.14708 -14.78635 -14.72165 -14.45091 -14.15081 -14.00665 -13.83974 -13.26233 -13.13044 -12.85897 -12.74633 -12.37062 -12.30854 -12.06123 -11.88397 -11.79828 -11.58816 -11.33737 -10.94268 -10.78016 -10.58840 -10.52889 -10.21135 -9.92465 -9.72476 -9.47522 -9.39442 -9.26958 -9.15205 -9.07546 -8.88394 -8.39675 -6.04174 -4.07215 0.39507 0.81863 1.39252 2.21185 2.51155 2.99947 3.16355 3.29041 3.35454 3.36899 3.40607 3.56730 4.20639 4.27400 4.33093 4.41842 4.44874 4.61368 4.72409 4.87918 4.99778 5.07391 5.22717 5.31922 5.33780 5.47355 5.51866 5.57526 5.67291 5.76903 5.78978 5.92804 6.00477 6.06163 6.09912 6.25985 6.32450 6.41578 6.52169 6.68451 6.80051 6.81506 6.93493 7.28107 7.60359 7.66913 7.71721 7.76233 7.94196 8.03836 8.35356 8.99520 9.57339 11.07079 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019093 B = 0.001665 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.187265 B =16810.597682 C =17011.562535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.585 5.585 3 C 0.152 3.848 4 C -0.118 4.118 5 C -0.065 4.065 6 C -0.130 4.130 7 C -0.082 4.082 8 C -0.147 4.147 9 C 0.565 3.435 10 N -0.852 5.852 11 O -0.540 6.540 12 C -0.042 4.042 13 C 0.509 3.491 14 O -0.521 6.521 15 C 0.500 3.500 16 O -0.519 6.519 17 N -0.691 5.691 18 C 0.114 3.886 19 C -0.122 4.122 20 C 0.024 3.976 21 C -0.522 4.522 22 H 0.057 0.943 23 C 0.057 3.943 24 N -0.894 5.894 25 Si 0.893 3.107 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.060 0.940 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.126 0.874 37 H 0.401 0.599 38 H 0.405 0.595 39 H 0.136 0.864 40 H 0.410 0.590 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.324 31.127 -8.678 32.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.318 5.318 3 C 0.030 3.970 4 C -0.119 4.119 5 C -0.083 4.083 6 C -0.147 4.147 7 C -0.100 4.100 8 C -0.150 4.150 9 C 0.351 3.649 10 N -0.416 5.416 11 O -0.417 6.417 12 C -0.061 4.061 13 C 0.292 3.708 14 O -0.397 6.397 15 C 0.280 3.720 16 O -0.397 6.397 17 N -0.342 5.342 18 C -0.008 4.008 19 C -0.161 4.161 20 C -0.014 4.014 21 C -0.561 4.561 22 H 0.075 0.925 23 C -0.145 4.145 24 N -0.533 5.533 25 Si 0.721 3.279 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.078 0.922 30 H 0.129 0.871 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.230 0.770 38 H 0.236 0.764 39 H 0.154 0.846 40 H 0.246 0.754 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.359 31.083 -8.198 32.321 hybrid contribution 1.147 -0.738 -0.572 1.479 sum 4.506 30.346 -8.770 31.907 Atomic orbital electron populations 1.22485 0.77166 1.04389 1.03816 1.47753 1.08403 1.04587 1.71031 1.20525 0.99030 0.84810 0.92610 1.20196 0.95227 0.99025 0.97428 1.21524 0.96438 0.95939 0.94441 1.21159 0.99857 0.98681 0.95051 1.21310 0.92992 0.96475 0.99269 1.19824 0.96385 1.02887 0.95890 1.18291 0.85621 0.79332 0.81627 1.43753 1.26948 1.56016 1.14864 1.90828 1.28049 1.56349 1.66487 1.21160 0.98157 0.93932 0.92867 1.20368 0.87505 0.85320 0.77627 1.90720 1.13444 1.87226 1.48301 1.19969 0.87723 0.85258 0.79004 1.90669 1.13306 1.86534 1.49150 1.46085 1.11674 1.05997 1.70457 1.21843 0.95780 0.80752 1.02427 1.21924 0.97797 0.95129 1.01201 1.19039 0.95522 0.89131 0.97693 1.21238 0.93148 0.91304 1.50368 0.92516 1.25028 0.95156 0.99015 0.95276 1.69977 1.12608 1.20196 1.50484 0.86520 0.81401 0.82314 0.77662 1.19735 1.20993 1.20999 0.92158 0.87054 0.91487 0.88318 0.88683 0.84513 0.85062 0.85650 0.76953 0.76360 0.84597 0.75370 0.91070 0.91102 0.92450 0.92444 0.96174 0.96191 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 9.59 59.85 0.57 1.18 16 2 N -0.58 -6.07 2.86 -183.47 -0.52 -6.59 16 3 C 0.15 1.23 5.54 -5.19 -0.03 1.20 16 4 C -0.12 -1.01 5.46 -104.68 -0.57 -1.59 16 5 C -0.06 -0.55 9.61 -39.49 -0.38 -0.93 16 6 C -0.13 -0.90 10.03 -39.64 -0.40 -1.30 16 7 C -0.08 -0.51 9.54 -39.18 -0.37 -0.89 16 8 C -0.15 -1.22 5.87 -104.97 -0.62 -1.84 16 9 C 0.56 5.04 8.05 -12.33 -0.10 4.94 16 10 N -0.85 -3.96 8.82 30.53 0.27 -3.69 16 11 O -0.54 -6.94 17.18 5.32 0.09 -6.85 16 12 C -0.04 -0.37 9.24 -39.19 -0.36 -0.73 16 13 C 0.51 6.51 7.73 -11.59 -0.09 6.42 16 14 O -0.52 -7.14 15.39 5.49 0.08 -7.05 16 15 C 0.50 7.26 7.77 -11.59 -0.09 7.17 16 16 O -0.52 -8.34 13.14 5.49 0.07 -8.27 16 17 N -0.69 -10.06 5.55 -60.73 -0.34 -10.39 16 18 C 0.11 1.91 5.67 -4.04 -0.02 1.89 16 19 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 20 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 21 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 22 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 23 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 24 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 25 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 26 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.11 1.27 5.36 -51.94 -0.28 0.99 16 31 H 0.07 0.47 7.83 -51.93 -0.41 0.06 16 32 H 0.10 0.80 7.42 -51.93 -0.39 0.41 16 33 H 0.09 0.55 7.80 -51.93 -0.40 0.14 16 34 H 0.14 1.21 7.42 -52.49 -0.39 0.82 16 35 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 36 H 0.13 0.37 6.40 -52.49 -0.34 0.03 16 37 H 0.40 0.73 6.86 -40.82 -0.28 0.45 16 38 H 0.41 1.42 8.93 -40.82 -0.36 1.05 16 39 H 0.14 1.20 7.65 -52.48 -0.40 0.80 16 40 H 0.41 5.43 7.96 -40.82 -0.32 5.11 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 400.73 15.07 6.04 6.04 Total: -1.00 -34.93 400.73 -8.23 -43.16 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.49 Total: 2.82 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -3.15 Total: 0.26 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.14 Total: -46.46 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.25 Total: -22.17 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.93 -8.23 -43.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322764662.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.570 kcal (2) G-P(sol) polarization free energy of solvation -34.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds