Wall clock time and date at job start Wed Apr 1 2020 04:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99955 * 2 1 4 4 C 1.50697 * 109.47069 * 270.00029 * 3 2 1 5 5 C 1.38383 * 119.92461 * 269.97541 * 4 3 2 6 6 C 1.38336 * 120.29148 * 180.02562 * 5 4 3 7 7 C 1.37985 * 120.14460 * 359.70103 * 6 5 4 8 8 C 1.39560 * 119.85027 * 0.57413 * 7 6 5 9 9 C 1.47845 * 120.14223 * 179.72201 * 8 7 6 10 10 N 1.34776 * 120.00131 * 359.72754 * 9 8 7 11 11 O 1.21552 * 119.99586 * 179.72373 * 9 8 7 12 12 C 1.37926 * 119.92942 * 90.00523 * 4 3 2 13 13 C 1.34771 * 120.00109 * 179.97438 * 2 1 3 14 14 O 1.21354 * 120.00509 * 176.45447 * 13 2 1 15 15 C 1.49449 * 120.00240 * 356.45395 * 13 2 1 16 16 O 1.21355 * 119.99884 * 5.91960 * 15 13 2 17 17 N 1.34777 * 120.00683 * 185.91384 * 15 13 2 18 18 C 1.46493 * 120.00298 * 180.02562 * 17 15 13 19 19 C 1.53004 * 109.47223 * 180.02562 * 18 17 15 20 20 C 1.52997 * 109.47086 * 179.97438 * 19 18 17 21 21 C 1.50709 * 109.47082 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99478 * 0.02562 * 21 20 19 23 23 C 1.37865 * 120.00150 * 180.02562 * 21 20 19 24 24 N 1.31521 * 120.00037 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00273 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46866 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47101 * 119.99646 * 25 23 21 28 28 H 1.48496 * 109.46944 * 239.99924 * 25 23 21 29 29 H 1.09002 * 109.47205 * 95.97443 * 1 2 3 30 30 H 1.08997 * 109.47023 * 215.97118 * 1 2 3 31 31 H 1.08996 * 109.47320 * 335.97728 * 1 2 3 32 32 H 1.09005 * 109.47059 * 149.99945 * 3 2 1 33 33 H 1.08999 * 109.47191 * 30.00436 * 3 2 1 34 34 H 1.07999 * 119.85572 * 0.02562 * 5 4 3 35 35 H 1.08004 * 119.92899 * 179.97438 * 6 5 4 36 36 H 1.07995 * 120.07421 * 180.27569 * 7 6 5 37 37 H 0.97001 * 119.99646 * 359.97438 * 10 9 8 38 38 H 0.96998 * 119.99655 * 179.71980 * 10 9 8 39 39 H 1.08007 * 120.07343 * 0.02562 * 12 4 3 40 40 H 0.97006 * 119.99385 * 0.02562 * 17 15 13 41 41 H 1.09005 * 109.47016 * 299.99961 * 18 17 15 42 42 H 1.08995 * 109.47430 * 60.00106 * 18 17 15 43 43 H 1.08991 * 109.47004 * 300.00428 * 19 18 17 44 44 H 1.09001 * 109.46717 * 60.00339 * 19 18 17 45 45 H 1.08991 * 109.47482 * 300.00266 * 20 19 18 46 46 H 1.09001 * 109.46616 * 60.00828 * 20 19 18 47 47 H 0.97004 * 120.00047 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 6 3.6026 1.3038 -2.0715 6 6 3.8411 1.6992 -3.3755 7 6 2.9254 2.4907 -4.0381 8 6 1.7624 2.9023 -3.3857 9 6 0.7798 3.7556 -4.0874 10 7 1.0090 4.1421 -5.3581 11 8 -0.2346 4.1084 -3.5183 12 6 1.5282 2.5002 -2.0696 13 6 2.1389 -1.1671 0.0005 14 8 3.3507 -1.1683 -0.0645 15 6 1.3938 -2.4602 0.0811 16 8 0.1811 -2.4654 0.0378 17 7 2.0687 -3.6205 0.2019 18 6 1.3384 -4.8880 0.2803 19 6 2.3334 -6.0427 0.4129 20 6 1.5706 -7.3663 0.4955 21 6 2.5508 -8.5038 0.6255 22 1 3.6116 -8.3025 0.6474 23 6 2.0932 -9.8011 0.7163 24 7 0.8013 -10.0462 0.6891 25 14 3.3081 -11.2109 0.8781 26 1 4.6923 -10.6731 0.8851 27 1 3.0544 -11.9398 2.1469 28 1 3.1432 -12.1403 -0.2682 29 1 -0.3634 -0.1070 -1.0221 30 1 -0.3633 -0.8317 0.6036 31 1 -0.3634 0.9386 0.4183 32 1 3.1499 1.1384 0.5139 33 1 1.6084 2.0284 0.5139 34 1 4.3202 0.6803 -1.5590 35 1 4.7438 1.3839 -3.8776 36 1 3.1106 2.7950 -5.0576 37 1 1.8187 3.8608 -5.8120 38 1 0.3624 4.6985 -5.8198 39 1 0.6283 2.8124 -1.5603 40 1 3.0381 -3.6163 0.2368 41 1 0.6799 -4.8747 1.1490 42 1 0.7445 -5.0217 -0.6238 43 1 2.9922 -6.0560 -0.4553 44 1 2.9269 -5.9088 1.3173 45 1 0.9121 -7.3527 1.3639 46 1 0.9769 -7.5005 -0.4087 47 1 0.4794 -10.9590 0.7534 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322764662.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:51 Heat of formation + Delta-G solvation = -108.371984 kcal Electronic energy + Delta-G solvation = -29027.746817 eV Core-core repulsion = 24788.367580 eV Total energy + Delta-G solvation = -4239.379236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.97838 -41.13660 -39.89545 -39.12070 -37.49906 -36.62021 -35.20409 -34.91114 -33.04264 -32.77978 -32.04671 -29.10499 -28.43322 -27.60521 -25.60466 -25.12887 -23.81736 -22.78098 -22.37144 -21.38659 -20.76297 -19.10241 -18.82446 -18.47817 -18.12498 -17.78400 -17.36236 -17.01780 -16.78570 -16.44904 -16.41227 -16.18475 -15.86676 -15.70812 -15.62444 -15.13639 -14.93696 -14.73107 -14.30623 -14.21376 -13.87074 -13.77653 -13.61477 -13.46689 -13.43824 -13.03228 -12.78484 -12.66501 -12.56410 -12.38749 -12.32534 -12.15030 -11.69902 -11.53892 -11.23982 -11.20416 -10.77398 -10.55318 -10.52989 -10.31401 -10.00994 -9.98724 -9.78682 -8.19383 -6.30260 -0.21072 0.20815 0.33497 1.28584 1.41903 1.42517 1.55419 1.80919 2.07248 2.40213 2.46011 2.50048 2.86991 3.14654 3.28015 3.65418 3.78241 3.83140 4.08987 4.09514 4.15126 4.18736 4.26464 4.30583 4.51981 4.52926 4.60146 4.67101 4.77302 4.82972 4.92078 4.95867 5.04490 5.15264 5.18183 5.22292 5.34875 5.36487 5.48057 5.52271 5.71064 5.79474 5.84771 5.85102 5.88101 6.16912 6.24309 6.37172 6.64111 6.86976 6.90707 7.24159 7.39252 8.92639 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019093 B = 0.001665 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.187265 B =16810.597682 C =17011.562535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.576 5.576 3 C 0.150 3.850 4 C -0.125 4.125 5 C -0.078 4.078 6 C -0.132 4.132 7 C -0.071 4.071 8 C -0.161 4.161 9 C 0.561 3.439 10 N -0.830 5.830 11 O -0.589 6.589 12 C -0.053 4.053 13 C 0.511 3.489 14 O -0.532 6.532 15 C 0.498 3.502 16 O -0.537 6.537 17 N -0.686 5.686 18 C 0.129 3.871 19 C -0.105 4.105 20 C 0.024 3.976 21 C -0.541 4.541 22 H 0.064 0.936 23 C -0.002 4.002 24 N -0.933 5.933 25 Si 0.965 3.035 26 H -0.260 1.260 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.130 0.870 35 H 0.154 0.846 36 H 0.162 0.838 37 H 0.417 0.583 38 H 0.413 0.587 39 H 0.130 0.870 40 H 0.419 0.581 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.067 0.933 45 H -0.003 1.003 46 H -0.004 1.004 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.348 32.317 -9.713 34.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.308 5.308 3 C 0.029 3.971 4 C -0.127 4.127 5 C -0.096 4.096 6 C -0.149 4.149 7 C -0.090 4.090 8 C -0.164 4.164 9 C 0.348 3.652 10 N -0.394 5.394 11 O -0.470 6.470 12 C -0.073 4.073 13 C 0.293 3.707 14 O -0.409 6.409 15 C 0.279 3.721 16 O -0.416 6.416 17 N -0.339 5.339 18 C 0.006 3.994 19 C -0.143 4.143 20 C -0.014 4.014 21 C -0.579 4.579 22 H 0.083 0.917 23 C -0.200 4.200 24 N -0.573 5.573 25 Si 0.790 3.210 26 H -0.184 1.184 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.138 0.862 34 H 0.148 0.852 35 H 0.172 0.828 36 H 0.180 0.820 37 H 0.250 0.750 38 H 0.245 0.755 39 H 0.148 0.852 40 H 0.256 0.744 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.015 0.985 46 H 0.014 0.986 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.424 32.318 -9.276 34.057 hybrid contribution 0.499 -1.028 -0.317 1.186 sum 5.923 31.290 -9.594 33.259 Atomic orbital electron populations 1.22456 0.76712 1.05329 1.03167 1.47831 1.08772 1.04667 1.69500 1.20739 0.99330 0.84062 0.92951 1.20180 0.95462 0.99451 0.97563 1.21638 0.96383 0.96236 0.95387 1.21467 1.00741 0.98228 0.94503 1.21662 0.91562 0.95113 1.00648 1.19948 0.97167 1.03301 0.95951 1.18467 0.85064 0.79159 0.82540 1.43588 1.27547 1.54775 1.13486 1.90802 1.29988 1.58402 1.67837 1.21203 0.98151 0.94428 0.93502 1.19993 0.87234 0.85247 0.78252 1.90716 1.13604 1.87277 1.49348 1.20354 0.87605 0.85840 0.78264 1.90677 1.14191 1.86961 1.49730 1.45888 1.11975 1.05325 1.70670 1.21452 0.95024 0.81178 1.01785 1.21633 0.97599 0.92990 1.02106 1.18943 0.95155 0.91863 0.95405 1.21712 0.93963 0.92352 1.49895 0.91738 1.25983 0.97004 1.02087 0.94903 1.70109 1.14701 1.20944 1.51584 0.85391 0.79324 0.78622 0.77646 1.18411 1.20559 1.20571 0.92966 0.88728 0.88473 0.88234 0.86180 0.85174 0.82793 0.82042 0.75048 0.75475 0.85170 0.74411 0.91687 0.91947 0.91529 0.91412 0.98490 0.98591 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.21 9.59 127.77 1.23 2.43 16 2 N -0.58 -11.47 2.86 -852.73 -2.44 -13.90 16 3 C 0.15 2.25 5.54 85.63 0.47 2.73 16 4 C -0.13 -2.04 5.46 -19.90 -0.11 -2.15 16 5 C -0.08 -1.22 9.61 22.33 0.21 -1.01 16 6 C -0.13 -1.51 10.03 22.23 0.22 -1.29 16 7 C -0.07 -0.71 9.54 22.53 0.21 -0.49 16 8 C -0.16 -2.46 5.87 -20.09 -0.12 -2.58 16 9 C 0.56 9.43 8.05 86.79 0.70 10.13 16 10 N -0.83 -5.96 8.82 -175.60 -1.55 -7.51 16 11 O -0.59 -15.22 17.18 -3.88 -0.07 -15.28 16 12 C -0.05 -0.91 9.24 22.52 0.21 -0.71 16 13 C 0.51 12.75 7.73 87.27 0.67 13.42 16 14 O -0.53 -14.13 15.39 -3.26 -0.05 -14.18 16 15 C 0.50 14.35 7.77 87.27 0.68 15.03 16 16 O -0.54 -17.40 13.14 -3.26 -0.04 -17.45 16 17 N -0.69 -19.67 5.55 -464.42 -2.58 -22.25 16 18 C 0.13 4.33 5.67 86.38 0.49 4.82 16 19 C -0.11 -4.01 5.27 30.59 0.16 -3.85 16 20 C 0.02 1.23 4.97 29.85 0.15 1.37 16 21 C -0.54 -30.02 9.11 25.60 0.23 -29.78 16 22 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 23 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 24 N -0.93 -56.35 13.29 21.44 0.28 -56.07 16 25 Si 0.97 43.69 29.54 68.60 2.03 45.71 16 26 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 28 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 2.14 5.36 -2.47 -0.01 2.13 16 31 H 0.10 1.21 7.83 -2.39 -0.02 1.19 16 32 H 0.10 1.50 7.42 -2.38 -0.02 1.49 16 33 H 0.12 1.18 7.80 -2.39 -0.02 1.16 16 34 H 0.13 2.20 7.42 -2.91 -0.02 2.18 16 35 H 0.15 1.03 8.06 -2.91 -0.02 1.00 16 36 H 0.16 0.29 6.40 -2.91 -0.02 0.27 16 37 H 0.42 0.20 6.86 -92.71 -0.64 -0.43 16 38 H 0.41 2.12 8.93 -92.71 -0.83 1.29 16 39 H 0.13 2.30 7.65 -2.91 -0.02 2.28 16 40 H 0.42 10.67 7.96 -92.70 -0.74 9.94 16 41 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 42 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 46 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 47 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -76.77 400.73 0.31 -76.46 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -1.16 Total: 16.03 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 5.88 Total: 8.44 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -6.28 Total: -99.73 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -0.16 Total: -46.91 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -76.77 0.31 -76.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322764662.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.908 kcal (2) G-P(sol) polarization free energy of solvation -76.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds