Wall clock time and date at job start Wed Apr 1 2020 04:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 119.99822 * 2 1 4 4 C 1.34779 * 120.00165 * 179.97438 * 2 1 3 5 5 O 1.21282 * 119.99927 * 0.02562 * 4 2 1 6 6 C 1.50699 * 120.00033 * 179.97438 * 4 2 1 7 7 N 1.46496 * 109.46926 * 180.02562 * 6 4 2 8 8 C 1.34777 * 119.99875 * 180.02562 * 7 6 4 9 9 O 1.21346 * 119.99870 * 0.26710 * 8 7 6 10 10 C 1.49456 * 119.99882 * 179.97438 * 8 7 6 11 11 O 1.21346 * 119.99809 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99878 * 179.97438 * 10 8 7 13 13 C 1.46496 * 120.00258 * 179.97438 * 12 10 8 14 14 H 1.09002 * 109.46776 * 35.00022 * 13 12 10 15 15 C 1.52998 * 109.47246 * 155.00083 * 13 12 10 16 16 C 1.50697 * 109.47439 * 295.00322 * 15 13 12 17 17 H 1.08007 * 119.99628 * 359.97438 * 16 15 13 18 18 C 1.37875 * 120.00471 * 180.02562 * 16 15 13 19 19 N 1.31519 * 119.99612 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00481 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47274 * 89.99797 * 20 18 16 22 22 H 1.48496 * 109.47331 * 209.99853 * 20 18 16 23 23 H 1.48501 * 109.46858 * 329.99902 * 20 18 16 24 24 C 1.50696 * 109.47365 * 275.00798 * 13 12 10 25 25 C 1.38236 * 119.99802 * 319.72135 * 24 13 12 26 26 C 1.38242 * 120.00141 * 179.79215 * 25 24 13 27 27 C 1.38232 * 119.99627 * 0.44159 * 26 25 24 28 28 C 1.38232 * 119.99889 * 359.81024 * 27 26 25 29 29 C 1.38225 * 120.00662 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.47343 * 269.99923 * 1 2 3 31 31 H 1.09002 * 109.47379 * 29.99638 * 1 2 3 32 32 H 1.09005 * 109.47039 * 150.00078 * 1 2 3 33 33 H 1.08998 * 109.47145 * 270.00037 * 3 2 1 34 34 H 1.09001 * 109.46833 * 30.00327 * 3 2 1 35 35 H 1.08998 * 109.46879 * 150.00184 * 3 2 1 36 36 H 1.08992 * 109.46824 * 60.00123 * 6 4 2 37 37 H 1.08996 * 109.46811 * 299.99949 * 6 4 2 38 38 H 0.96999 * 120.00082 * 359.97438 * 7 6 4 39 39 H 0.96999 * 120.00047 * 0.02562 * 12 10 8 40 40 H 1.08998 * 109.47261 * 55.00563 * 15 13 12 41 41 H 1.09000 * 109.47285 * 175.00317 * 15 13 12 42 42 H 0.96995 * 119.99952 * 180.02562 * 19 18 16 43 43 H 1.08001 * 120.00085 * 359.97438 * 25 24 13 44 44 H 1.07997 * 119.99779 * 180.27319 * 26 25 24 45 45 H 1.07996 * 119.99638 * 179.83667 * 27 26 25 46 46 H 1.08007 * 119.99514 * 180.02562 * 28 27 26 47 47 H 1.08001 * 120.00946 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1672 -0.0001 7 7 4.1342 -2.5483 0.0001 8 6 5.4593 -2.7946 0.0001 9 8 6.2478 -1.8723 0.0050 10 6 5.9575 -4.2037 0.0008 11 8 5.1689 -5.1260 0.0018 12 7 7.2825 -4.4500 0.0004 13 6 7.7709 -5.8311 0.0016 14 1 7.0980 -6.4549 -0.5868 15 6 9.1732 -5.8768 -0.6087 16 6 9.1022 -5.4803 -2.0608 17 1 8.1518 -5.2220 -2.5042 18 6 10.2502 -5.4483 -2.8237 19 7 11.4074 -5.7633 -2.2839 20 14 10.1624 -4.9562 -4.6235 21 1 10.3386 -3.4866 -4.7441 22 1 11.2381 -5.6473 -5.3788 23 1 8.8406 -5.3434 -5.1786 24 6 7.8223 -6.3445 1.4175 25 6 8.2608 -5.5196 2.4363 26 6 8.3039 -5.9891 3.7359 27 6 7.9170 -7.2865 4.0151 28 6 7.4835 -8.1130 2.9954 29 6 7.4362 -7.6422 1.6967 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 2.3791 1.5835 -1.0276 34 1 1.6084 2.0284 0.5139 35 1 3.1499 1.1384 0.5138 36 1 4.0095 -0.6528 0.8894 37 1 4.0088 -0.6539 -0.8905 38 1 3.5039 -3.2856 0.0008 39 1 7.9129 -3.7127 0.0000 40 1 9.8246 -5.1851 -0.0746 41 1 9.5722 -6.8879 -0.5272 42 1 12.2151 -5.7405 -2.8204 43 1 8.5670 -4.5073 2.2176 44 1 8.6423 -5.3432 4.5324 45 1 7.9532 -7.6541 5.0299 46 1 7.1808 -9.1266 3.2137 47 1 7.0978 -8.2881 0.9000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324325311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:32 Heat of formation + Delta-G solvation = -74.949597 kcal Electronic energy + Delta-G solvation = -29983.251775 eV Core-core repulsion = 25745.321842 eV Total energy + Delta-G solvation = -4237.929933 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.73951 -40.02186 -39.01753 -37.92634 -36.10254 -35.50115 -34.56780 -32.72732 -31.14689 -30.46893 -29.81388 -28.85109 -27.93193 -26.18582 -25.14942 -23.41286 -22.30496 -21.95078 -20.45170 -20.02638 -19.73492 -18.45928 -17.24771 -16.92980 -16.65517 -16.42291 -16.34730 -16.13098 -15.57978 -15.26346 -14.88334 -14.82808 -14.50338 -14.25443 -14.08460 -13.51845 -13.50268 -13.29870 -13.15561 -13.03503 -13.00635 -12.76759 -12.56714 -12.46026 -12.44924 -12.11268 -11.62409 -11.39468 -11.13996 -10.95077 -10.72786 -10.61446 -10.46291 -10.36624 -9.81065 -9.41259 -9.40059 -9.26133 -9.20925 -8.63214 -8.52048 -8.44713 -8.21570 -6.08322 -4.12021 1.68856 1.75286 1.79361 2.11644 2.23227 2.79313 3.29586 3.36263 3.40306 3.53044 3.93396 3.95856 4.22866 4.41422 4.55653 4.79141 4.81988 4.86233 4.92894 4.99726 5.16242 5.19737 5.25067 5.26569 5.28829 5.35652 5.38689 5.52011 5.87814 5.88911 5.91713 6.03566 6.09805 6.32001 6.40148 6.52374 6.70738 6.75690 6.83236 6.84354 7.03597 7.13408 7.38571 7.47526 7.54141 7.61405 7.76723 7.87551 8.02626 8.24214 8.44396 8.93098 9.53289 11.02190 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008009 B = 0.003102 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3495.164337 B = 9023.745044 C =11640.565714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.620 5.620 3 C 0.071 3.929 4 C 0.508 3.492 5 O -0.528 6.528 6 C 0.101 3.899 7 N -0.697 5.697 8 C 0.513 3.487 9 O -0.519 6.519 10 C 0.504 3.496 11 O -0.527 6.527 12 N -0.664 5.664 13 C 0.183 3.817 14 H 0.092 0.908 15 C 0.023 3.977 16 C -0.523 4.523 17 H 0.058 0.942 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.076 4.076 25 C -0.108 4.108 26 C -0.124 4.124 27 C -0.133 4.133 28 C -0.123 4.123 29 C -0.106 4.106 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.423 0.577 39 H 0.414 0.586 40 H 0.027 0.973 41 H 0.039 0.961 42 H 0.262 0.738 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.256 11.517 9.297 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.355 5.355 3 C -0.072 4.072 4 C 0.295 3.705 5 O -0.404 6.404 6 C -0.026 4.026 7 N -0.355 5.355 8 C 0.294 3.706 9 O -0.394 6.394 10 C 0.284 3.716 11 O -0.404 6.404 12 N -0.315 5.315 13 C 0.079 3.921 14 H 0.110 0.890 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.720 3.280 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.077 4.077 25 C -0.126 4.126 26 C -0.142 4.142 27 C -0.151 4.151 28 C -0.141 4.141 29 C -0.124 4.124 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.263 0.737 39 H 0.250 0.750 40 H 0.046 0.954 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.135 0.865 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.377 10.938 9.241 21.754 hybrid contribution 0.089 0.530 -1.008 1.142 sum -16.288 11.468 8.234 21.555 Atomic orbital electron populations 1.21690 0.78505 1.03450 1.02136 1.47661 1.07464 1.06255 1.74085 1.21950 0.97555 0.85001 1.02644 1.20563 0.89960 0.83706 0.76245 1.90746 1.69778 1.30771 1.49079 1.21149 0.90752 0.85538 1.05163 1.45462 1.07474 1.08494 1.74078 1.20451 0.82461 0.90545 0.77119 1.90755 1.55174 1.45789 1.47640 1.19778 0.84301 0.88395 0.79155 1.90743 1.55253 1.45179 1.49216 1.45832 1.05428 1.10556 1.69668 1.20433 1.00411 0.80448 0.90804 0.88968 1.19420 0.87408 0.98964 0.95595 1.21120 0.93832 1.46442 0.94698 0.92380 1.24973 0.95414 0.95131 0.98521 1.69956 0.98378 1.48201 1.36436 0.86583 0.77792 0.78644 0.84972 1.20585 1.21208 1.19837 1.20481 0.96729 0.94255 0.96200 1.20960 0.99328 0.99845 0.92478 1.21051 1.00765 0.95947 0.96483 1.21014 1.00950 0.94401 0.98738 1.21044 1.00569 0.99434 0.93041 1.21012 0.99358 0.95452 0.96605 0.92457 0.90941 0.90257 0.91825 0.90464 0.90362 0.87866 0.87782 0.73667 0.74971 0.95448 0.94327 0.92828 0.86392 0.86633 0.86771 0.86508 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 10.44 59.85 0.62 1.14 16 2 N -0.62 -4.59 3.27 -189.51 -0.62 -5.21 16 3 C 0.07 0.28 10.24 59.85 0.61 0.90 16 4 C 0.51 5.37 7.74 -10.99 -0.09 5.28 16 5 O -0.53 -7.52 15.25 5.56 0.08 -7.44 16 6 C 0.10 1.03 4.71 -5.20 -0.02 1.00 16 7 N -0.70 -9.59 5.52 -61.92 -0.34 -9.93 16 8 C 0.51 8.34 7.89 -11.58 -0.09 8.25 16 9 O -0.52 -8.96 16.48 5.50 0.09 -8.87 16 10 C 0.50 9.34 7.85 -11.58 -0.09 9.25 16 11 O -0.53 -10.71 16.14 5.50 0.09 -10.62 16 12 N -0.66 -12.65 4.03 -55.37 -0.22 -12.87 16 13 C 0.18 3.73 2.11 -69.09 -0.15 3.58 16 14 H 0.09 2.00 7.44 -51.93 -0.39 1.62 16 15 C 0.02 0.56 4.49 -27.89 -0.13 0.44 16 16 C -0.52 -13.95 8.84 -34.44 -0.30 -14.25 16 17 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 20 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 24 C -0.08 -1.40 4.91 -104.62 -0.51 -1.92 16 25 C -0.11 -1.84 9.32 -39.58 -0.37 -2.21 16 26 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 27 C -0.13 -1.88 10.05 -39.59 -0.40 -2.28 16 28 C -0.12 -1.83 10.05 -39.59 -0.40 -2.23 16 29 C -0.11 -1.82 9.67 -39.59 -0.38 -2.20 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 32 H 0.08 0.62 7.42 -51.93 -0.39 0.23 16 33 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.08 0.18 8.07 -51.93 -0.42 -0.24 16 35 H 0.08 0.27 6.44 -51.93 -0.33 -0.07 16 36 H 0.10 0.87 7.40 -51.93 -0.38 0.49 16 37 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16 38 H 0.42 6.21 6.91 -40.82 -0.28 5.92 16 39 H 0.41 7.73 8.07 -40.82 -0.33 7.40 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.12 1.93 7.73 -52.49 -0.41 1.53 16 44 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 45 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 46 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 47 H 0.12 1.98 8.04 -52.49 -0.42 1.56 16 LS Contribution 405.14 15.07 6.11 6.11 Total: -1.00 -33.93 405.14 -7.98 -41.90 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -6.69 Total: 11.50 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -2.19 Total: 4.09 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.45 Total: -52.95 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: 0.26 Total: -26.93 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.93 -7.98 -41.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324325311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.048 kcal (2) G-P(sol) polarization free energy of solvation -33.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds