Wall clock time and date at job start Wed Apr 1 2020 04:35:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.46506 * 119.99822 * 2 1
4 4 C 1.34779 * 120.00165 * 179.97438 * 2 1 3
5 5 O 1.21282 * 119.99927 * 0.02562 * 4 2 1
6 6 C 1.50699 * 120.00033 * 179.97438 * 4 2 1
7 7 N 1.46496 * 109.46926 * 180.02562 * 6 4 2
8 8 C 1.34777 * 119.99875 * 180.02562 * 7 6 4
9 9 O 1.21346 * 119.99870 * 0.26710 * 8 7 6
10 10 C 1.49456 * 119.99882 * 179.97438 * 8 7 6
11 11 O 1.21346 * 119.99809 * 359.97438 * 10 8 7
12 12 N 1.34777 * 119.99878 * 179.97438 * 10 8 7
13 13 C 1.46496 * 120.00258 * 179.97438 * 12 10 8
14 14 H 1.09002 * 109.46776 * 35.00022 * 13 12 10
15 15 C 1.52998 * 109.47246 * 155.00083 * 13 12 10
16 16 C 1.50697 * 109.47439 * 295.00322 * 15 13 12
17 17 H 1.08007 * 119.99628 * 359.97438 * 16 15 13
18 18 C 1.37875 * 120.00471 * 180.02562 * 16 15 13
19 19 N 1.31519 * 119.99612 * 359.97438 * 18 16 15
20 20 Si 1.86794 * 120.00481 * 180.02562 * 18 16 15
21 21 H 1.48503 * 109.47274 * 89.99797 * 20 18 16
22 22 H 1.48496 * 109.47331 * 209.99853 * 20 18 16
23 23 H 1.48501 * 109.46858 * 329.99902 * 20 18 16
24 24 C 1.50696 * 109.47365 * 275.00798 * 13 12 10
25 25 C 1.38236 * 119.99802 * 319.72135 * 24 13 12
26 26 C 1.38242 * 120.00141 * 179.79215 * 25 24 13
27 27 C 1.38232 * 119.99627 * 0.44159 * 26 25 24
28 28 C 1.38232 * 119.99889 * 359.81024 * 27 26 25
29 29 C 1.38225 * 120.00662 * 359.97438 * 28 27 26
30 30 H 1.09004 * 109.47343 * 269.99923 * 1 2 3
31 31 H 1.09002 * 109.47379 * 29.99638 * 1 2 3
32 32 H 1.09005 * 109.47039 * 150.00078 * 1 2 3
33 33 H 1.08998 * 109.47145 * 270.00037 * 3 2 1
34 34 H 1.09001 * 109.46833 * 30.00327 * 3 2 1
35 35 H 1.08998 * 109.46879 * 150.00184 * 3 2 1
36 36 H 1.08992 * 109.46824 * 60.00123 * 6 4 2
37 37 H 1.08996 * 109.46811 * 299.99949 * 6 4 2
38 38 H 0.96999 * 120.00082 * 359.97438 * 7 6 4
39 39 H 0.96999 * 120.00047 * 0.02562 * 12 10 8
40 40 H 1.08998 * 109.47261 * 55.00563 * 15 13 12
41 41 H 1.09000 * 109.47285 * 175.00317 * 15 13 12
42 42 H 0.96995 * 119.99952 * 180.02562 * 19 18 16
43 43 H 1.08001 * 120.00085 * 359.97438 * 25 24 13
44 44 H 1.07997 * 119.99779 * 180.27319 * 26 25 24
45 45 H 1.07996 * 119.99638 * 179.83667 * 27 26 25
46 46 H 1.08007 * 119.99514 * 180.02562 * 28 27 26
47 47 H 1.08001 * 120.00946 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.1389 -1.1672 0.0005
5 8 1.5325 -2.2175 0.0005
6 6 3.6459 -1.1672 -0.0001
7 7 4.1342 -2.5483 0.0001
8 6 5.4593 -2.7946 0.0001
9 8 6.2478 -1.8723 0.0050
10 6 5.9575 -4.2037 0.0008
11 8 5.1689 -5.1260 0.0018
12 7 7.2825 -4.4500 0.0004
13 6 7.7709 -5.8311 0.0016
14 1 7.0980 -6.4549 -0.5868
15 6 9.1732 -5.8768 -0.6087
16 6 9.1022 -5.4803 -2.0608
17 1 8.1518 -5.2220 -2.5042
18 6 10.2502 -5.4483 -2.8237
19 7 11.4074 -5.7633 -2.2839
20 14 10.1624 -4.9562 -4.6235
21 1 10.3386 -3.4866 -4.7441
22 1 11.2381 -5.6473 -5.3788
23 1 8.8406 -5.3434 -5.1786
24 6 7.8223 -6.3445 1.4175
25 6 8.2608 -5.5196 2.4363
26 6 8.3039 -5.9891 3.7359
27 6 7.9170 -7.2865 4.0151
28 6 7.4835 -8.1130 2.9954
29 6 7.4362 -7.6422 1.6967
30 1 -0.3634 0.0000 1.0277
31 1 -0.3634 0.8900 -0.5138
32 1 -0.3633 -0.8900 -0.5138
33 1 2.3791 1.5835 -1.0276
34 1 1.6084 2.0284 0.5139
35 1 3.1499 1.1384 0.5138
36 1 4.0095 -0.6528 0.8894
37 1 4.0088 -0.6539 -0.8905
38 1 3.5039 -3.2856 0.0008
39 1 7.9129 -3.7127 0.0000
40 1 9.8246 -5.1851 -0.0746
41 1 9.5722 -6.8879 -0.5272
42 1 12.2151 -5.7405 -2.8204
43 1 8.5670 -4.5073 2.2176
44 1 8.6423 -5.3432 4.5324
45 1 7.9532 -7.6541 5.0299
46 1 7.1808 -9.1266 3.2137
47 1 7.0978 -8.2881 0.9000
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001324325311.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:35:32
Heat of formation + Delta-G solvation = -74.949597 kcal
Electronic energy + Delta-G solvation = -29983.251775 eV
Core-core repulsion = 25745.321842 eV
Total energy + Delta-G solvation = -4237.929933 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-40.73951 -40.02186 -39.01753 -37.92634 -36.10254 -35.50115 -34.56780 -32.72732
-31.14689 -30.46893 -29.81388 -28.85109 -27.93193 -26.18582 -25.14942 -23.41286
-22.30496 -21.95078 -20.45170 -20.02638 -19.73492 -18.45928 -17.24771 -16.92980
-16.65517 -16.42291 -16.34730 -16.13098 -15.57978 -15.26346 -14.88334 -14.82808
-14.50338 -14.25443 -14.08460 -13.51845 -13.50268 -13.29870 -13.15561 -13.03503
-13.00635 -12.76759 -12.56714 -12.46026 -12.44924 -12.11268 -11.62409 -11.39468
-11.13996 -10.95077 -10.72786 -10.61446 -10.46291 -10.36624 -9.81065 -9.41259
-9.40059 -9.26133 -9.20925 -8.63214 -8.52048 -8.44713 -8.21570 -6.08322
-4.12021 1.68856 1.75286 1.79361 2.11644 2.23227 2.79313 3.29586
3.36263 3.40306 3.53044 3.93396 3.95856 4.22866 4.41422 4.55653
4.79141 4.81988 4.86233 4.92894 4.99726 5.16242 5.19737 5.25067
5.26569 5.28829 5.35652 5.38689 5.52011 5.87814 5.88911 5.91713
6.03566 6.09805 6.32001 6.40148 6.52374 6.70738 6.75690 6.83236
6.84354 7.03597 7.13408 7.38571 7.47526 7.54141 7.61405 7.76723
7.87551 8.02626 8.24214 8.44396 8.93098 9.53289 11.02190
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.008009 B = 0.003102 C = 0.002405
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3495.164337 B = 9023.745044 C =11640.565714
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.085 3.915
2 N -0.620 5.620
3 C 0.071 3.929
4 C 0.508 3.492
5 O -0.528 6.528
6 C 0.101 3.899
7 N -0.697 5.697
8 C 0.513 3.487
9 O -0.519 6.519
10 C 0.504 3.496
11 O -0.527 6.527
12 N -0.664 5.664
13 C 0.183 3.817
14 H 0.092 0.908
15 C 0.023 3.977
16 C -0.523 4.523
17 H 0.058 0.942
18 C 0.062 3.938
19 N -0.891 5.891
20 Si 0.892 3.108
21 H -0.280 1.280
22 H -0.286 1.286
23 H -0.274 1.274
24 C -0.076 4.076
25 C -0.108 4.108
26 C -0.124 4.124
27 C -0.133 4.133
28 C -0.123 4.123
29 C -0.106 4.106
30 H 0.057 0.943
31 H 0.072 0.928
32 H 0.079 0.921
33 H 0.063 0.937
34 H 0.077 0.923
35 H 0.078 0.922
36 H 0.104 0.896
37 H 0.104 0.896
38 H 0.423 0.577
39 H 0.414 0.586
40 H 0.027 0.973
41 H 0.039 0.961
42 H 0.262 0.738
43 H 0.118 0.882
44 H 0.116 0.884
45 H 0.114 0.886
46 H 0.117 0.883
47 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.256 11.517 9.297 21.985
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 N -0.355 5.355
3 C -0.072 4.072
4 C 0.295 3.705
5 O -0.404 6.404
6 C -0.026 4.026
7 N -0.355 5.355
8 C 0.294 3.706
9 O -0.394 6.394
10 C 0.284 3.716
11 O -0.404 6.404
12 N -0.315 5.315
13 C 0.079 3.921
14 H 0.110 0.890
15 C -0.014 4.014
16 C -0.561 4.561
17 H 0.076 0.924
18 C -0.140 4.140
19 N -0.530 5.530
20 Si 0.720 3.280
21 H -0.206 1.206
22 H -0.212 1.212
23 H -0.198 1.198
24 C -0.077 4.077
25 C -0.126 4.126
26 C -0.142 4.142
27 C -0.151 4.151
28 C -0.141 4.141
29 C -0.124 4.124
30 H 0.075 0.925
31 H 0.091 0.909
32 H 0.097 0.903
33 H 0.082 0.918
34 H 0.095 0.905
35 H 0.096 0.904
36 H 0.121 0.879
37 H 0.122 0.878
38 H 0.263 0.737
39 H 0.250 0.750
40 H 0.046 0.954
41 H 0.057 0.943
42 H 0.072 0.928
43 H 0.136 0.864
44 H 0.134 0.866
45 H 0.132 0.868
46 H 0.135 0.865
47 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -16.377 10.938 9.241 21.754
hybrid contribution 0.089 0.530 -1.008 1.142
sum -16.288 11.468 8.234 21.555
Atomic orbital electron populations
1.21690 0.78505 1.03450 1.02136 1.47661 1.07464 1.06255 1.74085
1.21950 0.97555 0.85001 1.02644 1.20563 0.89960 0.83706 0.76245
1.90746 1.69778 1.30771 1.49079 1.21149 0.90752 0.85538 1.05163
1.45462 1.07474 1.08494 1.74078 1.20451 0.82461 0.90545 0.77119
1.90755 1.55174 1.45789 1.47640 1.19778 0.84301 0.88395 0.79155
1.90743 1.55253 1.45179 1.49216 1.45832 1.05428 1.10556 1.69668
1.20433 1.00411 0.80448 0.90804 0.88968 1.19420 0.87408 0.98964
0.95595 1.21120 0.93832 1.46442 0.94698 0.92380 1.24973 0.95414
0.95131 0.98521 1.69956 0.98378 1.48201 1.36436 0.86583 0.77792
0.78644 0.84972 1.20585 1.21208 1.19837 1.20481 0.96729 0.94255
0.96200 1.20960 0.99328 0.99845 0.92478 1.21051 1.00765 0.95947
0.96483 1.21014 1.00950 0.94401 0.98738 1.21044 1.00569 0.99434
0.93041 1.21012 0.99358 0.95452 0.96605 0.92457 0.90941 0.90257
0.91825 0.90464 0.90362 0.87866 0.87782 0.73667 0.74971 0.95448
0.94327 0.92828 0.86392 0.86633 0.86771 0.86508 0.86019
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.52 10.44 59.85 0.62 1.14 16
2 N -0.62 -4.59 3.27 -189.51 -0.62 -5.21 16
3 C 0.07 0.28 10.24 59.85 0.61 0.90 16
4 C 0.51 5.37 7.74 -10.99 -0.09 5.28 16
5 O -0.53 -7.52 15.25 5.56 0.08 -7.44 16
6 C 0.10 1.03 4.71 -5.20 -0.02 1.00 16
7 N -0.70 -9.59 5.52 -61.92 -0.34 -9.93 16
8 C 0.51 8.34 7.89 -11.58 -0.09 8.25 16
9 O -0.52 -8.96 16.48 5.50 0.09 -8.87 16
10 C 0.50 9.34 7.85 -11.58 -0.09 9.25 16
11 O -0.53 -10.71 16.14 5.50 0.09 -10.62 16
12 N -0.66 -12.65 4.03 -55.37 -0.22 -12.87 16
13 C 0.18 3.73 2.11 -69.09 -0.15 3.58 16
14 H 0.09 2.00 7.44 -51.93 -0.39 1.62 16
15 C 0.02 0.56 4.49 -27.89 -0.13 0.44 16
16 C -0.52 -13.95 8.84 -34.44 -0.30 -14.25 16
17 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16
18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16
19 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16
20 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16
21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
23 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16
24 C -0.08 -1.40 4.91 -104.62 -0.51 -1.92 16
25 C -0.11 -1.84 9.32 -39.58 -0.37 -2.21 16
26 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16
27 C -0.13 -1.88 10.05 -39.59 -0.40 -2.28 16
28 C -0.12 -1.83 10.05 -39.59 -0.40 -2.23 16
29 C -0.11 -1.82 9.67 -39.59 -0.38 -2.20 16
30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16
31 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16
32 H 0.08 0.62 7.42 -51.93 -0.39 0.23 16
33 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16
34 H 0.08 0.18 8.07 -51.93 -0.42 -0.24 16
35 H 0.08 0.27 6.44 -51.93 -0.33 -0.07 16
36 H 0.10 0.87 7.40 -51.93 -0.38 0.49 16
37 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16
38 H 0.42 6.21 6.91 -40.82 -0.28 5.92 16
39 H 0.41 7.73 8.07 -40.82 -0.33 7.40 16
40 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16
41 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16
42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16
43 H 0.12 1.93 7.73 -52.49 -0.41 1.53 16
44 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16
45 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16
46 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16
47 H 0.12 1.98 8.04 -52.49 -0.42 1.56 16
LS Contribution 405.14 15.07 6.11 6.11
Total: -1.00 -33.93 405.14 -7.98 -41.90
By element:
Atomic # 1 Polarization: 18.19 SS G_CDS: -6.69 Total: 11.50 kcal
Atomic # 6 Polarization: 6.28 SS G_CDS: -2.19 Total: 4.09 kcal
Atomic # 7 Polarization: -52.50 SS G_CDS: -0.45 Total: -52.95 kcal
Atomic # 8 Polarization: -27.19 SS G_CDS: 0.26 Total: -26.93 kcal
Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal
Total LS contribution 6.11 Total: 6.11 kcal
Total: -33.93 -7.98 -41.90 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001324325311.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.048 kcal
(2) G-P(sol) polarization free energy of solvation -33.926 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.973 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.902 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.950 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds