Wall clock time and date at job start Wed Apr 1 2020 04:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 119.99822 * 2 1 4 4 C 1.34779 * 120.00165 * 179.97438 * 2 1 3 5 5 O 1.21282 * 119.99927 * 0.02562 * 4 2 1 6 6 C 1.50699 * 120.00033 * 179.97438 * 4 2 1 7 7 N 1.46496 * 109.46926 * 180.02562 * 6 4 2 8 8 C 1.34777 * 119.99875 * 180.02562 * 7 6 4 9 9 O 1.21346 * 119.99870 * 0.26710 * 8 7 6 10 10 C 1.49456 * 119.99882 * 179.97438 * 8 7 6 11 11 O 1.21346 * 119.99809 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99878 * 179.97438 * 10 8 7 13 13 C 1.46496 * 120.00258 * 179.97438 * 12 10 8 14 14 H 1.09002 * 109.46776 * 35.00022 * 13 12 10 15 15 C 1.52998 * 109.47246 * 155.00083 * 13 12 10 16 16 C 1.50697 * 109.47439 * 295.00322 * 15 13 12 17 17 H 1.08007 * 119.99628 * 359.97438 * 16 15 13 18 18 C 1.37875 * 120.00471 * 180.02562 * 16 15 13 19 19 N 1.31519 * 119.99612 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00481 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47274 * 89.99797 * 20 18 16 22 22 H 1.48496 * 109.47331 * 209.99853 * 20 18 16 23 23 H 1.48501 * 109.46858 * 329.99902 * 20 18 16 24 24 C 1.50696 * 109.47365 * 275.00798 * 13 12 10 25 25 C 1.38236 * 119.99802 * 319.72135 * 24 13 12 26 26 C 1.38242 * 120.00141 * 179.79215 * 25 24 13 27 27 C 1.38232 * 119.99627 * 0.44159 * 26 25 24 28 28 C 1.38232 * 119.99889 * 359.81024 * 27 26 25 29 29 C 1.38225 * 120.00662 * 359.97438 * 28 27 26 30 30 H 1.09004 * 109.47343 * 269.99923 * 1 2 3 31 31 H 1.09002 * 109.47379 * 29.99638 * 1 2 3 32 32 H 1.09005 * 109.47039 * 150.00078 * 1 2 3 33 33 H 1.08998 * 109.47145 * 270.00037 * 3 2 1 34 34 H 1.09001 * 109.46833 * 30.00327 * 3 2 1 35 35 H 1.08998 * 109.46879 * 150.00184 * 3 2 1 36 36 H 1.08992 * 109.46824 * 60.00123 * 6 4 2 37 37 H 1.08996 * 109.46811 * 299.99949 * 6 4 2 38 38 H 0.96999 * 120.00082 * 359.97438 * 7 6 4 39 39 H 0.96999 * 120.00047 * 0.02562 * 12 10 8 40 40 H 1.08998 * 109.47261 * 55.00563 * 15 13 12 41 41 H 1.09000 * 109.47285 * 175.00317 * 15 13 12 42 42 H 0.96995 * 119.99952 * 180.02562 * 19 18 16 43 43 H 1.08001 * 120.00085 * 359.97438 * 25 24 13 44 44 H 1.07997 * 119.99779 * 180.27319 * 26 25 24 45 45 H 1.07996 * 119.99638 * 179.83667 * 27 26 25 46 46 H 1.08007 * 119.99514 * 180.02562 * 28 27 26 47 47 H 1.08001 * 120.00946 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1672 -0.0001 7 7 4.1342 -2.5483 0.0001 8 6 5.4593 -2.7946 0.0001 9 8 6.2478 -1.8723 0.0050 10 6 5.9575 -4.2037 0.0008 11 8 5.1689 -5.1260 0.0018 12 7 7.2825 -4.4500 0.0004 13 6 7.7709 -5.8311 0.0016 14 1 7.0980 -6.4549 -0.5868 15 6 9.1732 -5.8768 -0.6087 16 6 9.1022 -5.4803 -2.0608 17 1 8.1518 -5.2220 -2.5042 18 6 10.2502 -5.4483 -2.8237 19 7 11.4074 -5.7633 -2.2839 20 14 10.1624 -4.9562 -4.6235 21 1 10.3386 -3.4866 -4.7441 22 1 11.2381 -5.6473 -5.3788 23 1 8.8406 -5.3434 -5.1786 24 6 7.8223 -6.3445 1.4175 25 6 8.2608 -5.5196 2.4363 26 6 8.3039 -5.9891 3.7359 27 6 7.9170 -7.2865 4.0151 28 6 7.4835 -8.1130 2.9954 29 6 7.4362 -7.6422 1.6967 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 2.3791 1.5835 -1.0276 34 1 1.6084 2.0284 0.5139 35 1 3.1499 1.1384 0.5138 36 1 4.0095 -0.6528 0.8894 37 1 4.0088 -0.6539 -0.8905 38 1 3.5039 -3.2856 0.0008 39 1 7.9129 -3.7127 0.0000 40 1 9.8246 -5.1851 -0.0746 41 1 9.5722 -6.8879 -0.5272 42 1 12.2151 -5.7405 -2.8204 43 1 8.5670 -4.5073 2.2176 44 1 8.6423 -5.3432 4.5324 45 1 7.9532 -7.6541 5.0299 46 1 7.1808 -9.1266 3.2137 47 1 7.0978 -8.2881 0.9000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324325311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:31 Heat of formation + Delta-G solvation = -98.809775 kcal Electronic energy + Delta-G solvation = -29984.286430 eV Core-core repulsion = 25745.321842 eV Total energy + Delta-G solvation = -4238.964588 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.93964 -41.07420 -40.26773 -39.29871 -37.08618 -36.74731 -35.77586 -34.71941 -32.61616 -31.70628 -30.65662 -30.53281 -28.51091 -27.28076 -26.51317 -24.76606 -23.81696 -23.32372 -21.74351 -21.27959 -20.82290 -19.64520 -18.64808 -18.28038 -17.75833 -17.52664 -17.44749 -17.33831 -16.80552 -16.60117 -16.47042 -16.08647 -15.87826 -15.31430 -15.26348 -14.85308 -14.59059 -14.39575 -14.19913 -14.19072 -14.08228 -13.70351 -13.67854 -13.48989 -13.45561 -13.32145 -12.96967 -12.89048 -12.83237 -12.63216 -12.45959 -12.17212 -11.89046 -11.63697 -11.36757 -11.20581 -10.80544 -10.57660 -10.51874 -10.19396 -9.80036 -9.76556 -9.55253 -8.21027 -6.31240 0.30565 0.47839 0.55264 1.17443 1.33141 1.39777 1.40424 1.51040 1.94668 2.11674 2.39808 2.62970 2.96591 3.13330 3.27114 3.44567 3.93206 4.01443 4.10991 4.18678 4.20406 4.29893 4.32128 4.38063 4.39817 4.49198 4.61092 4.72537 4.76337 4.76769 4.87943 4.91073 4.98072 5.06401 5.13457 5.19810 5.37087 5.39985 5.51900 5.60319 5.63747 5.74092 5.76471 5.91772 6.11526 6.13932 6.18486 6.34117 6.65347 6.80714 6.88735 6.94684 7.37609 8.89717 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008009 B = 0.003102 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3495.164337 B = 9023.745044 C =11640.565714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.613 5.613 3 C 0.063 3.937 4 C 0.504 3.496 5 O -0.575 6.575 6 C 0.099 3.901 7 N -0.688 5.688 8 C 0.521 3.479 9 O -0.530 6.530 10 C 0.501 3.499 11 O -0.549 6.549 12 N -0.664 5.664 13 C 0.198 3.802 14 H 0.072 0.928 15 C 0.037 3.963 16 C -0.533 4.533 17 H 0.053 0.947 18 C 0.012 3.988 19 N -0.924 5.924 20 Si 0.955 3.045 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.271 1.271 24 C -0.102 4.102 25 C -0.124 4.124 26 C -0.125 4.125 27 C -0.126 4.126 28 C -0.122 4.122 29 C -0.127 4.127 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.419 0.581 39 H 0.414 0.586 40 H 0.012 0.988 41 H 0.013 0.987 42 H 0.265 0.735 43 H 0.116 0.884 44 H 0.145 0.855 45 H 0.152 0.848 46 H 0.147 0.853 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.149 13.239 10.410 24.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.345 5.345 3 C -0.079 4.079 4 C 0.292 3.708 5 O -0.455 6.455 6 C -0.027 4.027 7 N -0.344 5.344 8 C 0.301 3.699 9 O -0.406 6.406 10 C 0.282 3.718 11 O -0.427 6.427 12 N -0.314 5.314 13 C 0.094 3.906 14 H 0.090 0.910 15 C 0.000 4.000 16 C -0.571 4.571 17 H 0.071 0.929 18 C -0.187 4.187 19 N -0.564 5.564 20 Si 0.781 3.219 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.196 1.196 24 C -0.103 4.103 25 C -0.142 4.142 26 C -0.143 4.143 27 C -0.144 4.144 28 C -0.140 4.140 29 C -0.146 4.146 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.258 0.742 39 H 0.251 0.749 40 H 0.030 0.970 41 H 0.031 0.969 42 H 0.073 0.927 43 H 0.134 0.866 44 H 0.163 0.837 45 H 0.170 0.830 46 H 0.164 0.836 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.301 12.729 10.357 23.846 hybrid contribution 0.300 0.028 -1.278 1.313 sum -17.001 12.758 9.079 23.113 Atomic orbital electron populations 1.21827 0.77751 1.03881 1.02719 1.47812 1.08166 1.06479 1.72077 1.22247 0.98003 0.83728 1.03900 1.20641 0.90010 0.84040 0.76141 1.90729 1.70477 1.32566 1.51750 1.21439 0.90768 0.83481 1.07014 1.45474 1.06302 1.10197 1.72443 1.19861 0.83259 0.89011 0.77739 1.90750 1.55554 1.45454 1.48854 1.20218 0.83726 0.89569 0.78296 1.90723 1.55616 1.46270 1.50130 1.45741 1.05942 1.09933 1.69808 1.19965 0.97458 0.81095 0.92117 0.91019 1.19154 0.89433 0.96762 0.94695 1.21404 0.93629 1.46052 0.96024 0.92852 1.25765 0.95088 0.95153 1.02711 1.70063 0.99006 1.49291 1.38037 0.85591 0.77809 0.78586 0.79946 1.19728 1.20673 1.19558 1.20363 0.99290 0.95420 0.95238 1.21084 0.99928 0.99799 0.93406 1.21428 0.99839 0.96911 0.96083 1.21490 0.98864 0.93737 1.00297 1.21412 0.99607 1.00978 0.92017 1.21188 1.00243 0.95069 0.98092 0.91812 0.87898 0.92417 0.90676 0.88185 0.89621 0.85612 0.86103 0.74162 0.74881 0.96967 0.96896 0.92654 0.86584 0.83683 0.82987 0.83560 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.44 127.77 1.33 2.19 16 2 N -0.61 -7.92 3.27 -871.86 -2.85 -10.77 16 3 C 0.06 0.30 10.24 127.77 1.31 1.61 16 4 C 0.50 10.21 7.74 87.66 0.68 10.89 16 5 O -0.58 -16.64 15.25 -3.04 -0.05 -16.69 16 6 C 0.10 1.86 4.71 85.63 0.40 2.26 16 7 N -0.69 -18.72 5.52 -468.16 -2.58 -21.31 16 8 C 0.52 16.92 7.89 87.27 0.69 17.61 16 9 O -0.53 -17.98 16.48 -3.23 -0.05 -18.04 16 10 C 0.50 19.12 7.85 87.27 0.68 19.81 16 11 O -0.55 -23.12 16.14 -3.23 -0.05 -23.17 16 12 N -0.66 -26.33 4.03 -447.45 -1.81 -28.14 16 13 C 0.20 8.52 2.11 44.24 0.09 8.62 16 14 H 0.07 3.33 7.44 -2.39 -0.02 3.31 16 15 C 0.04 1.87 4.49 29.85 0.13 2.01 16 16 C -0.53 -29.40 8.84 25.60 0.23 -29.17 16 17 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 18 C 0.01 0.66 5.46 84.65 0.46 1.12 16 19 N -0.92 -54.44 13.29 21.45 0.28 -54.16 16 20 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 C -0.10 -3.92 4.91 -19.87 -0.10 -4.02 16 25 C -0.12 -4.25 9.32 22.27 0.21 -4.05 16 26 C -0.12 -3.49 10.05 22.27 0.22 -3.26 16 27 C -0.13 -3.21 10.05 22.27 0.22 -2.98 16 28 C -0.12 -3.44 10.05 22.27 0.22 -3.22 16 29 C -0.13 -4.45 9.67 22.27 0.22 -4.24 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.10 0.46 8.07 -2.39 -0.02 0.44 16 32 H 0.06 0.89 7.42 -2.38 -0.02 0.87 16 33 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.10 0.08 8.07 -2.39 -0.02 0.06 16 35 H 0.09 0.32 6.44 -2.39 -0.02 0.30 16 36 H 0.13 1.84 7.40 -2.39 -0.02 1.82 16 37 H 0.12 1.92 8.11 -2.39 -0.02 1.90 16 38 H 0.42 12.49 6.91 -92.71 -0.64 11.85 16 39 H 0.41 16.13 8.07 -92.71 -0.75 15.38 16 40 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 43 H 0.12 3.90 7.73 -2.91 -0.02 3.88 16 44 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 45 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 46 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 47 H 0.12 4.05 8.04 -2.91 -0.02 4.03 16 Total: -1.00 -75.69 405.14 1.54 -74.15 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: -0.38 Total: 36.78 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 7.01 Total: 15.18 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -6.96 Total: -114.37 kcal Atomic # 8 Polarization: -57.75 SS G_CDS: -0.15 Total: -57.90 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -75.69 1.54 -74.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324325311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.659 kcal (2) G-P(sol) polarization free energy of solvation -75.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds