Wall clock time and date at job start Wed Apr 1 2020 04:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.50691 * 109.47318 * 90.00113 * 3 2 1 5 5 C 1.38237 * 120.00087 * 269.73144 * 4 3 2 6 6 C 1.38237 * 119.99887 * 179.76622 * 5 4 3 7 7 C 1.38240 * 119.99987 * 0.50242 * 6 5 4 8 8 C 1.38235 * 120.00002 * 359.74667 * 7 6 5 9 9 C 1.38237 * 120.00019 * 0.02562 * 8 7 6 10 10 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 11 11 O 1.21279 * 120.00410 * 179.97438 * 10 2 1 12 12 C 1.50703 * 119.99541 * 359.97438 * 10 2 1 13 13 N 1.46500 * 109.46723 * 180.02562 * 12 10 2 14 14 C 1.34778 * 119.99849 * 180.02562 * 13 12 10 15 15 O 1.21345 * 120.00225 * 359.97438 * 14 13 12 16 16 C 1.49450 * 119.99999 * 180.02562 * 14 13 12 17 17 O 1.21345 * 120.00197 * 359.97438 * 16 14 13 18 18 N 1.34778 * 119.99999 * 180.02562 * 16 14 13 19 19 C 1.46500 * 119.99849 * 179.97438 * 18 16 14 20 20 C 1.53001 * 109.46942 * 179.97438 * 19 18 16 21 21 C 1.50701 * 109.47183 * 180.02562 * 20 19 18 22 22 H 1.08004 * 119.99969 * 359.97438 * 21 20 19 23 23 C 1.37878 * 120.00116 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99853 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00057 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47126 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47101 * 120.00237 * 25 23 21 28 28 H 1.48502 * 109.47309 * 240.00411 * 25 23 21 29 29 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 30 30 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 31 31 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 32 32 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 33 33 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 34 34 H 1.07995 * 119.99731 * 359.97438 * 5 4 3 35 35 H 1.07995 * 120.00222 * 180.22621 * 6 5 4 36 36 H 1.08005 * 119.99922 * 179.72333 * 7 6 5 37 37 H 1.07998 * 120.00124 * 179.97438 * 8 7 6 38 38 H 1.07999 * 120.00129 * 179.97438 * 9 8 7 39 39 H 1.08996 * 109.47057 * 299.99739 * 12 10 2 40 40 H 1.08996 * 109.47084 * 60.00703 * 12 10 2 41 41 H 0.97000 * 120.00385 * 359.97438 * 13 12 10 42 42 H 0.96997 * 120.00322 * 359.97438 * 18 16 14 43 43 H 1.08996 * 109.47027 * 299.99341 * 19 18 16 44 44 H 1.09000 * 109.47441 * 59.99685 * 19 18 16 45 45 H 1.09004 * 109.47175 * 299.99749 * 20 19 18 46 46 H 1.08999 * 109.47495 * 60.00128 * 20 19 18 47 47 H 0.97002 * 119.99338 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4207 5 6 1.5298 2.5065 2.0705 6 6 1.7580 2.9016 3.3754 7 6 2.9100 2.5025 4.0271 8 6 3.8313 1.7040 3.3755 9 6 3.6010 1.3051 2.0722 10 6 2.1389 -1.1672 -0.0005 11 8 3.3517 -1.1672 -0.0010 12 6 1.3854 -2.4723 -0.0005 13 7 2.3374 -3.5858 -0.0005 14 6 1.8881 -4.8565 -0.0010 15 8 0.6951 -5.0783 -0.0010 16 6 2.8593 -5.9924 -0.0005 17 8 4.0523 -5.7707 0.0000 18 7 2.4100 -7.2631 -0.0015 19 6 3.3621 -8.3766 -0.0015 20 6 2.5970 -9.7016 -0.0022 21 6 3.5763 -10.8471 -0.0015 22 1 4.6382 -10.6497 -0.0012 23 6 3.1167 -12.1470 -0.0014 24 7 1.8237 -12.3873 -0.0024 25 14 4.3306 -13.5669 -0.0013 26 1 5.7165 -13.0333 -0.0008 27 1 4.1202 -14.3980 1.2113 28 1 4.1203 -14.3981 -1.2138 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5139 31 1 -0.3633 -0.8900 0.5139 32 1 3.1499 1.1384 -0.5139 33 1 1.6084 2.0284 -0.5139 34 1 0.6321 2.8221 1.5598 35 1 1.0384 3.5257 3.8844 36 1 3.0904 2.8149 5.0451 37 1 4.7316 1.3926 3.8844 38 1 4.3209 0.6816 1.5630 39 1 0.7591 -2.5302 0.8897 40 1 0.7585 -2.5298 -0.8903 41 1 3.2911 -3.4086 -0.0009 42 1 1.4564 -7.4404 -0.0023 43 1 3.9892 -8.3184 -0.8911 44 1 3.9882 -8.3194 0.8889 45 1 1.9701 -9.7597 0.8876 46 1 1.9707 -9.7592 -0.8923 47 1 1.5005 -13.3019 -0.0027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325559359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:11 Heat of formation + Delta-G solvation = -80.274560 kcal Electronic energy + Delta-G solvation = -28722.365960 eV Core-core repulsion = 24484.205119 eV Total energy + Delta-G solvation = -4238.160841 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.92654 -40.21046 -39.29157 -38.21481 -36.26042 -35.37017 -34.50995 -32.84257 -32.43572 -31.28658 -29.83944 -29.04475 -27.78286 -26.17914 -25.19526 -23.26570 -22.94514 -21.87291 -21.02154 -20.37553 -19.86788 -18.51595 -17.50854 -17.21990 -16.72240 -16.64548 -16.47675 -16.13228 -15.82470 -15.37390 -15.33076 -15.10938 -14.76282 -14.50367 -14.42553 -13.86725 -13.75679 -13.65597 -13.40855 -13.31037 -13.10639 -13.02910 -12.88130 -12.61924 -12.37982 -12.31981 -11.66133 -11.53736 -11.37282 -11.21963 -11.06686 -10.64146 -10.44947 -10.39546 -9.79910 -9.50287 -9.45313 -9.33960 -9.30761 -9.20174 -9.15148 -8.68237 -8.41041 -6.09535 -4.12905 0.84344 1.01739 1.58391 2.06676 2.18251 2.71594 3.28817 3.36449 3.41284 3.41504 3.44772 3.88417 3.89332 4.31065 4.38396 4.41352 4.52417 4.61450 4.69006 4.74776 4.77695 4.81809 4.92186 4.96132 5.06877 5.16339 5.21315 5.25707 5.27550 5.57314 5.65633 5.82210 5.94820 6.04587 6.14119 6.18481 6.19781 6.25837 6.59887 6.61206 6.70759 6.72538 7.02349 7.47321 7.55888 7.58912 7.66172 7.88204 7.90369 8.22020 8.35285 8.92963 9.52038 11.01979 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022543 B = 0.001558 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.766009 B =17964.835454 C =18492.846914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.609 5.609 3 C 0.155 3.845 4 C -0.112 4.112 5 C -0.107 4.107 6 C -0.126 4.126 7 C -0.116 4.116 8 C -0.122 4.122 9 C -0.094 4.094 10 C 0.511 3.489 11 O -0.525 6.525 12 C 0.101 3.899 13 N -0.696 5.696 14 C 0.512 3.488 15 O -0.521 6.521 16 C 0.499 3.501 17 O -0.528 6.528 18 N -0.686 5.686 19 C 0.118 3.882 20 C 0.010 3.990 21 C -0.522 4.522 22 H 0.061 0.939 23 C 0.059 3.941 24 N -0.892 5.892 25 Si 0.898 3.102 26 H -0.271 1.271 27 H -0.283 1.283 28 H -0.283 1.283 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.424 0.576 42 H 0.410 0.590 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.025 0.975 46 H 0.025 0.975 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.160 34.843 2.854 35.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.343 5.343 3 C 0.033 3.967 4 C -0.113 4.113 5 C -0.126 4.126 6 C -0.144 4.144 7 C -0.134 4.134 8 C -0.140 4.140 9 C -0.113 4.113 10 C 0.299 3.701 11 O -0.400 6.400 12 C -0.026 4.026 13 N -0.354 5.354 14 C 0.293 3.707 15 O -0.397 6.397 16 C 0.278 3.722 17 O -0.405 6.405 18 N -0.337 5.337 19 C -0.003 4.003 20 C -0.027 4.027 21 C -0.561 4.561 22 H 0.079 0.921 23 C -0.143 4.143 24 N -0.531 5.531 25 Si 0.725 3.275 26 H -0.196 1.196 27 H -0.209 1.209 28 H -0.209 1.209 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.147 0.853 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.264 0.736 42 H 0.246 0.754 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.044 0.956 46 H 0.044 0.956 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.636 34.663 2.828 35.086 hybrid contribution 0.318 -0.731 0.143 0.809 sum -4.318 33.933 2.971 34.335 Atomic orbital electron populations 1.21957 0.78687 1.04005 1.02556 1.47787 1.07319 1.05356 1.73791 1.20393 0.98705 0.84519 0.93034 1.20191 0.95400 0.98847 0.96850 1.21033 0.98629 0.97960 0.94976 1.21135 0.97696 1.00550 0.94972 1.21225 0.94392 0.97869 0.99916 1.21240 0.99620 0.98134 0.95029 1.21275 0.97045 0.98204 0.94755 1.20532 0.88145 0.85432 0.76013 1.90725 1.13561 1.86812 1.48951 1.21165 0.92338 0.83976 1.05153 1.45468 1.12120 1.03893 1.73870 1.20472 0.88962 0.84075 0.77149 1.90753 1.16228 1.84810 1.47860 1.19827 0.88278 0.84461 0.79648 1.90757 1.15905 1.84627 1.49236 1.46214 1.12534 1.04912 1.70020 1.21946 0.91685 0.85258 1.01417 1.19369 0.96142 0.88949 0.98269 1.21060 0.93070 0.90443 1.51531 0.92088 1.25004 0.95281 0.99071 0.94949 1.69973 1.12562 1.20337 1.50208 0.86442 0.81349 0.82062 0.77612 1.19575 1.20940 1.20931 0.91684 0.90543 0.90409 0.88633 0.89293 0.86215 0.86069 0.86099 0.85923 0.85269 0.87885 0.87792 0.73613 0.75391 0.91804 0.91815 0.95628 0.95623 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.24 10.24 59.85 0.61 0.85 16 2 N -0.61 -3.94 2.86 -182.95 -0.52 -4.47 16 3 C 0.16 0.95 5.53 -5.20 -0.03 0.92 16 4 C -0.11 -0.81 5.46 -104.63 -0.57 -1.38 16 5 C -0.11 -0.65 9.70 -39.58 -0.38 -1.04 16 6 C -0.13 -0.78 10.05 -39.58 -0.40 -1.18 16 7 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 8 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 9 C -0.09 -0.82 9.70 -39.58 -0.38 -1.20 16 10 C 0.51 4.77 7.74 -10.98 -0.09 4.69 16 11 O -0.52 -6.55 14.78 5.56 0.08 -6.47 16 12 C 0.10 0.92 4.71 -5.19 -0.02 0.90 16 13 N -0.70 -8.77 5.52 -61.91 -0.34 -9.11 16 14 C 0.51 7.75 7.89 -11.58 -0.09 7.66 16 15 O -0.52 -8.42 16.48 5.50 0.09 -8.33 16 16 C 0.50 8.82 7.89 -11.58 -0.09 8.72 16 17 O -0.53 -10.46 16.48 5.50 0.09 -10.37 16 18 N -0.69 -12.60 5.55 -60.73 -0.34 -12.94 16 19 C 0.12 2.50 5.61 -4.04 -0.02 2.48 16 20 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 21 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 22 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 23 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 24 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 25 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.08 0.16 8.07 -51.93 -0.42 -0.26 16 31 H 0.08 0.24 6.44 -51.93 -0.33 -0.10 16 32 H 0.10 0.71 7.36 -51.93 -0.38 0.32 16 33 H 0.09 0.32 8.01 -51.93 -0.42 -0.09 16 34 H 0.12 0.45 8.06 -52.49 -0.42 0.03 16 35 H 0.12 0.52 8.06 -52.49 -0.42 0.09 16 36 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 37 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 38 H 0.13 1.25 7.59 -52.49 -0.40 0.85 16 39 H 0.10 0.83 7.40 -51.93 -0.38 0.44 16 40 H 0.10 0.80 8.11 -51.93 -0.42 0.38 16 41 H 0.42 5.70 6.91 -40.82 -0.28 5.42 16 42 H 0.41 7.09 7.94 -40.82 -0.32 6.77 16 43 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 406.91 15.07 6.13 6.13 Total: -1.00 -34.04 406.91 -8.61 -42.65 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.71 Total: 6.16 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -2.82 Total: 5.79 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.47 Total: -51.88 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: 0.26 Total: -25.17 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.04 -8.61 -42.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325559359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.623 kcal (2) G-P(sol) polarization free energy of solvation -34.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds