Wall clock time and date at job start Wed Apr 1 2020 04:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.50691 * 109.47318 * 90.00113 * 3 2 1 5 5 C 1.38237 * 120.00087 * 269.73144 * 4 3 2 6 6 C 1.38237 * 119.99887 * 179.76622 * 5 4 3 7 7 C 1.38240 * 119.99987 * 0.50242 * 6 5 4 8 8 C 1.38235 * 120.00002 * 359.74667 * 7 6 5 9 9 C 1.38237 * 120.00019 * 0.02562 * 8 7 6 10 10 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 11 11 O 1.21279 * 120.00410 * 179.97438 * 10 2 1 12 12 C 1.50703 * 119.99541 * 359.97438 * 10 2 1 13 13 N 1.46500 * 109.46723 * 180.02562 * 12 10 2 14 14 C 1.34778 * 119.99849 * 180.02562 * 13 12 10 15 15 O 1.21345 * 120.00225 * 359.97438 * 14 13 12 16 16 C 1.49450 * 119.99999 * 180.02562 * 14 13 12 17 17 O 1.21345 * 120.00197 * 359.97438 * 16 14 13 18 18 N 1.34778 * 119.99999 * 180.02562 * 16 14 13 19 19 C 1.46500 * 119.99849 * 179.97438 * 18 16 14 20 20 C 1.53001 * 109.46942 * 179.97438 * 19 18 16 21 21 C 1.50701 * 109.47183 * 180.02562 * 20 19 18 22 22 H 1.08004 * 119.99969 * 359.97438 * 21 20 19 23 23 C 1.37878 * 120.00116 * 179.97438 * 21 20 19 24 24 N 1.31517 * 119.99853 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00057 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47126 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47101 * 120.00237 * 25 23 21 28 28 H 1.48502 * 109.47309 * 240.00411 * 25 23 21 29 29 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 30 30 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 31 31 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 32 32 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 33 33 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 34 34 H 1.07995 * 119.99731 * 359.97438 * 5 4 3 35 35 H 1.07995 * 120.00222 * 180.22621 * 6 5 4 36 36 H 1.08005 * 119.99922 * 179.72333 * 7 6 5 37 37 H 1.07998 * 120.00124 * 179.97438 * 8 7 6 38 38 H 1.07999 * 120.00129 * 179.97438 * 9 8 7 39 39 H 1.08996 * 109.47057 * 299.99739 * 12 10 2 40 40 H 1.08996 * 109.47084 * 60.00703 * 12 10 2 41 41 H 0.97000 * 120.00385 * 359.97438 * 13 12 10 42 42 H 0.96997 * 120.00322 * 359.97438 * 18 16 14 43 43 H 1.08996 * 109.47027 * 299.99341 * 19 18 16 44 44 H 1.09000 * 109.47441 * 59.99685 * 19 18 16 45 45 H 1.09004 * 109.47175 * 299.99749 * 20 19 18 46 46 H 1.08999 * 109.47495 * 60.00128 * 20 19 18 47 47 H 0.97002 * 119.99338 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4207 5 6 1.5298 2.5065 2.0705 6 6 1.7580 2.9016 3.3754 7 6 2.9100 2.5025 4.0271 8 6 3.8313 1.7040 3.3755 9 6 3.6010 1.3051 2.0722 10 6 2.1389 -1.1672 -0.0005 11 8 3.3517 -1.1672 -0.0010 12 6 1.3854 -2.4723 -0.0005 13 7 2.3374 -3.5858 -0.0005 14 6 1.8881 -4.8565 -0.0010 15 8 0.6951 -5.0783 -0.0010 16 6 2.8593 -5.9924 -0.0005 17 8 4.0523 -5.7707 0.0000 18 7 2.4100 -7.2631 -0.0015 19 6 3.3621 -8.3766 -0.0015 20 6 2.5970 -9.7016 -0.0022 21 6 3.5763 -10.8471 -0.0015 22 1 4.6382 -10.6497 -0.0012 23 6 3.1167 -12.1470 -0.0014 24 7 1.8237 -12.3873 -0.0024 25 14 4.3306 -13.5669 -0.0013 26 1 5.7165 -13.0333 -0.0008 27 1 4.1202 -14.3980 1.2113 28 1 4.1203 -14.3981 -1.2138 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5139 31 1 -0.3633 -0.8900 0.5139 32 1 3.1499 1.1384 -0.5139 33 1 1.6084 2.0284 -0.5139 34 1 0.6321 2.8221 1.5598 35 1 1.0384 3.5257 3.8844 36 1 3.0904 2.8149 5.0451 37 1 4.7316 1.3926 3.8844 38 1 4.3209 0.6816 1.5630 39 1 0.7591 -2.5302 0.8897 40 1 0.7585 -2.5298 -0.8903 41 1 3.2911 -3.4086 -0.0009 42 1 1.4564 -7.4404 -0.0023 43 1 3.9892 -8.3184 -0.8911 44 1 3.9882 -8.3194 0.8889 45 1 1.9701 -9.7597 0.8876 46 1 1.9707 -9.7592 -0.8923 47 1 1.5005 -13.3019 -0.0027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325559359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:10 Heat of formation + Delta-G solvation = -104.033311 kcal Electronic energy + Delta-G solvation = -28723.396217 eV Core-core repulsion = 24484.205119 eV Total energy + Delta-G solvation = -4239.191097 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.91395 -41.17445 -39.96095 -39.49363 -37.01038 -36.77172 -35.74990 -34.78726 -32.97721 -31.79462 -31.70724 -29.90730 -28.20056 -27.40767 -26.41391 -24.69336 -23.45381 -22.84958 -22.41231 -21.56944 -20.71423 -19.64080 -18.61284 -18.22677 -17.86912 -17.49799 -17.48013 -17.29232 -16.81726 -16.50043 -16.37972 -16.11267 -15.94691 -15.78264 -15.59079 -14.96135 -14.78052 -14.36674 -14.31405 -14.27833 -14.19272 -13.73132 -13.60626 -13.48626 -13.27127 -13.25350 -12.96345 -12.89549 -12.82551 -12.51701 -12.29690 -12.14127 -11.86625 -11.69275 -11.42102 -11.18244 -10.78702 -10.62023 -10.52475 -10.22040 -9.86095 -9.83442 -9.68338 -8.23456 -6.34282 0.26066 0.32200 0.48749 1.14613 1.37688 1.42423 1.43594 1.56634 1.96000 2.06517 2.40073 2.64544 2.91495 3.11595 3.29217 3.39926 3.83002 3.91220 4.12245 4.14904 4.19802 4.27141 4.29608 4.32993 4.38763 4.44795 4.57721 4.64673 4.74880 4.79228 4.81101 4.87748 5.00153 5.06494 5.08816 5.14730 5.37090 5.42656 5.54645 5.55373 5.61714 5.65331 5.74729 5.84159 6.09929 6.13290 6.15669 6.29061 6.62204 6.78961 6.88856 6.92377 7.35171 8.88689 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022543 B = 0.001558 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.766009 B =17964.835454 C =18492.846914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.600 5.600 3 C 0.155 3.845 4 C -0.118 4.118 5 C -0.105 4.105 6 C -0.129 4.129 7 C -0.125 4.125 8 C -0.140 4.140 9 C -0.119 4.119 10 C 0.507 3.493 11 O -0.566 6.566 12 C 0.099 3.901 13 N -0.686 5.686 14 C 0.522 3.478 15 O -0.531 6.531 16 C 0.499 3.501 17 O -0.550 6.550 18 N -0.685 5.685 19 C 0.137 3.863 20 C 0.018 3.982 21 C -0.545 4.545 22 H 0.063 0.937 23 C 0.006 3.994 24 N -0.927 5.927 25 Si 0.967 3.033 26 H -0.264 1.264 27 H -0.278 1.278 28 H -0.278 1.278 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.137 0.863 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.420 0.580 42 H 0.416 0.584 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.010 0.990 46 H 0.010 0.990 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.580 36.496 2.913 37.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.331 5.331 3 C 0.033 3.967 4 C -0.119 4.119 5 C -0.123 4.123 6 C -0.147 4.147 7 C -0.143 4.143 8 C -0.158 4.158 9 C -0.137 4.137 10 C 0.295 3.705 11 O -0.445 6.445 12 C -0.027 4.027 13 N -0.342 5.342 14 C 0.303 3.697 15 O -0.407 6.407 16 C 0.280 3.720 17 O -0.429 6.429 18 N -0.337 5.337 19 C 0.014 3.986 20 C -0.019 4.019 21 C -0.583 4.583 22 H 0.082 0.918 23 C -0.193 4.193 24 N -0.566 5.566 25 Si 0.792 3.208 26 H -0.188 1.188 27 H -0.204 1.204 28 H -0.203 1.203 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.140 0.860 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.155 0.845 37 H 0.142 0.858 38 H 0.125 0.875 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.259 0.741 42 H 0.253 0.747 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.098 36.380 2.887 37.000 hybrid contribution 0.715 -1.115 0.142 1.332 sum -5.382 35.265 3.028 35.801 Atomic orbital electron populations 1.22260 0.76334 1.05293 1.04110 1.47857 1.08714 1.04510 1.72061 1.20480 0.98588 0.84991 0.92624 1.20323 0.95138 0.99105 0.97301 1.21357 0.99094 0.96867 0.94971 1.21507 0.97681 1.00253 0.95223 1.21489 0.94500 0.97544 1.00765 1.21384 1.00374 0.98976 0.95064 1.21266 0.97850 0.99190 0.95421 1.20607 0.87671 0.86285 0.75936 1.90719 1.15261 1.87348 1.51192 1.21445 0.91705 0.82626 1.06926 1.45477 1.12641 1.03899 1.72204 1.19791 0.88033 0.84092 0.77829 1.90757 1.16092 1.84891 1.49001 1.20273 0.88504 0.84761 0.78477 1.90745 1.17124 1.85010 1.50031 1.46029 1.12383 1.04814 1.70434 1.21496 0.91404 0.84564 1.01127 1.19189 0.95625 0.90478 0.96640 1.21480 0.93701 0.91642 1.51504 0.91844 1.25897 0.97093 1.01890 0.94422 1.70081 1.14396 1.21161 1.50989 0.85360 0.79142 0.78508 0.77791 1.18784 1.20353 1.20320 0.89958 0.88568 0.89927 0.90656 0.85991 0.83192 0.83672 0.84533 0.85837 0.87510 0.86207 0.85694 0.74065 0.74696 0.92066 0.92124 0.97208 0.97168 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.20 10.24 127.77 1.31 1.51 16 2 N -0.60 -6.66 2.86 -851.12 -2.43 -9.09 16 3 C 0.15 1.69 5.53 85.63 0.47 2.16 16 4 C -0.12 -1.59 5.46 -19.87 -0.11 -1.70 16 5 C -0.10 -0.99 9.70 22.27 0.22 -0.77 16 6 C -0.13 -1.30 10.05 22.27 0.22 -1.08 16 7 C -0.12 -1.60 10.05 22.27 0.22 -1.37 16 8 C -0.14 -2.30 10.05 22.27 0.22 -2.08 16 9 C -0.12 -2.18 9.70 22.27 0.22 -1.96 16 10 C 0.51 9.10 7.74 87.66 0.68 9.78 16 11 O -0.57 -14.61 14.78 -3.02 -0.04 -14.65 16 12 C 0.10 1.64 4.71 85.63 0.40 2.05 16 13 N -0.69 -16.84 5.52 -468.15 -2.58 -19.43 16 14 C 0.52 15.41 7.89 87.27 0.69 16.10 16 15 O -0.53 -16.47 16.48 -3.23 -0.05 -16.52 16 16 C 0.50 17.62 7.89 87.27 0.69 18.31 16 17 O -0.55 -21.96 16.48 -3.23 -0.05 -22.01 16 18 N -0.69 -25.29 5.55 -464.42 -2.58 -27.87 16 19 C 0.14 5.84 5.61 86.38 0.48 6.32 16 20 C 0.02 0.92 5.09 29.85 0.15 1.07 16 21 C -0.54 -30.30 9.11 25.60 0.23 -30.07 16 22 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 23 C 0.01 0.32 5.46 84.65 0.46 0.78 16 24 N -0.93 -54.67 13.29 21.45 0.28 -54.38 16 25 Si 0.97 43.66 29.54 68.60 2.03 45.68 16 26 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 28 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 29 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.10 -0.02 8.07 -2.39 -0.02 -0.03 16 31 H 0.08 0.23 6.44 -2.38 -0.02 0.22 16 32 H 0.07 1.15 7.36 -2.39 -0.02 1.13 16 33 H 0.12 0.50 8.01 -2.38 -0.02 0.48 16 34 H 0.15 0.46 8.06 -2.91 -0.02 0.43 16 35 H 0.15 0.74 8.06 -2.91 -0.02 0.71 16 36 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 37 H 0.12 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.11 2.36 7.59 -2.91 -0.02 2.33 16 39 H 0.12 1.64 7.40 -2.39 -0.02 1.63 16 40 H 0.13 1.60 8.11 -2.39 -0.02 1.58 16 41 H 0.42 11.37 6.91 -92.71 -0.64 10.73 16 42 H 0.42 14.45 7.94 -92.71 -0.74 13.72 16 43 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 44 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -74.28 406.91 0.76 -73.51 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: -0.37 Total: 25.70 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: 6.57 Total: 19.06 kcal Atomic # 7 Polarization: -103.46 SS G_CDS: -7.31 Total: -110.77 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: -0.15 Total: -53.18 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -74.28 0.76 -73.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325559359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.521 kcal (2) G-P(sol) polarization free energy of solvation -74.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds