Wall clock time and date at job start Wed Apr 1 2020 04:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99553 * 2 1 4 4 O 1.21552 * 120.00298 * 0.02562 * 3 2 1 5 5 C 1.47845 * 120.00012 * 179.97438 * 3 2 1 6 6 C 1.39571 * 120.14594 * 179.97438 * 5 3 2 7 7 C 1.37956 * 119.85308 * 180.02562 * 6 5 3 8 8 C 1.38361 * 120.14496 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.85111 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.47014 * 90.00243 * 9 8 7 11 11 C 1.34770 * 119.99664 * 179.97438 * 10 9 8 12 12 O 1.21345 * 120.00276 * 0.02562 * 11 10 9 13 13 C 1.49460 * 119.99676 * 179.97438 * 11 10 9 14 14 O 1.21345 * 120.00048 * 0.02562 * 13 11 10 15 15 N 1.34780 * 119.99600 * 179.97438 * 13 11 10 16 16 C 1.46505 * 119.99588 * 180.02562 * 15 13 11 17 17 C 1.52996 * 109.47111 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47213 * 179.97438 * 17 16 15 19 19 C 1.50696 * 109.47110 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00016 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99841 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00437 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99806 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47477 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47011 * 120.00419 * 23 21 19 26 26 H 1.48502 * 109.47495 * 240.00041 * 23 21 19 27 27 C 1.38356 * 120.29417 * 0.23278 * 8 7 6 28 28 C 1.37960 * 120.14290 * 359.48864 * 27 8 7 29 29 H 1.08996 * 109.47370 * 299.99588 * 1 2 3 30 30 H 1.08992 * 109.47522 * 60.00373 * 1 2 3 31 31 H 1.09005 * 109.46688 * 180.02562 * 1 2 3 32 32 H 0.96997 * 120.00523 * 179.97438 * 2 1 3 33 33 H 1.08003 * 120.07690 * 0.02562 * 6 5 3 34 34 H 1.08001 * 119.92660 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.46646 * 209.99569 * 9 8 7 36 36 H 1.09000 * 109.47248 * 330.00286 * 9 8 7 37 37 H 0.97000 * 120.00105 * 359.97438 * 10 9 8 38 38 H 0.97000 * 120.00307 * 359.97438 * 15 13 11 39 39 H 1.09004 * 109.46612 * 299.99988 * 16 15 13 40 40 H 1.08995 * 109.46989 * 59.99553 * 16 15 13 41 41 H 1.08997 * 109.46711 * 300.00139 * 17 16 15 42 42 H 1.09004 * 109.47075 * 59.99557 * 17 16 15 43 43 H 1.08996 * 109.46776 * 300.00048 * 18 17 16 44 44 H 1.09000 * 109.46955 * 59.99998 * 18 17 16 45 45 H 0.96995 * 120.00548 * 179.97438 * 22 21 19 46 46 H 1.07994 * 119.92715 * 179.74290 * 27 8 7 47 47 H 1.07998 * 120.07313 * 180.24959 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6173 1.1674 0.0006 6 6 4.3181 2.3744 0.0000 7 6 5.6977 2.3674 0.0000 8 6 6.3865 1.1675 0.0000 9 6 7.8935 1.1676 -0.0005 10 7 8.3824 1.1679 1.3805 11 6 9.7075 1.1676 1.6262 12 8 10.4957 1.1675 0.7036 13 6 10.2062 1.1684 3.0352 14 8 9.4180 1.1690 3.9578 15 7 11.5314 1.1676 3.2809 16 6 12.0203 1.1679 4.6620 17 6 13.5503 1.1674 4.6614 18 6 14.0608 1.1683 6.1037 19 6 15.5678 1.1672 6.1031 20 1 16.1074 1.1663 5.1676 21 6 16.2576 1.1683 7.2969 22 7 15.6005 1.1699 8.4361 23 14 18.1256 1.1676 7.2962 24 1 18.6201 1.1665 5.8959 25 1 18.6213 2.3807 7.9947 26 1 18.6205 -0.0442 7.9974 27 6 5.6979 -0.0325 -0.0048 28 6 4.3183 -0.0397 0.0010 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.9501 -0.8400 0.0004 33 1 3.7817 3.3117 -0.0004 34 1 6.2412 3.3007 0.0000 35 1 8.2567 0.2775 -0.5143 36 1 8.2566 2.0575 -0.5147 37 1 7.7524 1.1683 2.1181 38 1 12.1615 1.1660 2.5434 39 1 11.6578 2.0584 5.1754 40 1 11.6564 0.2785 5.1763 41 1 13.9130 0.2771 4.1477 42 1 13.9137 2.0571 4.1471 43 1 13.6979 2.0588 6.6169 44 1 13.6974 0.2788 6.6183 45 1 16.0858 1.1703 9.2760 46 1 6.2415 -0.9657 -0.0090 47 1 3.7819 -0.9770 0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327804062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:30 Heat of formation + Delta-G solvation = -94.239526 kcal Electronic energy + Delta-G solvation = -27759.598385 eV Core-core repulsion = 23520.831978 eV Total energy + Delta-G solvation = -4238.766407 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.92601 -40.55152 -39.19155 -38.43047 -35.93038 -35.28921 -35.18063 -33.35913 -32.18034 -31.59413 -31.26782 -28.47731 -27.30296 -26.44908 -24.43714 -23.29014 -22.91626 -22.25349 -20.93059 -20.80973 -20.23000 -18.90903 -18.51393 -17.01297 -16.84003 -16.39525 -16.16152 -16.06171 -15.77821 -15.55729 -15.46504 -15.41733 -14.84018 -14.77478 -14.45038 -14.18071 -13.86102 -13.79622 -13.72433 -13.60848 -12.93563 -12.90549 -12.83323 -12.33336 -12.16988 -11.90756 -11.82015 -11.75799 -11.66010 -10.94183 -10.78261 -10.59306 -10.55405 -9.93291 -9.92435 -9.77779 -9.63606 -9.57019 -9.51553 -9.32300 -9.13023 -9.01299 -8.39564 -6.04080 -4.07090 0.13117 0.77165 1.35996 2.10460 2.47765 2.59329 3.17123 3.26001 3.29262 3.37033 3.40799 3.69496 3.92100 4.12340 4.18928 4.35631 4.42317 4.47380 4.61407 4.70913 4.74258 4.94628 5.01929 5.10508 5.21825 5.26049 5.32142 5.40499 5.56933 5.61842 5.66892 5.72313 5.76420 5.83256 5.90604 6.05858 6.23682 6.23741 6.51991 6.65752 6.84022 6.84695 6.93334 7.34365 7.60444 7.61367 7.65048 7.71718 7.94253 8.00795 8.35525 8.99693 9.57525 11.07240 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.001293 C = 0.001266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.171988 B =21650.496301 C =22113.046097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.732 5.732 3 C 0.557 3.443 4 O -0.533 6.533 5 C -0.129 4.129 6 C -0.060 4.060 7 C -0.104 4.104 8 C -0.083 4.083 9 C 0.156 3.844 10 N -0.701 5.701 11 C 0.510 3.490 12 O -0.518 6.518 13 C 0.500 3.500 14 O -0.525 6.525 15 N -0.691 5.691 16 C 0.113 3.887 17 C -0.123 4.123 18 C 0.024 3.976 19 C -0.522 4.522 20 H 0.057 0.943 21 C 0.057 3.943 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.284 1.284 27 C -0.105 4.105 28 C -0.088 4.088 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.402 0.598 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.415 0.585 38 H 0.411 0.589 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.261 0.739 46 H 0.134 0.866 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.702 -4.135 -21.401 36.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.384 5.384 3 C 0.344 3.656 4 O -0.411 6.411 5 C -0.133 4.133 6 C -0.078 4.078 7 C -0.122 4.122 8 C -0.084 4.084 9 C 0.033 3.967 10 N -0.356 5.356 11 C 0.291 3.709 12 O -0.394 6.394 13 C 0.280 3.720 14 O -0.402 6.402 15 N -0.342 5.342 16 C -0.009 4.009 17 C -0.161 4.161 18 C -0.014 4.014 19 C -0.561 4.561 20 H 0.075 0.925 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.123 4.123 28 C -0.107 4.107 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.237 0.763 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.252 0.748 38 H 0.247 0.753 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.152 0.848 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -29.118 -3.381 -21.208 36.181 hybrid contribution 1.182 -0.501 0.125 1.290 sum -27.937 -3.883 -21.083 35.214 Atomic orbital electron populations 1.21587 0.78945 1.02536 1.02654 1.45718 1.08090 1.08621 1.75980 1.18342 0.87298 0.83795 0.76118 1.90796 1.69916 1.31137 1.49219 1.19974 0.92635 0.94692 1.05956 1.21305 0.93771 0.97899 0.94860 1.21167 0.93891 0.98081 0.99095 1.20082 0.94971 0.93681 0.99681 1.20357 0.88919 1.04206 0.83198 1.45787 1.06847 1.73789 1.09163 1.20380 0.83026 0.77461 0.90068 1.90771 1.55197 1.47661 1.45731 1.19961 0.84069 0.79163 0.88830 1.90769 1.55265 1.48813 1.45375 1.46076 1.05951 1.70942 1.11268 1.21857 0.96740 1.02570 0.79688 1.21930 0.90228 1.01331 1.02593 1.19038 0.95897 0.97728 0.88712 1.21237 0.91557 1.50875 0.92411 0.92510 1.25018 0.98524 0.95214 0.95637 1.69966 1.35406 1.50636 0.97284 0.86527 0.85713 0.77602 0.78106 1.19705 1.20998 1.20998 1.21075 0.93869 0.98021 0.99337 1.21272 0.94455 0.96908 0.98025 0.91911 0.91959 0.90371 0.76284 0.84247 0.84674 0.89638 0.89611 0.74836 0.75286 0.91054 0.91060 0.92413 0.92407 0.96181 0.96191 0.92967 0.84798 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.34 10.70 59.85 0.64 0.98 16 2 N -0.73 -3.58 5.66 -68.04 -0.39 -3.96 16 3 C 0.56 4.58 7.77 -12.33 -0.10 4.49 16 4 O -0.53 -6.42 16.35 5.32 0.09 -6.33 16 5 C -0.13 -0.89 5.87 -104.97 -0.62 -1.51 16 6 C -0.06 -0.43 9.60 -39.19 -0.38 -0.80 16 7 C -0.10 -0.64 9.68 -39.64 -0.38 -1.02 16 8 C -0.08 -0.49 5.25 -104.53 -0.55 -1.04 16 9 C 0.16 1.06 5.79 -5.19 -0.03 1.03 16 10 N -0.70 -6.31 5.54 -61.90 -0.34 -6.65 16 11 C 0.51 6.17 7.89 -11.58 -0.09 6.08 16 12 O -0.52 -7.19 16.48 5.50 0.09 -7.10 16 13 C 0.50 7.13 7.89 -11.58 -0.09 7.04 16 14 O -0.53 -8.63 16.48 5.50 0.09 -8.54 16 15 N -0.69 -9.98 5.55 -60.73 -0.34 -10.32 16 16 C 0.11 1.90 5.67 -4.04 -0.02 1.88 16 17 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 18 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 19 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 23 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 27 C -0.10 -0.52 9.68 -39.64 -0.38 -0.91 16 28 C -0.09 -0.42 9.54 -39.18 -0.37 -0.79 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 32 H 0.40 0.79 6.86 -40.82 -0.28 0.51 16 33 H 0.14 1.02 7.65 -52.48 -0.40 0.62 16 34 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 35 H 0.09 0.55 8.08 -51.93 -0.42 0.13 16 36 H 0.09 0.58 8.08 -51.93 -0.42 0.16 16 37 H 0.42 3.55 7.94 -40.82 -0.32 3.22 16 38 H 0.41 5.40 7.94 -40.82 -0.32 5.07 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 47 H 0.13 0.23 6.41 -52.49 -0.34 -0.10 16 LS Contribution 408.76 15.07 6.16 6.16 Total: -1.00 -35.48 408.76 -8.68 -44.16 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.70 Total: 1.86 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -3.06 Total: 0.17 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.33 Total: -46.70 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: 0.27 Total: -21.97 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.48 -8.68 -44.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327804062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.076 kcal (2) G-P(sol) polarization free energy of solvation -35.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds