Wall clock time and date at job start Wed Apr 1 2020 04:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99553 * 2 1 4 4 O 1.21552 * 120.00298 * 0.02562 * 3 2 1 5 5 C 1.47845 * 120.00012 * 179.97438 * 3 2 1 6 6 C 1.39571 * 120.14594 * 179.97438 * 5 3 2 7 7 C 1.37956 * 119.85308 * 180.02562 * 6 5 3 8 8 C 1.38361 * 120.14496 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.85111 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.47014 * 90.00243 * 9 8 7 11 11 C 1.34770 * 119.99664 * 179.97438 * 10 9 8 12 12 O 1.21345 * 120.00276 * 0.02562 * 11 10 9 13 13 C 1.49460 * 119.99676 * 179.97438 * 11 10 9 14 14 O 1.21345 * 120.00048 * 0.02562 * 13 11 10 15 15 N 1.34780 * 119.99600 * 179.97438 * 13 11 10 16 16 C 1.46505 * 119.99588 * 180.02562 * 15 13 11 17 17 C 1.52996 * 109.47111 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47213 * 179.97438 * 17 16 15 19 19 C 1.50696 * 109.47110 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00016 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99841 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00437 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99806 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47477 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47011 * 120.00419 * 23 21 19 26 26 H 1.48502 * 109.47495 * 240.00041 * 23 21 19 27 27 C 1.38356 * 120.29417 * 0.23278 * 8 7 6 28 28 C 1.37960 * 120.14290 * 359.48864 * 27 8 7 29 29 H 1.08996 * 109.47370 * 299.99588 * 1 2 3 30 30 H 1.08992 * 109.47522 * 60.00373 * 1 2 3 31 31 H 1.09005 * 109.46688 * 180.02562 * 1 2 3 32 32 H 0.96997 * 120.00523 * 179.97438 * 2 1 3 33 33 H 1.08003 * 120.07690 * 0.02562 * 6 5 3 34 34 H 1.08001 * 119.92660 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.46646 * 209.99569 * 9 8 7 36 36 H 1.09000 * 109.47248 * 330.00286 * 9 8 7 37 37 H 0.97000 * 120.00105 * 359.97438 * 10 9 8 38 38 H 0.97000 * 120.00307 * 359.97438 * 15 13 11 39 39 H 1.09004 * 109.46612 * 299.99988 * 16 15 13 40 40 H 1.08995 * 109.46989 * 59.99553 * 16 15 13 41 41 H 1.08997 * 109.46711 * 300.00139 * 17 16 15 42 42 H 1.09004 * 109.47075 * 59.99557 * 17 16 15 43 43 H 1.08996 * 109.46776 * 300.00048 * 18 17 16 44 44 H 1.09000 * 109.46955 * 59.99998 * 18 17 16 45 45 H 0.96995 * 120.00548 * 179.97438 * 22 21 19 46 46 H 1.07994 * 119.92715 * 179.74290 * 27 8 7 47 47 H 1.07998 * 120.07313 * 180.24959 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6173 1.1674 0.0006 6 6 4.3181 2.3744 0.0000 7 6 5.6977 2.3674 0.0000 8 6 6.3865 1.1675 0.0000 9 6 7.8935 1.1676 -0.0005 10 7 8.3824 1.1679 1.3805 11 6 9.7075 1.1676 1.6262 12 8 10.4957 1.1675 0.7036 13 6 10.2062 1.1684 3.0352 14 8 9.4180 1.1690 3.9578 15 7 11.5314 1.1676 3.2809 16 6 12.0203 1.1679 4.6620 17 6 13.5503 1.1674 4.6614 18 6 14.0608 1.1683 6.1037 19 6 15.5678 1.1672 6.1031 20 1 16.1074 1.1663 5.1676 21 6 16.2576 1.1683 7.2969 22 7 15.6005 1.1699 8.4361 23 14 18.1256 1.1676 7.2962 24 1 18.6201 1.1665 5.8959 25 1 18.6213 2.3807 7.9947 26 1 18.6205 -0.0442 7.9974 27 6 5.6979 -0.0325 -0.0048 28 6 4.3183 -0.0397 0.0010 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.9501 -0.8400 0.0004 33 1 3.7817 3.3117 -0.0004 34 1 6.2412 3.3007 0.0000 35 1 8.2567 0.2775 -0.5143 36 1 8.2566 2.0575 -0.5147 37 1 7.7524 1.1683 2.1181 38 1 12.1615 1.1660 2.5434 39 1 11.6578 2.0584 5.1754 40 1 11.6564 0.2785 5.1763 41 1 13.9130 0.2771 4.1477 42 1 13.9137 2.0571 4.1471 43 1 13.6979 2.0588 6.6169 44 1 13.6974 0.2788 6.6183 45 1 16.0858 1.1703 9.2760 46 1 6.2415 -0.9657 -0.0090 47 1 3.7819 -0.9770 0.0012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327804062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:29 Heat of formation + Delta-G solvation = -121.054291 kcal Electronic energy + Delta-G solvation = -27760.761160 eV Core-core repulsion = 23520.831978 eV Total energy + Delta-G solvation = -4239.929183 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.77818 -41.26484 -39.93534 -39.33078 -37.21029 -36.19365 -35.79479 -35.16741 -33.04553 -32.76776 -32.03063 -29.28376 -28.66116 -27.17363 -25.74826 -24.17347 -23.65141 -23.09790 -22.35469 -21.50769 -21.30098 -19.68689 -19.29659 -18.51513 -17.95168 -17.43080 -17.15789 -16.81412 -16.64717 -16.36526 -16.31735 -16.30847 -15.94355 -15.79332 -15.65191 -14.96182 -14.91832 -14.58579 -14.28443 -14.27244 -14.11447 -13.76376 -13.69110 -13.46121 -13.43774 -13.13500 -12.88436 -12.77894 -12.67881 -12.53966 -12.36277 -12.08569 -11.69127 -11.55593 -11.21340 -11.19698 -10.78788 -10.54579 -10.39485 -10.32028 -10.26867 -10.02081 -9.90043 -8.18770 -6.29512 -0.37466 0.30979 0.34704 1.27025 1.42334 1.43225 1.55937 1.76286 2.11187 2.16190 2.42463 2.60553 2.88668 3.15535 3.41730 3.44933 3.72322 3.76152 3.94259 4.09856 4.19626 4.20380 4.31561 4.44005 4.54019 4.57591 4.59297 4.60198 4.76518 4.88215 4.92672 4.93031 4.99967 5.05529 5.16430 5.17786 5.24486 5.29099 5.32389 5.45327 5.53018 5.72067 5.79501 5.85623 5.88016 6.23787 6.31871 6.43759 6.68835 6.87838 6.91101 7.11043 7.40111 8.93334 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028884 B = 0.001293 C = 0.001266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.171988 B =21650.496301 C =22113.046097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.717 5.717 3 C 0.550 3.450 4 O -0.584 6.584 5 C -0.142 4.142 6 C -0.077 4.077 7 C -0.106 4.106 8 C -0.084 4.084 9 C 0.157 3.843 10 N -0.685 5.685 11 C 0.518 3.482 12 O -0.536 6.536 13 C 0.501 3.499 14 O -0.549 6.549 15 N -0.686 5.686 16 C 0.127 3.873 17 C -0.106 4.106 18 C 0.024 3.976 19 C -0.541 4.541 20 H 0.064 0.936 21 C 0.000 4.000 22 N -0.933 5.933 23 Si 0.964 3.036 24 H -0.260 1.260 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.102 4.102 28 C -0.079 4.079 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.114 0.886 32 H 0.418 0.582 33 H 0.127 0.873 34 H 0.143 0.857 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.419 0.581 38 H 0.420 0.580 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.067 0.933 43 H -0.004 1.004 44 H -0.003 1.003 45 H 0.263 0.737 46 H 0.156 0.844 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.315 -5.772 -23.077 36.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.369 5.369 3 C 0.338 3.662 4 O -0.465 6.465 5 C -0.145 4.145 6 C -0.096 4.096 7 C -0.125 4.125 8 C -0.085 4.085 9 C 0.035 3.965 10 N -0.339 5.339 11 C 0.298 3.702 12 O -0.413 6.413 13 C 0.281 3.719 14 O -0.427 6.427 15 N -0.338 5.338 16 C 0.004 3.996 17 C -0.144 4.144 18 C -0.014 4.014 19 C -0.579 4.579 20 H 0.082 0.918 21 C -0.198 4.198 22 N -0.574 5.574 23 Si 0.789 3.211 24 H -0.184 1.184 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.121 4.121 28 C -0.097 4.097 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.133 0.867 32 H 0.256 0.744 33 H 0.145 0.855 34 H 0.161 0.839 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.256 0.744 38 H 0.257 0.743 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.014 0.986 44 H 0.015 0.985 45 H 0.072 0.928 46 H 0.174 0.826 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -28.757 -5.064 -22.921 37.121 hybrid contribution 0.955 -0.027 0.640 1.150 sum -27.802 -5.091 -22.281 35.990 Atomic orbital electron populations 1.21729 0.78276 1.04575 1.01601 1.45677 1.08643 1.08421 1.74160 1.18666 0.87967 0.83952 0.75607 1.90766 1.70885 1.32965 1.51871 1.20028 0.92063 0.95559 1.06844 1.21320 0.94333 0.97884 0.96056 1.21243 0.93470 0.98797 0.98977 1.20042 0.94394 0.93998 1.00064 1.20497 0.89382 1.04930 0.81688 1.45793 1.05707 1.71889 1.10464 1.19856 0.83886 0.77956 0.88489 1.90774 1.55806 1.49159 1.45606 1.20366 0.83556 0.78148 0.89804 1.90760 1.55760 1.49761 1.46441 1.45881 1.06528 1.71035 1.10400 1.21472 0.95117 1.01973 0.81050 1.21640 0.91688 1.02259 0.98808 1.18941 0.95055 0.95426 0.91947 1.21713 0.93051 1.50360 0.92805 0.91753 1.25955 1.03764 0.94793 0.95274 1.70098 1.37508 1.51764 0.98004 0.85414 0.79442 0.77621 0.78656 1.18381 1.20626 1.20556 1.21362 0.94048 0.98470 0.98186 1.21569 0.94521 0.97238 0.96381 0.93144 0.92924 0.86735 0.74359 0.85530 0.83934 0.88532 0.89283 0.74417 0.74278 0.91831 0.91684 0.91366 0.91472 0.98574 0.98496 0.92821 0.82628 0.82147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 10.70 127.77 1.37 1.92 16 2 N -0.72 -6.02 5.66 -487.47 -2.76 -8.78 16 3 C 0.55 9.02 7.77 86.79 0.67 9.70 16 4 O -0.58 -14.85 16.35 -3.88 -0.06 -14.92 16 5 C -0.14 -1.86 5.87 -20.09 -0.12 -1.98 16 6 C -0.08 -1.12 9.60 22.52 0.22 -0.91 16 7 C -0.11 -1.23 9.68 22.23 0.22 -1.01 16 8 C -0.08 -0.82 5.25 -19.80 -0.10 -0.93 16 9 C 0.16 1.76 5.79 85.63 0.50 2.26 16 10 N -0.69 -10.95 5.54 -468.12 -2.59 -13.55 16 11 C 0.52 11.64 7.89 87.27 0.69 12.33 16 12 O -0.54 -13.86 16.48 -3.23 -0.05 -13.91 16 13 C 0.50 13.70 7.89 87.27 0.69 14.39 16 14 O -0.55 -17.61 16.48 -3.23 -0.05 -17.66 16 15 N -0.69 -19.05 5.55 -464.40 -2.58 -21.63 16 16 C 0.13 4.21 5.67 86.38 0.49 4.70 16 17 C -0.11 -3.99 5.27 30.59 0.16 -3.83 16 18 C 0.02 1.22 4.97 29.85 0.15 1.36 16 19 C -0.54 -29.88 9.11 25.60 0.23 -29.64 16 20 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 21 C 0.00 0.00 5.46 84.66 0.46 0.46 16 22 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 23 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 24 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 27 C -0.10 -0.73 9.68 22.23 0.22 -0.51 16 28 C -0.08 -0.54 9.54 22.53 0.21 -0.33 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.11 -0.07 8.14 -2.38 -0.02 -0.09 16 32 H 0.42 0.51 6.86 -92.71 -0.64 -0.13 16 33 H 0.13 2.09 7.65 -2.91 -0.02 2.07 16 34 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 35 H 0.10 0.96 8.08 -2.39 -0.02 0.94 16 36 H 0.09 1.01 8.08 -2.39 -0.02 0.99 16 37 H 0.42 6.37 7.94 -92.71 -0.74 5.64 16 38 H 0.42 10.33 7.94 -92.71 -0.74 9.59 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 43 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 44 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 45 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 46 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16 47 H 0.16 -0.04 6.41 -2.91 -0.02 -0.06 16 Total: -1.00 -77.94 408.76 -0.82 -78.76 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -1.08 Total: 14.04 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 6.05 Total: 7.99 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -7.65 Total: -99.84 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -0.17 Total: -46.49 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -77.94 -0.82 -78.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327804062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.295 kcal (2) G-P(sol) polarization free energy of solvation -77.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds