Wall clock time and date at job start Wed Apr 1 2020 05:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35671 * 116.99854 * 2 1 4 4 N 1.32276 * 119.68900 * 359.97438 * 3 2 1 5 5 C 1.31933 * 121.65230 * 180.02562 * 4 3 2 6 6 C 1.38088 * 120.83259 * 359.97438 * 5 4 3 7 7 C 1.38793 * 119.28659 * 359.73491 * 6 5 4 8 8 C 1.38419 * 118.48323 * 0.52663 * 7 6 5 9 9 C 1.50704 * 120.44328 * 179.73529 * 8 7 6 10 10 N 1.46499 * 109.47090 * 259.72819 * 9 8 7 11 11 C 1.34775 * 119.99505 * 179.97438 * 10 9 8 12 12 O 1.21352 * 120.00141 * 359.97438 * 11 10 9 13 13 C 1.49448 * 119.99800 * 180.02562 * 11 10 9 14 14 O 1.21344 * 120.00308 * 353.23338 * 13 11 10 15 15 N 1.34784 * 120.00133 * 173.23049 * 13 11 10 16 16 C 1.46929 * 120.62828 * 351.35143 * 15 13 11 17 17 C 1.53191 * 108.89438 * 233.55930 * 16 15 13 18 18 C 1.53070 * 109.29330 * 305.58156 * 17 16 15 19 19 C 1.53040 * 109.66092 * 61.15257 * 18 17 16 20 20 H 1.09000 * 109.49788 * 58.65045 * 19 18 17 21 21 C 1.50699 * 109.49627 * 178.74544 * 19 18 17 22 22 H 1.07993 * 120.00318 * 359.84311 * 21 19 18 23 23 C 1.37881 * 120.00047 * 179.83697 * 21 19 18 24 24 N 1.31523 * 119.99840 * 0.02562 * 23 21 19 25 25 Si 1.86793 * 120.00310 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47250 * 60.00246 * 25 23 21 27 27 H 1.48503 * 109.47339 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.46979 * 299.99914 * 25 23 21 29 29 C 1.46924 * 120.63092 * 171.37996 * 15 13 11 30 30 H 1.09002 * 109.47490 * 299.99804 * 1 2 3 31 31 H 1.09001 * 109.47230 * 60.00151 * 1 2 3 32 32 H 1.09005 * 109.47522 * 180.02562 * 1 2 3 33 33 H 1.08005 * 119.58495 * 179.97438 * 5 4 3 34 34 H 1.07999 * 120.35655 * 180.02562 * 6 5 4 35 35 H 1.07993 * 120.75749 * 180.28986 * 7 6 5 36 36 H 1.08995 * 109.46665 * 139.72965 * 9 8 7 37 37 H 1.09002 * 109.46302 * 19.72795 * 9 8 7 38 38 H 0.96995 * 120.00359 * 0.02562 * 10 9 8 39 39 H 1.09001 * 109.58364 * 353.42154 * 16 15 13 40 40 H 1.08998 * 109.58185 * 113.69820 * 16 15 13 41 41 H 1.09001 * 109.49476 * 65.38778 * 17 16 15 42 42 H 1.08999 * 109.49901 * 185.48778 * 17 16 15 43 43 H 1.09002 * 109.35068 * 301.12365 * 18 17 16 44 44 H 1.09002 * 109.44049 * 181.23616 * 18 17 16 45 45 H 0.96998 * 120.00395 * 179.97438 * 24 23 21 46 46 H 1.09006 * 109.57806 * 246.15416 * 29 15 13 47 47 H 1.09000 * 109.58866 * 6.43300 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3184 2.3143 -0.0005 5 6 1.8767 3.5096 -0.0010 6 6 3.2505 3.6491 -0.0005 7 6 4.0483 2.5134 0.0061 8 6 3.4322 1.2739 0.0009 9 6 4.2557 0.0118 0.0018 10 7 4.3221 -0.5289 -1.3582 11 6 5.0110 -1.6618 -1.5999 12 8 5.5765 -2.2337 -0.6912 13 6 5.0792 -2.2132 -2.9873 14 8 4.4165 -1.7131 -3.8723 15 7 5.8770 -3.2659 -3.2557 16 6 6.8243 -3.7632 -2.2486 17 6 8.2243 -3.8164 -2.8681 18 6 8.1771 -4.6450 -4.1543 19 6 7.2267 -3.9861 -5.1566 20 1 7.5671 -2.9726 -5.3687 21 6 7.2066 -4.7878 -6.4325 22 1 7.8131 -5.6770 -6.5212 23 6 6.4138 -4.3862 -7.4867 24 7 5.6755 -3.3031 -7.3789 25 14 6.3883 -5.3804 -9.0679 26 1 5.9259 -6.7612 -8.7771 27 1 5.4635 -4.7423 -10.0390 28 1 7.7558 -5.4275 -9.6451 29 6 5.8162 -3.9376 -4.5610 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.2514 4.3902 -0.0019 34 1 3.6994 4.6314 -0.0006 35 1 5.1251 2.5949 0.0114 36 1 3.7947 -0.7223 0.6625 37 1 5.2629 0.2356 0.3535 38 1 3.8710 -0.0712 -2.0847 39 1 6.8300 -3.0922 -1.3896 40 1 6.5275 -4.7623 -1.9298 41 1 8.5576 -2.8051 -3.1011 42 1 8.9172 -4.2749 -2.1625 43 1 7.8225 -5.6496 -3.9239 44 1 9.1765 -4.7028 -4.5855 45 1 5.1180 -3.0203 -8.1206 46 1 5.4387 -4.9521 -4.4325 47 1 5.1549 -3.3832 -5.2268 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328818906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:29 Heat of formation + Delta-G solvation = -56.308648 kcal Electronic energy + Delta-G solvation = -30580.706512 eV Core-core repulsion = 26343.584911 eV Total energy + Delta-G solvation = -4237.121601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.14441 -40.32870 -38.29305 -38.14868 -36.80342 -35.48160 -33.29432 -32.68334 -31.71095 -31.24142 -29.73680 -27.75149 -27.20653 -25.46722 -24.92543 -23.35135 -22.98233 -21.89287 -21.76652 -20.12827 -18.91013 -18.65082 -17.51151 -17.25516 -16.68121 -16.32460 -16.13815 -15.77446 -15.62209 -15.23214 -14.88128 -14.56699 -14.50593 -14.19197 -13.94100 -13.68315 -13.64063 -13.38546 -13.20746 -12.93308 -12.72781 -12.52825 -12.36657 -12.12239 -11.88422 -11.76683 -11.51197 -11.36452 -10.94859 -10.70575 -10.44518 -10.28105 -10.26995 -10.09662 -10.02423 -9.85337 -9.24164 -9.18504 -9.08969 -8.87055 -8.51587 -8.42331 -7.78542 -5.99455 -4.08226 0.63754 0.91375 1.85768 2.76904 2.79941 3.32469 3.38104 3.39631 3.41976 3.68364 3.89290 4.07193 4.39018 4.43051 4.43429 4.58930 4.77033 4.87027 5.01910 5.07152 5.09196 5.26254 5.30259 5.38991 5.53016 5.63453 5.66805 5.68975 5.82121 5.88596 6.03339 6.12065 6.26941 6.39202 6.55322 6.62975 6.74017 6.87411 6.89291 7.00752 7.06403 7.21083 7.29082 7.46300 7.61328 7.84969 7.96856 8.00736 8.20045 8.37774 8.62327 8.95564 9.57133 11.05683 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015116 B = 0.002467 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.864110 B =11345.100201 C =12123.568484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.299 6.299 3 C 0.339 3.661 4 N -0.542 5.542 5 C 0.147 3.853 6 C -0.214 4.214 7 C -0.020 4.020 8 C -0.182 4.182 9 C 0.175 3.825 10 N -0.698 5.698 11 C 0.511 3.489 12 O -0.519 6.519 13 C 0.494 3.506 14 O -0.521 6.521 15 N -0.570 5.570 16 C 0.072 3.928 17 C -0.133 4.133 18 C -0.113 4.113 19 C 0.041 3.959 20 H 0.030 0.970 21 C -0.520 4.520 22 H 0.058 0.942 23 C 0.062 3.938 24 N -0.881 5.881 25 Si 0.893 3.107 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 C 0.108 3.892 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.161 0.839 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.412 0.588 39 H 0.126 0.874 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.264 0.736 46 H 0.048 0.952 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.327 12.675 18.496 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.205 6.205 3 C 0.160 3.840 4 N -0.265 5.265 5 C -0.009 4.009 6 C -0.234 4.234 7 C -0.046 4.046 8 C -0.185 4.185 9 C 0.051 3.949 10 N -0.351 5.351 11 C 0.294 3.706 12 O -0.396 6.396 13 C 0.275 3.725 14 O -0.397 6.397 15 N -0.302 5.302 16 C -0.050 4.050 17 C -0.171 4.171 18 C -0.150 4.150 19 C 0.022 3.978 20 H 0.048 0.952 21 C -0.559 4.559 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.518 5.518 25 Si 0.721 3.279 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.203 1.203 29 C -0.011 4.011 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.178 0.822 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.249 0.751 39 H 0.143 0.857 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.232 12.251 18.559 23.384 hybrid contribution 0.339 -0.102 -1.242 1.292 sum -6.893 12.149 17.317 22.248 Atomic orbital electron populations 1.22909 0.76895 1.03323 1.02410 1.86320 1.23130 1.24018 1.87005 1.19722 0.88789 0.85006 0.90516 1.67398 1.40742 0.98800 1.19595 1.22498 0.93037 0.93686 0.91684 1.22012 0.94867 0.99905 1.06614 1.21459 1.00976 0.90541 0.91632 1.19881 0.91312 0.96490 1.10853 1.19993 0.99111 0.91513 0.84242 1.45841 1.52783 1.25659 1.10843 1.20732 0.78759 0.80776 0.90332 1.90469 1.43973 1.58634 1.46569 1.19805 0.82588 0.82338 0.87748 1.90774 1.44298 1.58298 1.46377 1.48423 1.35253 1.29168 1.17325 1.22674 0.88407 1.01414 0.92555 1.21964 0.95979 1.00859 0.98348 1.21662 1.00355 0.98340 0.94676 1.18947 0.89711 0.96824 0.92282 0.95219 1.21052 1.26303 1.10951 0.97570 0.92328 1.25064 0.95360 0.94984 0.98661 1.69879 1.27005 1.22905 1.32061 0.86637 0.77874 0.80257 0.83114 1.20244 1.21271 1.20282 1.22472 1.03186 0.95486 0.79990 0.92308 0.92059 0.88380 0.82191 0.84180 0.83690 0.89667 0.89971 0.75148 0.85692 0.92225 0.92468 0.92104 0.93195 0.93079 0.92606 0.93382 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.38 101.05 1.05 1.40 16 2 O -0.30 -3.47 9.73 -18.71 -0.18 -3.65 16 3 C 0.34 3.78 7.47 -17.12 -0.13 3.66 16 4 N -0.54 -5.61 9.22 -13.33 -0.12 -5.73 16 5 C 0.15 1.13 11.18 -17.56 -0.20 0.93 16 6 C -0.21 -1.43 10.11 -39.43 -0.40 -1.83 16 7 C -0.02 -0.16 9.81 -39.31 -0.39 -0.54 16 8 C -0.18 -1.82 5.28 -104.32 -0.55 -2.37 16 9 C 0.17 1.92 5.49 -5.19 -0.03 1.90 16 10 N -0.70 -9.65 5.54 -61.91 -0.34 -10.00 16 11 C 0.51 8.66 7.74 -11.59 -0.09 8.57 16 12 O -0.52 -8.97 13.18 5.50 0.07 -8.90 16 13 C 0.49 10.23 7.73 -11.58 -0.09 10.14 16 14 O -0.52 -12.24 15.93 5.50 0.09 -12.15 16 15 N -0.57 -12.09 2.97 -173.28 -0.52 -12.60 16 16 C 0.07 1.30 5.98 -3.71 -0.02 1.27 16 17 C -0.13 -2.36 6.09 -26.60 -0.16 -2.52 16 18 C -0.11 -2.33 5.10 -26.67 -0.14 -2.47 16 19 C 0.04 1.04 2.26 -91.66 -0.21 0.83 16 20 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 21 C -0.52 -14.16 8.56 -34.44 -0.29 -14.45 16 22 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 23 C 0.06 1.72 5.30 -17.81 -0.09 1.62 16 24 N -0.88 -25.56 11.39 55.43 0.63 -24.93 16 25 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 C 0.11 2.66 5.41 -3.72 -0.02 2.64 16 30 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.16 0.75 8.06 -52.48 -0.42 0.32 16 34 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.09 0.99 7.87 -51.93 -0.41 0.58 16 37 H 0.08 0.80 8.03 -51.93 -0.42 0.38 16 38 H 0.41 5.79 7.95 -40.82 -0.32 5.46 16 39 H 0.13 2.18 4.31 -54.78 -0.24 1.94 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.12 3.47 5.13 -51.93 -0.27 3.20 16 LS Contribution 387.57 15.07 5.84 5.84 Total: -1.00 -32.63 387.57 -7.99 -40.63 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.69 Total: 6.47 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: -1.75 Total: 8.78 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.35 Total: -53.26 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.02 Total: -24.70 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.63 -7.99 -40.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328818906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.681 kcal (2) G-P(sol) polarization free energy of solvation -32.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds